Wall clock time and date at job start Tue Mar 31 2020 19:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34329 * 126.43797 * 2 1 4 4 N 1.34475 * 107.66493 * 180.02562 * 3 2 1 5 5 C 1.30255 * 108.70462 * 359.97438 * 4 3 2 6 6 C 1.50697 * 125.62257 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.47205 * 90.02250 * 6 5 4 8 8 C 1.42898 * 114.00186 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47171 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47194 * 179.97438 * 12 11 9 14 14 H 1.09003 * 110.88685 * 51.11672 * 13 12 11 15 15 C 1.54910 * 111.00439 * 287.19257 * 13 12 11 16 16 N 1.47420 * 104.83311 * 204.91696 * 15 13 12 17 17 C 1.36948 * 125.64844 * 204.08148 * 16 15 13 18 18 H 1.08003 * 119.99636 * 0.03209 * 17 16 15 19 19 C 1.38806 * 119.99858 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00098 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99864 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46765 * 60.00373 * 21 19 17 23 23 H 1.48500 * 109.47343 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47335 * 300.00660 * 21 19 17 25 25 C 1.47024 * 108.70560 * 24.13028 * 16 15 13 26 26 C 1.54329 * 107.26674 * 358.94041 * 25 16 15 27 27 H 1.08999 * 110.72041 * 96.17366 * 26 25 16 28 28 C 1.53002 * 110.86861 * 219.37491 * 26 25 16 29 29 O 1.33971 * 108.75774 * 0.22541 * 5 4 3 30 30 H 1.08999 * 109.47184 * 90.00122 * 1 2 3 31 31 H 1.09007 * 109.46839 * 210.00341 * 1 2 3 32 32 H 1.08999 * 109.47349 * 329.99457 * 1 2 3 33 33 H 1.07994 * 126.16966 * 0.05095 * 3 2 1 34 34 H 1.09001 * 109.47017 * 330.02514 * 6 5 4 35 35 H 1.08999 * 109.47472 * 210.02190 * 6 5 4 36 36 H 1.09002 * 109.47259 * 300.00293 * 8 7 6 37 37 H 1.09001 * 109.47074 * 60.00315 * 8 7 6 38 38 H 0.97005 * 119.99463 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47021 * 299.99722 * 12 11 9 40 40 H 1.09001 * 109.47001 * 59.99554 * 12 11 9 41 41 H 1.08997 * 110.37035 * 323.75886 * 15 13 12 42 42 H 1.09003 * 110.36753 * 86.07742 * 15 13 12 43 43 H 0.96999 * 119.99333 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.87989 * 239.52100 * 25 16 15 45 45 H 1.08999 * 109.87926 * 118.35666 * 25 16 15 46 46 H 1.08997 * 109.46925 * 173.61192 * 28 26 25 47 47 H 1.09002 * 109.47153 * 293.60964 * 28 26 25 48 48 H 1.08998 * 109.47063 * 53.60886 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6546 -0.0004 6 6 4.8005 -1.5338 -0.0014 7 8 5.1883 -1.8120 1.3456 8 6 6.3450 -2.6435 1.4575 9 6 6.6613 -2.8709 2.9133 10 8 5.9651 -2.3698 3.7705 11 7 7.7186 -3.6304 3.2626 12 6 8.0257 -3.8519 4.6777 13 6 9.2643 -4.7421 4.7975 14 1 10.0823 -4.3535 4.1909 15 6 8.9347 -6.2065 4.4142 16 7 9.9405 -7.0178 5.1237 17 6 10.3555 -8.2713 4.7604 18 1 9.9376 -8.7458 3.8848 19 6 11.3135 -8.9317 5.5172 20 7 11.8225 -8.3535 6.5844 21 14 11.8791 -10.6418 5.0220 22 1 12.4691 -10.5929 3.6601 23 1 12.8995 -11.1245 5.9869 24 1 10.7181 -11.5676 5.0255 25 6 10.4234 -6.2589 6.2867 26 6 9.6960 -4.8978 6.2796 27 1 8.8250 -4.9226 6.9345 28 6 10.6460 -3.7700 6.6880 29 8 2.3075 -1.0839 -0.0047 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9821 2.1112 0.0008 34 1 5.6144 -1.0229 -0.5157 35 1 4.5760 -2.4686 -0.5152 36 1 6.1522 -3.6012 0.9740 37 1 7.1912 -2.1560 0.9733 38 1 8.2757 -4.0309 2.5768 39 1 8.2179 -2.8945 5.1620 40 1 7.1795 -4.3402 5.1610 41 1 7.9310 -6.4694 4.7482 42 1 9.0257 -6.3463 3.3370 43 1 12.4917 -8.8152 7.1135 44 1 11.4995 -6.1046 6.2078 45 1 10.1905 -6.7990 7.2044 46 1 10.1439 -2.8102 6.5665 47 1 10.9360 -3.8989 7.7307 48 1 11.5347 -3.7975 6.0576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102139660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:51 Heat of formation + Delta-G solvation = -61.844017 kcal Electronic energy + Delta-G solvation = -28128.702081 eV Core-core repulsion = 23992.255111 eV Total energy + Delta-G solvation = -4136.446970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.39884 -40.93584 -39.66385 -38.66007 -36.03171 -35.84400 -34.66956 -33.72062 -32.52858 -31.44504 -30.33123 -28.53758 -27.66523 -26.43425 -25.98643 -24.32314 -23.38832 -22.19216 -21.93720 -21.58867 -20.70341 -18.93621 -18.58791 -18.36564 -17.79987 -17.49222 -17.30203 -16.90248 -16.42395 -16.22196 -15.87151 -15.61047 -15.49722 -15.28831 -14.72207 -14.53674 -14.39661 -14.17066 -14.09326 -13.88661 -13.43575 -13.40557 -13.27107 -13.11018 -13.07087 -12.98657 -12.83069 -12.62993 -12.45354 -12.42115 -11.96027 -11.81446 -11.65262 -11.55277 -11.39708 -11.35262 -10.88843 -10.84132 -10.67574 -10.08808 -9.76698 -8.87170 -7.82549 -5.18085 0.23686 1.36143 1.46875 1.49974 1.56214 1.59705 1.63455 1.98238 2.51076 2.83327 3.32193 3.35355 3.63032 3.69979 3.77481 3.85498 3.96048 3.97271 4.01100 4.10192 4.20681 4.27006 4.33371 4.39380 4.49370 4.51647 4.61648 4.62700 4.66462 4.75615 4.83463 4.87420 4.99094 4.99242 5.10300 5.14094 5.17109 5.25967 5.35017 5.38977 5.49303 5.50141 5.73217 5.83237 5.84628 6.22351 6.57151 6.62691 7.12493 7.24674 7.80691 8.45236 9.27437 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.001698 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.146701 B =16481.303088 C =17243.054458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.041 4.041 3 C -0.067 4.067 4 N -0.490 5.490 5 C 0.166 3.834 6 C 0.160 3.840 7 O -0.397 6.397 8 C 0.048 3.952 9 C 0.508 3.492 10 O -0.581 6.581 11 N -0.710 5.710 12 C 0.146 3.854 13 C -0.089 4.089 14 H 0.094 0.906 15 C 0.137 3.863 16 N -0.629 5.629 17 C -0.242 4.242 18 H 0.085 0.915 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.978 3.022 22 H -0.274 1.274 23 H -0.297 1.297 24 H -0.280 1.280 25 C 0.193 3.807 26 C -0.103 4.103 27 H 0.071 0.929 28 C -0.127 4.127 29 O -0.210 6.210 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.418 0.582 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.054 0.946 43 H 0.245 0.755 44 H 0.017 0.983 45 H -0.003 1.003 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.171 17.628 -17.402 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.205 4.205 4 N -0.221 5.221 5 C -0.040 4.040 6 C 0.083 3.917 7 O -0.316 6.316 8 C -0.030 4.030 9 C 0.294 3.706 10 O -0.460 6.460 11 N -0.364 5.364 12 C 0.021 3.979 13 C -0.108 4.108 14 H 0.112 0.888 15 C 0.012 3.988 16 N -0.355 5.355 17 C -0.371 4.371 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.806 3.194 22 H -0.200 1.200 23 H -0.223 1.223 24 H -0.206 1.206 25 C 0.068 3.932 26 C -0.123 4.123 27 H 0.089 0.911 28 C -0.185 4.185 29 O -0.097 6.097 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.227 0.773 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.256 0.744 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.015 0.985 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.078 18.181 -16.568 29.945 hybrid contribution 0.311 -1.797 0.039 1.825 sum -16.767 16.383 -16.529 28.683 Atomic orbital electron populations 1.20556 0.80695 1.05801 1.05432 1.24434 0.96861 0.83840 1.04230 1.23632 0.87051 1.02043 1.07778 1.70381 1.24861 1.09894 1.17008 1.26180 0.84739 0.90268 1.02846 1.20807 0.88692 0.97742 0.84442 1.88003 1.46884 1.70610 1.26115 1.22437 0.90065 0.97965 0.92562 1.20890 0.80024 0.77877 0.91759 1.90726 1.50820 1.50838 1.53643 1.45780 1.30078 1.51503 1.09030 1.21125 0.95975 0.98967 0.81795 1.22466 0.96983 0.94298 0.97063 0.88764 1.21782 0.91187 0.89741 0.96105 1.44788 1.45943 1.15550 1.29224 1.19446 1.17465 0.91690 1.08481 0.89749 1.25659 1.00039 1.02542 0.97877 1.70191 1.32348 1.38578 1.18924 0.85162 0.77450 0.79553 0.77218 1.19967 1.22317 1.20580 1.20962 0.95315 0.88303 0.88658 1.22325 0.98747 0.95631 0.95627 0.91093 1.21636 0.98547 0.97150 1.01142 1.84396 1.18125 1.37663 1.69555 0.87700 0.89960 0.86623 0.77299 0.86174 0.86877 0.86040 0.85830 0.74446 0.91013 0.92735 0.96695 0.92763 0.94542 0.96464 0.98470 0.90711 0.92899 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.24 0.74 0.28 16 2 C -0.04 -0.68 7.39 24.79 0.18 -0.50 16 3 C -0.07 -1.23 11.80 83.39 0.98 -0.24 16 4 N -0.49 -11.82 11.29 -303.83 -3.43 -15.26 16 5 C 0.17 3.66 7.97 88.34 0.70 4.36 16 6 C 0.16 2.37 6.56 71.24 0.47 2.84 16 7 O -0.40 -8.81 9.86 -129.94 -1.28 -10.09 16 8 C 0.05 0.71 6.42 71.24 0.46 1.17 16 9 C 0.51 12.37 7.91 87.66 0.69 13.07 16 10 O -0.58 -20.93 16.50 16.01 0.26 -20.67 16 11 N -0.71 -14.90 5.50 -463.07 -2.55 -17.45 16 12 C 0.15 3.83 5.13 86.38 0.44 4.27 16 13 C -0.09 -2.67 2.49 -9.40 -0.02 -2.69 16 14 H 0.09 2.66 8.05 -2.39 -0.02 2.64 16 15 C 0.14 5.14 6.65 86.86 0.58 5.72 16 16 N -0.63 -31.52 3.39 -691.98 -2.35 -33.87 16 17 C -0.24 -13.32 10.28 84.03 0.86 -12.45 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 19 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 20 N -0.95 -57.24 10.31 21.65 0.22 -57.01 16 21 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 C 0.19 9.39 4.97 86.73 0.43 9.82 16 26 C -0.10 -3.65 3.01 -9.60 -0.03 -3.67 16 27 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 28 C -0.13 -3.74 9.17 71.98 0.66 -3.08 16 29 O -0.21 -4.58 10.78 -3.71 -0.04 -4.62 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.42 6.18 8.47 -92.70 -0.79 5.39 16 39 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 40 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 41 H 0.02 0.59 7.91 -2.39 -0.02 0.57 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.02 0.93 7.02 -2.39 -0.02 0.92 16 45 H 0.00 -0.17 7.50 -2.39 -0.02 -0.19 16 46 H 0.07 1.78 8.09 -2.39 -0.02 1.77 16 47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.05 1.54 8.07 -2.39 -0.02 1.52 16 Total: -1.00 -85.98 400.85 0.66 -85.32 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.17 Total: 10.79 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 7.62 Total: 15.49 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -8.10 Total: -123.59 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -1.06 Total: -35.38 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -85.98 0.66 -85.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102139660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.476 kcal (2) G-P(sol) polarization free energy of solvation -85.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds