Wall clock time and date at job start Tue Mar 31 2020 19:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34329 * 126.43797 * 2 1 4 4 N 1.34475 * 107.66493 * 180.02562 * 3 2 1 5 5 C 1.30255 * 108.70462 * 359.97438 * 4 3 2 6 6 C 1.50697 * 125.62257 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.47205 * 90.02250 * 6 5 4 8 8 C 1.42898 * 114.00186 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47171 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47194 * 179.97438 * 12 11 9 14 14 H 1.09003 * 110.88685 * 51.11672 * 13 12 11 15 15 C 1.54910 * 111.00439 * 287.19257 * 13 12 11 16 16 N 1.47420 * 104.83311 * 204.91696 * 15 13 12 17 17 C 1.36948 * 125.64844 * 204.08148 * 16 15 13 18 18 H 1.08003 * 119.99636 * 0.03209 * 17 16 15 19 19 C 1.38806 * 119.99858 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00098 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99864 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46765 * 60.00373 * 21 19 17 23 23 H 1.48500 * 109.47343 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47335 * 300.00660 * 21 19 17 25 25 C 1.47024 * 108.70560 * 24.13028 * 16 15 13 26 26 C 1.54329 * 107.26674 * 358.94041 * 25 16 15 27 27 H 1.08999 * 110.72041 * 96.17366 * 26 25 16 28 28 C 1.53002 * 110.86861 * 219.37491 * 26 25 16 29 29 O 1.33971 * 108.75774 * 0.22541 * 5 4 3 30 30 H 1.08999 * 109.47184 * 90.00122 * 1 2 3 31 31 H 1.09007 * 109.46839 * 210.00341 * 1 2 3 32 32 H 1.08999 * 109.47349 * 329.99457 * 1 2 3 33 33 H 1.07994 * 126.16966 * 0.05095 * 3 2 1 34 34 H 1.09001 * 109.47017 * 330.02514 * 6 5 4 35 35 H 1.08999 * 109.47472 * 210.02190 * 6 5 4 36 36 H 1.09002 * 109.47259 * 300.00293 * 8 7 6 37 37 H 1.09001 * 109.47074 * 60.00315 * 8 7 6 38 38 H 0.97005 * 119.99463 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47021 * 299.99722 * 12 11 9 40 40 H 1.09001 * 109.47001 * 59.99554 * 12 11 9 41 41 H 1.08997 * 110.37035 * 323.75886 * 15 13 12 42 42 H 1.09003 * 110.36753 * 86.07742 * 15 13 12 43 43 H 0.96999 * 119.99333 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.87989 * 239.52100 * 25 16 15 45 45 H 1.08999 * 109.87926 * 118.35666 * 25 16 15 46 46 H 1.08997 * 109.46925 * 173.61192 * 28 26 25 47 47 H 1.09002 * 109.47153 * 293.60964 * 28 26 25 48 48 H 1.08998 * 109.47063 * 53.60886 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6546 -0.0004 6 6 4.8005 -1.5338 -0.0014 7 8 5.1883 -1.8120 1.3456 8 6 6.3450 -2.6435 1.4575 9 6 6.6613 -2.8709 2.9133 10 8 5.9651 -2.3698 3.7705 11 7 7.7186 -3.6304 3.2626 12 6 8.0257 -3.8519 4.6777 13 6 9.2643 -4.7421 4.7975 14 1 10.0823 -4.3535 4.1909 15 6 8.9347 -6.2065 4.4142 16 7 9.9405 -7.0178 5.1237 17 6 10.3555 -8.2713 4.7604 18 1 9.9376 -8.7458 3.8848 19 6 11.3135 -8.9317 5.5172 20 7 11.8225 -8.3535 6.5844 21 14 11.8791 -10.6418 5.0220 22 1 12.4691 -10.5929 3.6601 23 1 12.8995 -11.1245 5.9869 24 1 10.7181 -11.5676 5.0255 25 6 10.4234 -6.2589 6.2867 26 6 9.6960 -4.8978 6.2796 27 1 8.8250 -4.9226 6.9345 28 6 10.6460 -3.7700 6.6880 29 8 2.3075 -1.0839 -0.0047 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9821 2.1112 0.0008 34 1 5.6144 -1.0229 -0.5157 35 1 4.5760 -2.4686 -0.5152 36 1 6.1522 -3.6012 0.9740 37 1 7.1912 -2.1560 0.9733 38 1 8.2757 -4.0309 2.5768 39 1 8.2179 -2.8945 5.1620 40 1 7.1795 -4.3402 5.1610 41 1 7.9310 -6.4694 4.7482 42 1 9.0257 -6.3463 3.3370 43 1 12.4917 -8.8152 7.1135 44 1 11.4995 -6.1046 6.2078 45 1 10.1905 -6.7990 7.2044 46 1 10.1439 -2.8102 6.5665 47 1 10.9360 -3.8989 7.7307 48 1 11.5347 -3.7975 6.0576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102139660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:52 Heat of formation + Delta-G solvation = -33.403671 kcal Electronic energy + Delta-G solvation = -28127.468815 eV Core-core repulsion = 23992.255111 eV Total energy + Delta-G solvation = -4135.213704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.69481 -39.89933 -38.33908 -37.66491 -35.09737 -34.67418 -33.17180 -32.96020 -30.75080 -30.44774 -29.37678 -27.54930 -25.92883 -25.52783 -24.82952 -22.75229 -22.69511 -21.48719 -20.80444 -20.02903 -19.24899 -17.91337 -17.61701 -17.07750 -16.73532 -16.65067 -16.54770 -15.59384 -15.34716 -15.09615 -14.70635 -14.56658 -14.22442 -13.82073 -13.77245 -13.57219 -13.39120 -13.33189 -12.92780 -12.82928 -12.55407 -12.50024 -12.33878 -11.80641 -11.68266 -11.67329 -11.40464 -11.22202 -10.90439 -10.81803 -10.79208 -10.26375 -10.20509 -10.03983 -10.00631 -9.91159 -9.68623 -9.54985 -9.11616 -9.00008 -8.61194 -6.84311 -5.72268 -3.05991 0.92908 2.02667 2.28814 2.56902 2.82550 3.38944 3.43339 3.44754 3.49971 4.01707 4.29928 4.47557 4.50302 4.56212 4.62546 4.71640 4.79844 4.86024 4.91183 5.00223 5.09337 5.12362 5.19924 5.31741 5.44589 5.52037 5.55696 5.64869 5.74998 5.85916 5.89270 6.01524 6.09162 6.17831 6.27489 6.36842 6.46582 6.49394 6.55693 6.62234 6.75399 6.93160 7.34154 7.47937 7.55160 7.63750 7.82726 8.19286 8.25105 9.20893 9.81306 10.47451 11.39160 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.001698 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.146701 B =16481.303088 C =17243.054458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.357 6.357 8 C 0.045 3.955 9 C 0.512 3.488 10 O -0.522 6.522 11 N -0.722 5.722 12 C 0.134 3.866 13 C -0.113 4.113 14 H 0.081 0.919 15 C 0.142 3.858 16 N -0.606 5.606 17 C -0.230 4.230 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.184 3.816 26 C -0.111 4.111 27 H 0.067 0.933 28 C -0.134 4.134 29 O -0.194 6.194 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.402 0.598 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.036 0.964 43 H 0.253 0.747 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 16.870 -14.923 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.184 4.184 4 N -0.189 5.189 5 C -0.019 4.019 6 C 0.083 3.917 7 O -0.274 6.274 8 C -0.035 4.035 9 C 0.296 3.704 10 O -0.398 6.398 11 N -0.375 5.375 12 C 0.011 3.989 13 C -0.132 4.132 14 H 0.099 0.901 15 C 0.015 3.985 16 N -0.332 5.332 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.059 3.941 26 C -0.131 4.131 27 H 0.086 0.914 28 C -0.192 4.192 29 O -0.080 6.080 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.237 0.763 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.189 17.423 -14.028 27.612 hybrid contribution 0.122 -1.575 -0.720 1.736 sum -16.067 15.848 -14.749 26.960 Atomic orbital electron populations 1.20320 0.83710 1.04735 1.03895 1.23592 0.95219 0.84523 1.05892 1.23129 0.87578 1.00536 1.07195 1.70410 1.23331 1.09052 1.16111 1.25508 0.83896 0.89924 1.02536 1.20483 0.89071 0.96498 0.85605 1.88075 1.45673 1.69770 1.23897 1.22289 0.89446 0.96079 0.95690 1.20070 0.81004 0.79181 0.90160 1.90748 1.48888 1.48486 1.51631 1.45938 1.30052 1.51875 1.09661 1.21422 0.97724 0.99542 0.80211 1.22682 0.95818 0.96098 0.98645 0.90078 1.21587 0.92827 0.88480 0.95581 1.44456 1.44973 1.15464 1.28350 1.19000 1.17886 0.90427 1.08520 0.90561 1.24803 0.99332 0.98722 0.97568 1.69954 1.31804 1.37307 1.17779 0.86205 0.78146 0.83978 0.77437 1.21208 1.21589 1.21215 1.21219 0.96437 0.85831 0.90584 1.22445 0.98703 0.98077 0.93848 0.91420 1.21692 0.99129 0.97024 1.01344 1.84392 1.17702 1.36616 1.69324 0.89628 0.90068 0.88723 0.79687 0.88341 0.89787 0.89505 0.89503 0.76329 0.91505 0.91284 0.96345 0.94624 0.93700 0.93293 0.94051 0.93635 0.92758 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.43 36.01 0.38 0.07 16 2 C -0.04 -0.34 7.39 -35.68 -0.26 -0.61 16 3 C -0.05 -0.43 11.80 -17.77 -0.21 -0.64 16 4 N -0.46 -5.59 11.29 -11.10 -0.13 -5.72 16 5 C 0.19 2.12 7.97 -12.95 -0.10 2.02 16 6 C 0.16 1.35 6.56 36.00 0.24 1.59 16 7 O -0.36 -4.25 9.86 -55.14 -0.54 -4.80 16 8 C 0.04 0.40 6.42 36.01 0.23 0.63 16 9 C 0.51 6.75 7.91 -10.98 -0.09 6.66 16 10 O -0.52 -9.52 16.50 -14.35 -0.24 -9.76 16 11 N -0.72 -8.55 5.50 -60.30 -0.33 -8.88 16 12 C 0.13 1.90 5.13 -4.05 -0.02 1.88 16 13 C -0.11 -1.80 2.49 -88.47 -0.22 -2.02 16 14 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 15 C 0.14 2.75 6.65 -2.53 -0.02 2.73 16 16 N -0.61 -15.07 3.39 -170.07 -0.58 -15.64 16 17 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 18 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -26.76 10.31 55.49 0.57 -26.18 16 21 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.18 4.34 4.97 -3.06 -0.02 4.33 16 26 C -0.11 -1.98 3.01 -88.78 -0.27 -2.25 16 27 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 28 C -0.13 -2.06 9.17 37.16 0.34 -1.72 16 29 O -0.19 -2.16 10.78 5.37 0.06 -2.10 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.19 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 39 H 0.07 0.95 8.09 -51.93 -0.42 0.54 16 40 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 41 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.05 1.28 7.02 -51.93 -0.36 0.91 16 45 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 46 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -37.26 400.85 -8.23 -45.49 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.79 Total: -1.17 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.27 Total: 5.91 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.46 Total: -56.43 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.72 Total: -16.66 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.26 -8.23 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102139660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.082 kcal (2) G-P(sol) polarization free energy of solvation -37.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds