Wall clock time and date at job start Tue Mar 31 2020 19:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29933 * 125.37469 * 2 1 4 4 C 1.36074 * 108.47456 * 180.18961 * 3 2 1 5 5 C 1.47421 * 126.44987 * 179.86185 * 4 3 2 6 6 O 1.21610 * 119.99952 * 174.14638 * 5 4 3 7 7 N 1.34774 * 119.99666 * 354.15300 * 5 4 3 8 8 C 1.46923 * 120.63555 * 353.41181 * 7 5 4 9 9 C 1.53187 * 108.89342 * 233.51935 * 8 7 5 10 10 C 1.53070 * 109.29809 * 305.57678 * 9 8 7 11 11 N 1.46501 * 109.44400 * 181.23720 * 10 9 8 12 12 C 1.36930 * 119.99830 * 299.79728 * 11 10 9 13 13 H 1.08000 * 120.00633 * 327.95357 * 12 11 10 14 14 C 1.38822 * 119.99743 * 147.95496 * 12 11 10 15 15 N 1.31616 * 120.00202 * 336.21725 * 14 12 11 16 16 Si 1.86807 * 119.99704 * 156.21576 * 14 12 11 17 17 H 1.48502 * 109.46841 * 90.00156 * 16 14 12 18 18 H 1.48494 * 109.46830 * 209.99971 * 16 14 12 19 19 H 1.48497 * 109.47369 * 330.00251 * 16 14 12 20 20 C 1.46500 * 119.99863 * 119.79584 * 11 10 9 21 21 C 1.53000 * 109.47339 * 84.31002 * 20 11 10 22 22 O 1.42896 * 109.46936 * 64.99822 * 21 20 11 23 23 C 1.53041 * 109.65734 * 61.15502 * 10 9 8 24 24 C 1.46929 * 120.62889 * 173.39767 * 7 5 4 25 25 C 1.36089 * 107.10082 * 359.59835 * 4 3 2 26 26 C 1.50703 * 126.52570 * 180.27816 * 25 4 3 27 27 O 1.34045 * 125.37886 * 179.75089 * 2 1 3 28 28 H 1.08999 * 109.47349 * 180.27461 * 1 2 3 29 29 H 1.09001 * 109.47486 * 300.28091 * 1 2 3 30 30 H 1.09008 * 109.47206 * 60.27636 * 1 2 3 31 31 H 1.08998 * 109.58557 * 353.37600 * 8 7 5 32 32 H 1.08994 * 109.58736 * 113.65893 * 8 7 5 33 33 H 1.09000 * 109.49758 * 65.39093 * 9 8 7 34 34 H 1.09001 * 109.49675 * 185.48262 * 9 8 7 35 35 H 1.09004 * 109.34652 * 301.12844 * 10 9 8 36 36 H 0.96999 * 120.00062 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47313 * 204.31035 * 20 11 10 38 38 H 1.08998 * 109.47426 * 324.30574 * 20 11 10 39 39 H 1.09000 * 109.47112 * 185.00011 * 21 20 11 40 40 H 1.08999 * 109.46789 * 304.99913 * 21 20 11 41 41 H 0.96706 * 114.00351 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.49723 * 178.75526 * 23 10 9 43 43 H 1.09000 * 109.52452 * 58.66796 * 23 10 9 44 44 H 1.09004 * 109.58550 * 246.20022 * 24 7 5 45 45 H 1.09006 * 109.58714 * 6.47385 * 24 7 5 46 46 H 1.08998 * 109.46705 * 89.99985 * 26 25 4 47 47 H 1.09005 * 109.47027 * 209.99930 * 26 25 4 48 48 H 1.09002 * 109.46787 * 329.99849 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6639 -0.0043 5 6 4.7439 1.5439 -0.0086 6 8 5.8575 1.0663 0.0952 7 7 4.5910 2.8776 -0.1275 8 6 3.2687 3.4585 -0.3976 9 6 3.3671 4.3646 -1.6288 10 6 4.4771 5.3958 -1.4106 11 7 4.5542 6.2828 -2.5740 12 6 4.8260 5.7657 -3.8124 13 1 5.4615 4.8977 -3.9077 14 6 4.2846 6.3572 -4.9456 15 7 3.1860 7.0759 -4.8519 16 14 5.1155 6.1332 -6.6037 17 1 4.5660 4.9273 -7.2738 18 1 4.8632 7.3276 -7.4491 19 1 6.5778 5.9665 -6.4061 20 6 4.3405 7.7231 -2.4124 21 6 5.6501 8.3881 -1.9837 22 8 6.6128 8.2641 -3.0324 23 6 5.8167 4.6790 -1.2264 24 6 5.7434 3.7785 0.0107 25 6 3.5660 -0.6970 0.0022 26 6 4.7802 -1.5897 0.0066 27 8 2.2831 -1.0929 0.0048 28 1 -0.3634 -1.0276 0.0049 29 1 -0.3634 0.5182 0.8874 30 1 -0.3634 0.5096 -0.8925 31 1 2.5510 2.6605 -0.5876 32 1 2.9445 4.0444 0.4624 33 1 3.6004 3.7618 -2.5064 34 1 2.4167 4.8764 -1.7807 35 1 4.2541 5.9834 -0.5201 36 1 2.8079 7.4895 -5.6436 37 1 4.0093 8.1498 -3.3591 38 1 3.5798 7.8944 -1.6508 39 1 5.4712 9.4434 -1.7775 40 1 6.0275 7.9011 -1.0845 41 1 7.4695 8.6640 -2.8292 42 1 6.6085 5.4162 -1.0933 43 1 6.0290 4.0717 -2.1063 44 1 5.6221 4.3926 0.9031 45 1 6.6583 3.1916 0.0928 46 1 5.0727 -1.7999 1.0354 47 1 4.5458 -2.5244 -0.5028 48 1 5.6001 -1.0903 -0.5095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098505808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:16 Heat of formation + Delta-G solvation = -50.841062 kcal Electronic energy + Delta-G solvation = -30743.992158 eV Core-core repulsion = 26608.022311 eV Total energy + Delta-G solvation = -4135.969846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.53884 -41.08464 -39.10154 -37.68015 -36.38155 -35.96143 -34.07908 -33.77623 -32.12424 -31.90909 -30.92585 -29.47653 -27.64343 -26.35102 -25.09007 -24.29541 -23.81022 -22.66208 -22.10175 -21.39536 -20.27676 -18.77051 -18.19291 -18.14821 -17.95113 -17.20417 -16.87889 -16.66029 -16.15872 -16.04831 -15.61624 -15.30718 -15.20936 -14.85328 -14.66985 -14.46737 -14.40239 -14.25149 -14.17450 -13.75885 -13.57106 -13.53973 -13.35424 -13.19264 -13.03331 -13.00615 -12.74270 -12.57848 -12.45118 -12.33025 -12.15168 -11.84612 -11.76101 -11.60248 -11.39991 -11.21782 -10.70916 -10.61474 -10.33169 -9.93996 -9.55472 -8.50379 -7.74944 -5.23554 0.00184 0.90987 1.41720 1.44268 1.45490 1.55489 1.92385 2.16677 2.56764 2.84864 3.35177 3.48251 3.57026 3.59409 3.84211 3.98594 4.13144 4.20980 4.23478 4.32556 4.36973 4.44125 4.55955 4.57665 4.58982 4.67405 4.68776 4.69629 4.73196 4.79219 4.85392 4.90266 4.93793 5.04080 5.06205 5.14225 5.15415 5.17077 5.36134 5.49732 5.58128 5.71814 5.75435 5.87877 6.26945 6.49203 6.53311 7.00721 7.21335 7.28611 7.99740 8.45176 9.23359 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.003339 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.608823 B = 8383.961880 C = 8858.929754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.200 3.800 3 N -0.481 5.481 4 C -0.101 4.101 5 C 0.593 3.407 6 O -0.567 6.567 7 N -0.590 5.590 8 C 0.091 3.909 9 C -0.119 4.119 10 C 0.172 3.828 11 N -0.584 5.584 12 C -0.218 4.218 13 H 0.039 0.961 14 C -0.035 4.035 15 N -0.918 5.918 16 Si 0.940 3.060 17 H -0.291 1.291 18 H -0.293 1.293 19 H -0.283 1.283 20 C 0.132 3.868 21 C 0.068 3.932 22 O -0.576 6.576 23 C -0.123 4.123 24 C 0.120 3.880 25 C 0.041 3.959 26 C -0.071 4.071 27 O -0.195 6.195 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.246 0.754 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.374 0.626 42 H 0.071 0.929 43 H 0.032 0.968 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -12.695 15.054 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.008 4.008 3 N -0.211 5.211 4 C -0.219 4.219 5 C 0.382 3.618 6 O -0.448 6.448 7 N -0.321 5.321 8 C -0.031 4.031 9 C -0.159 4.159 10 C 0.065 3.935 11 N -0.303 5.303 12 C -0.349 4.349 13 H 0.057 0.943 14 C -0.230 4.230 15 N -0.565 5.565 16 Si 0.770 3.230 17 H -0.219 1.219 18 H -0.219 1.219 19 H -0.209 1.209 20 C 0.006 3.994 21 C -0.012 4.012 22 O -0.381 6.381 23 C -0.163 4.163 24 C -0.002 4.002 25 C -0.015 4.015 26 C -0.127 4.127 27 O -0.083 6.083 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.152 0.848 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.220 0.780 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.834 -12.527 14.700 19.691 hybrid contribution 1.144 0.101 -1.155 1.629 sum -2.690 -12.426 13.545 18.577 Atomic orbital electron populations 1.20644 0.77379 1.06864 1.06544 1.27424 0.98065 0.77639 0.97696 1.70494 1.00756 1.29867 1.19991 1.21405 0.92128 0.92944 1.15406 1.17056 0.86493 0.81873 0.76350 1.90710 1.25412 1.75123 1.53520 1.47999 1.10845 1.05018 1.68205 1.22663 0.83996 0.99537 0.96914 1.22107 0.99678 0.97439 0.96668 1.20530 0.92472 0.90650 0.89825 1.43941 1.81755 1.01460 1.03159 1.18750 1.20430 1.11578 0.84137 0.94329 1.25325 0.96026 1.01827 0.99839 1.70072 1.19131 1.38868 1.28418 0.85708 0.78904 0.76367 0.81989 1.21879 1.21931 1.20886 1.21074 0.92546 0.84309 1.01444 1.22891 0.91337 0.97834 0.89096 1.86777 1.25587 1.82358 1.43404 1.22132 0.99502 0.98164 0.96454 1.21697 0.88795 0.91550 0.98182 1.24100 0.84845 0.94156 0.98441 1.20640 0.88518 0.97890 1.05635 1.84354 1.16007 1.38058 1.69884 0.86808 0.86588 0.87363 0.84766 0.90657 0.95269 0.92513 0.91473 0.94508 0.90964 0.93555 0.93607 0.94279 0.77996 0.91081 0.94895 0.89225 0.89797 0.87475 0.87622 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 71.24 0.75 0.18 16 2 C 0.20 4.21 8.30 88.39 0.73 4.94 16 3 N -0.48 -13.31 7.79 -293.04 -2.28 -15.60 16 4 C -0.10 -3.06 6.69 40.41 0.27 -2.79 16 5 C 0.59 20.52 7.68 86.66 0.67 21.19 16 6 O -0.57 -20.93 14.30 -4.06 -0.06 -20.99 16 7 N -0.59 -19.92 2.97 -822.80 -2.45 -22.37 16 8 C 0.09 3.00 6.12 86.36 0.53 3.53 16 9 C -0.12 -4.79 5.32 30.68 0.16 -4.63 16 10 C 0.17 6.94 2.59 45.03 0.12 7.06 16 11 N -0.58 -28.43 2.36 -677.82 -1.60 -30.03 16 12 C -0.22 -12.20 8.08 84.04 0.68 -11.52 16 13 H 0.04 2.28 6.87 -2.91 -0.02 2.26 16 14 C -0.03 -1.99 4.90 84.86 0.42 -1.57 16 15 N -0.92 -54.54 11.31 21.65 0.24 -54.29 16 16 Si 0.94 47.93 29.62 68.60 2.03 49.96 16 17 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 18 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 19 H -0.28 -14.42 7.11 99.48 0.71 -13.72 16 20 C 0.13 6.14 5.58 86.38 0.48 6.62 16 21 C 0.07 2.58 7.39 71.98 0.53 3.11 16 22 O -0.58 -23.89 13.40 -148.98 -2.00 -25.89 16 23 C -0.12 -4.61 5.31 30.67 0.16 -4.45 16 24 C 0.12 3.81 6.44 86.36 0.56 4.37 16 25 C 0.04 1.04 7.44 25.19 0.19 1.22 16 26 C -0.07 -1.32 9.82 71.24 0.70 -0.62 16 27 O -0.20 -4.29 10.73 0.41 0.00 -4.29 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.14 4.42 4.05 -24.46 -0.10 4.32 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.03 1.37 7.70 -2.39 -0.02 1.35 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.07 2.44 7.87 -2.38 -0.02 2.42 16 36 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.07 3.98 5.27 -2.39 -0.01 3.97 16 38 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.37 10.99 9.12 -74.05 -0.68 10.32 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.03 1.45 7.02 -2.39 -0.02 1.44 16 44 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.08 2.71 7.00 -2.38 -0.02 2.70 16 46 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.09 2.15 6.61 -2.39 -0.02 2.13 16 Total: -1.00 -75.73 383.38 1.06 -74.67 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.22 Total: 22.21 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 6.94 Total: 26.62 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.08 Total: -122.29 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -2.05 Total: -51.17 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -75.73 1.06 -74.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098505808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.830 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds