Wall clock time and date at job start Tue Mar 31 2020 19:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29933 * 125.37469 * 2 1 4 4 C 1.36074 * 108.47456 * 180.18961 * 3 2 1 5 5 C 1.47421 * 126.44987 * 179.86185 * 4 3 2 6 6 O 1.21610 * 119.99952 * 174.14638 * 5 4 3 7 7 N 1.34774 * 119.99666 * 354.15300 * 5 4 3 8 8 C 1.46923 * 120.63555 * 353.41181 * 7 5 4 9 9 C 1.53187 * 108.89342 * 233.51935 * 8 7 5 10 10 C 1.53070 * 109.29809 * 305.57678 * 9 8 7 11 11 N 1.46501 * 109.44400 * 181.23720 * 10 9 8 12 12 C 1.36930 * 119.99830 * 299.79728 * 11 10 9 13 13 H 1.08000 * 120.00633 * 327.95357 * 12 11 10 14 14 C 1.38822 * 119.99743 * 147.95496 * 12 11 10 15 15 N 1.31616 * 120.00202 * 336.21725 * 14 12 11 16 16 Si 1.86807 * 119.99704 * 156.21576 * 14 12 11 17 17 H 1.48502 * 109.46841 * 90.00156 * 16 14 12 18 18 H 1.48494 * 109.46830 * 209.99971 * 16 14 12 19 19 H 1.48497 * 109.47369 * 330.00251 * 16 14 12 20 20 C 1.46500 * 119.99863 * 119.79584 * 11 10 9 21 21 C 1.53000 * 109.47339 * 84.31002 * 20 11 10 22 22 O 1.42896 * 109.46936 * 64.99822 * 21 20 11 23 23 C 1.53041 * 109.65734 * 61.15502 * 10 9 8 24 24 C 1.46929 * 120.62889 * 173.39767 * 7 5 4 25 25 C 1.36089 * 107.10082 * 359.59835 * 4 3 2 26 26 C 1.50703 * 126.52570 * 180.27816 * 25 4 3 27 27 O 1.34045 * 125.37886 * 179.75089 * 2 1 3 28 28 H 1.08999 * 109.47349 * 180.27461 * 1 2 3 29 29 H 1.09001 * 109.47486 * 300.28091 * 1 2 3 30 30 H 1.09008 * 109.47206 * 60.27636 * 1 2 3 31 31 H 1.08998 * 109.58557 * 353.37600 * 8 7 5 32 32 H 1.08994 * 109.58736 * 113.65893 * 8 7 5 33 33 H 1.09000 * 109.49758 * 65.39093 * 9 8 7 34 34 H 1.09001 * 109.49675 * 185.48262 * 9 8 7 35 35 H 1.09004 * 109.34652 * 301.12844 * 10 9 8 36 36 H 0.96999 * 120.00062 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47313 * 204.31035 * 20 11 10 38 38 H 1.08998 * 109.47426 * 324.30574 * 20 11 10 39 39 H 1.09000 * 109.47112 * 185.00011 * 21 20 11 40 40 H 1.08999 * 109.46789 * 304.99913 * 21 20 11 41 41 H 0.96706 * 114.00351 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.49723 * 178.75526 * 23 10 9 43 43 H 1.09000 * 109.52452 * 58.66796 * 23 10 9 44 44 H 1.09004 * 109.58550 * 246.20022 * 24 7 5 45 45 H 1.09006 * 109.58714 * 6.47385 * 24 7 5 46 46 H 1.08998 * 109.46705 * 89.99985 * 26 25 4 47 47 H 1.09005 * 109.47027 * 209.99930 * 26 25 4 48 48 H 1.09002 * 109.46787 * 329.99849 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6639 -0.0043 5 6 4.7439 1.5439 -0.0086 6 8 5.8575 1.0663 0.0952 7 7 4.5910 2.8776 -0.1275 8 6 3.2687 3.4585 -0.3976 9 6 3.3671 4.3646 -1.6288 10 6 4.4771 5.3958 -1.4106 11 7 4.5542 6.2828 -2.5740 12 6 4.8260 5.7657 -3.8124 13 1 5.4615 4.8977 -3.9077 14 6 4.2846 6.3572 -4.9456 15 7 3.1860 7.0759 -4.8519 16 14 5.1155 6.1332 -6.6037 17 1 4.5660 4.9273 -7.2738 18 1 4.8632 7.3276 -7.4491 19 1 6.5778 5.9665 -6.4061 20 6 4.3405 7.7231 -2.4124 21 6 5.6501 8.3881 -1.9837 22 8 6.6128 8.2641 -3.0324 23 6 5.8167 4.6790 -1.2264 24 6 5.7434 3.7785 0.0107 25 6 3.5660 -0.6970 0.0022 26 6 4.7802 -1.5897 0.0066 27 8 2.2831 -1.0929 0.0048 28 1 -0.3634 -1.0276 0.0049 29 1 -0.3634 0.5182 0.8874 30 1 -0.3634 0.5096 -0.8925 31 1 2.5510 2.6605 -0.5876 32 1 2.9445 4.0444 0.4624 33 1 3.6004 3.7618 -2.5064 34 1 2.4167 4.8764 -1.7807 35 1 4.2541 5.9834 -0.5201 36 1 2.8079 7.4895 -5.6436 37 1 4.0093 8.1498 -3.3591 38 1 3.5798 7.8944 -1.6508 39 1 5.4712 9.4434 -1.7775 40 1 6.0275 7.9011 -1.0845 41 1 7.4695 8.6640 -2.8292 42 1 6.6085 5.4162 -1.0933 43 1 6.0290 4.0717 -2.1063 44 1 5.6221 4.3926 0.9031 45 1 6.6583 3.1916 0.0928 46 1 5.0727 -1.7999 1.0354 47 1 4.5458 -2.5244 -0.5028 48 1 5.6001 -1.0903 -0.5095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098505808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:17 Heat of formation + Delta-G solvation = -25.684857 kcal Electronic energy + Delta-G solvation = -30742.901303 eV Core-core repulsion = 26608.022311 eV Total energy + Delta-G solvation = -4134.878992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.57242 -39.72133 -37.50661 -36.10994 -35.15452 -34.47229 -33.20001 -31.95629 -30.60357 -30.29573 -30.11994 -27.73060 -26.47840 -24.73004 -23.69964 -22.78305 -22.61266 -21.48390 -20.54378 -19.80059 -18.95120 -17.40580 -17.18025 -16.55360 -16.25257 -15.90118 -15.64619 -14.81645 -14.78463 -14.37547 -14.30516 -14.09489 -13.71054 -13.68121 -13.46035 -13.21173 -13.10415 -12.95187 -12.87944 -12.82324 -12.63661 -12.36938 -12.07641 -11.77452 -11.57749 -11.31088 -11.09648 -10.90132 -10.74269 -10.61918 -10.43206 -10.28915 -9.98379 -9.92560 -9.77695 -9.55237 -9.25682 -9.01507 -8.88917 -8.28979 -8.24020 -6.49938 -5.64978 -3.11796 1.02765 1.92187 2.34064 3.17160 3.38876 3.48138 3.55076 3.62577 3.77234 4.48877 4.61209 4.64585 4.87645 5.12682 5.18792 5.22327 5.24050 5.31666 5.34501 5.36359 5.50818 5.52128 5.65373 5.72369 5.74430 5.83761 5.86675 5.91335 5.99931 6.10201 6.13691 6.20209 6.35808 6.45904 6.55375 6.63604 6.73307 6.80303 6.87801 6.98865 7.20874 7.28969 7.37647 7.71025 7.77700 7.95910 8.31453 8.50369 8.68420 9.32223 9.98651 10.50411 11.38123 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.003339 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.608823 B = 8383.961880 C = 8858.929754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.451 5.451 4 C -0.064 4.064 5 C 0.598 3.402 6 O -0.548 6.548 7 N -0.583 5.583 8 C 0.078 3.922 9 C -0.132 4.132 10 C 0.175 3.825 11 N -0.572 5.572 12 C -0.227 4.227 13 H 0.057 0.943 14 C 0.011 3.989 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.293 1.293 18 H -0.292 1.292 19 H -0.280 1.280 20 C 0.139 3.861 21 C 0.060 3.940 22 O -0.544 6.544 23 C -0.137 4.137 24 C 0.113 3.887 25 C 0.033 3.967 26 C -0.072 4.072 27 O -0.199 6.199 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.250 0.750 37 H 0.110 0.890 38 H 0.034 0.966 39 H 0.018 0.982 40 H 0.021 0.979 41 H 0.349 0.651 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -11.750 13.105 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.181 5.181 4 C -0.183 4.183 5 C 0.386 3.614 6 O -0.428 6.428 7 N -0.314 5.314 8 C -0.045 4.045 9 C -0.172 4.172 10 C 0.068 3.932 11 N -0.291 5.291 12 C -0.357 4.357 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.540 5.540 16 Si 0.725 3.275 17 H -0.220 1.220 18 H -0.218 1.218 19 H -0.205 1.205 20 C 0.012 3.988 21 C -0.021 4.021 22 O -0.345 6.345 23 C -0.177 4.177 24 C -0.009 4.009 25 C -0.023 4.023 26 C -0.129 4.129 27 O -0.086 6.086 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.052 0.948 39 H 0.036 0.964 40 H 0.039 0.961 41 H 0.191 0.809 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.097 0.903 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.416 -11.593 12.729 17.553 hybrid contribution 1.031 -0.132 -0.596 1.198 sum -2.385 -11.725 12.134 17.041 Atomic orbital electron populations 1.20318 0.80889 1.04776 1.05497 1.26426 0.96569 0.78477 1.00343 1.70643 1.00946 1.28459 1.18099 1.21526 0.92089 0.92181 1.12510 1.16754 0.85962 0.81750 0.76952 1.90735 1.24532 1.74852 1.52671 1.47927 1.10757 1.04728 1.67964 1.22780 0.83782 0.99862 0.98031 1.22291 1.00685 0.97673 0.96512 1.20348 0.91666 0.90755 0.90470 1.43780 1.81675 1.00448 1.03176 1.18778 1.21805 1.12589 0.82535 0.92555 1.24852 0.95286 1.00922 0.97670 1.69969 1.18135 1.37560 1.28332 0.86430 0.80000 0.76664 0.84410 1.22007 1.21822 1.20524 1.21093 0.90136 0.84710 1.02839 1.23098 0.93283 0.96480 0.89218 1.86860 1.23772 1.81586 1.42241 1.22332 1.00395 0.98384 0.96589 1.21740 0.88748 0.91799 0.98638 1.23658 0.83779 0.94485 1.00359 1.20545 0.90267 0.97549 1.04490 1.84308 1.16422 1.37966 1.69938 0.89380 0.88277 0.88058 0.85243 0.92610 0.91467 0.91098 0.93634 0.93965 0.87230 0.94771 0.96353 0.96105 0.80881 0.91491 0.91363 0.92033 0.89690 0.89158 0.90321 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.19 2.18 8.30 -13.08 -0.11 2.07 16 3 N -0.45 -6.47 7.79 -7.65 -0.06 -6.53 16 4 C -0.06 -0.98 6.69 -83.02 -0.56 -1.54 16 5 C 0.60 10.38 7.68 -12.52 -0.10 10.28 16 6 O -0.55 -10.11 14.30 5.27 0.08 -10.03 16 7 N -0.58 -9.99 2.97 -174.04 -0.52 -10.51 16 8 C 0.08 1.31 6.12 -3.71 -0.02 1.28 16 9 C -0.13 -2.61 5.32 -26.60 -0.14 -2.76 16 10 C 0.18 3.57 2.59 -67.87 -0.18 3.40 16 11 N -0.57 -13.83 2.36 -165.59 -0.39 -14.22 16 12 C -0.23 -6.21 8.08 -15.06 -0.12 -6.33 16 13 H 0.06 1.59 6.87 -52.49 -0.36 1.23 16 14 C 0.01 0.31 4.90 -17.43 -0.09 0.22 16 15 N -0.90 -25.93 11.31 55.49 0.63 -25.31 16 16 Si 0.89 22.80 29.62 -169.99 -5.03 17.77 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 19 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 20 C 0.14 3.24 5.58 -4.04 -0.02 3.22 16 21 C 0.06 1.18 7.39 37.16 0.27 1.46 16 22 O -0.54 -11.59 13.40 -35.23 -0.47 -12.06 16 23 C -0.14 -2.59 5.31 -26.61 -0.14 -2.73 16 24 C 0.11 1.86 6.44 -3.71 -0.02 1.84 16 25 C 0.03 0.44 7.44 -35.08 -0.26 0.17 16 26 C -0.07 -0.73 9.82 36.01 0.35 -0.37 16 27 O -0.20 -2.39 10.73 6.52 0.07 -2.32 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.13 2.15 4.05 -63.11 -0.26 1.90 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.52 7.70 -51.93 -0.40 1.12 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.05 0.87 7.87 -51.93 -0.41 0.47 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.11 2.98 5.27 -51.93 -0.27 2.70 16 38 H 0.03 0.74 8.04 -51.93 -0.42 0.33 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.35 5.45 9.12 45.56 0.42 5.86 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.47 7.02 -51.93 -0.36 1.11 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.41 7.00 -51.93 -0.36 1.04 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.11 1.30 6.61 -51.93 -0.34 0.96 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -33.93 383.38 -7.23 -41.16 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.56 Total: 6.05 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.75 Total: 10.22 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.34 Total: -56.57 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.33 Total: -24.41 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.93 -7.23 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098505808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.476 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds