Wall clock time and date at job start Tue Mar 31 2020 21:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.46960 * 2 1 4 4 O 1.33485 * 126.83562 * 270.10730 * 3 2 1 5 5 N 1.20663 * 113.16216 * 180.30502 * 4 3 2 6 6 C 1.30015 * 112.29847 * 359.75609 * 5 4 3 7 7 C 1.50702 * 127.33662 * 180.02562 * 6 5 4 8 8 C 1.37368 * 126.82267 * 90.00351 * 3 2 1 9 9 C 1.47393 * 128.56586 * 0.02562 * 8 3 2 10 10 O 1.21613 * 119.99886 * 269.69513 * 9 8 3 11 11 N 1.34775 * 120.00360 * 89.69841 * 9 8 3 12 12 C 1.46498 * 120.00245 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47227 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.51382 * 305.00239 * 13 12 11 15 15 C 1.53298 * 109.51268 * 184.90184 * 13 12 11 16 16 N 1.47158 * 108.38562 * 187.77383 * 15 13 12 17 17 C 1.36937 * 120.98304 * 230.51632 * 16 15 13 18 18 H 1.07995 * 120.00124 * 153.74285 * 17 16 15 19 19 C 1.38808 * 119.99899 * 333.74083 * 17 16 15 20 20 N 1.31617 * 119.99997 * 160.04183 * 19 17 16 21 21 Si 1.86805 * 120.00196 * 340.04148 * 19 17 16 22 22 H 1.48508 * 109.47142 * 91.88643 * 21 19 17 23 23 H 1.48494 * 109.47499 * 211.89066 * 21 19 17 24 24 H 1.48500 * 109.47146 * 331.89393 * 21 19 17 25 25 C 1.47154 * 118.03437 * 50.53341 * 16 15 13 26 26 C 1.53297 * 108.38644 * 309.47010 * 25 16 15 27 27 O 1.42957 * 109.26924 * 52.27099 * 26 25 16 28 28 H 1.09006 * 109.47196 * 59.99678 * 1 2 3 29 29 H 1.08996 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47125 * 299.99313 * 1 2 3 31 31 H 1.09004 * 109.46678 * 240.00484 * 2 1 3 32 32 H 1.08992 * 109.46989 * 120.00853 * 2 1 3 33 33 H 1.08998 * 109.46978 * 269.99418 * 7 6 5 34 34 H 1.08994 * 109.47067 * 29.99728 * 7 6 5 35 35 H 1.08999 * 109.47229 * 149.99716 * 7 6 5 36 36 H 0.97005 * 119.99832 * 359.97438 * 11 9 8 37 37 H 1.09006 * 109.46432 * 60.00263 * 12 11 9 38 38 H 1.08999 * 109.47294 * 300.00736 * 12 11 9 39 39 H 1.08995 * 109.46724 * 60.00254 * 14 13 12 40 40 H 1.08995 * 109.46953 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.46905 * 300.00230 * 14 13 12 42 42 H 1.08998 * 109.68358 * 307.49591 * 15 13 12 43 43 H 1.09004 * 109.68188 * 68.01674 * 15 13 12 44 44 H 0.97007 * 119.99821 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.67886 * 69.18409 * 25 16 15 46 46 H 1.08993 * 109.68034 * 189.74226 * 25 16 15 47 47 H 1.08999 * 109.51537 * 172.22857 * 26 25 16 48 48 H 1.09004 * 109.50601 * 292.32632 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2972 2.1759 -1.0684 5 7 2.6940 3.2792 -0.7831 6 6 2.7611 3.4623 0.5023 7 6 3.2083 4.7061 1.2262 8 6 2.3068 2.1970 1.0996 9 6 2.1834 1.8462 2.5259 10 8 1.1413 2.0573 3.1160 11 7 3.2256 1.2916 3.1761 12 6 3.1031 0.9435 4.5938 13 6 4.4178 0.3342 5.0848 14 6 4.7944 -0.8529 4.1960 15 6 4.2523 -0.1422 6.5324 16 7 5.5719 -0.5491 7.0409 17 6 5.7499 -1.7641 7.6470 18 1 6.7208 -2.2368 7.6345 19 6 4.6823 -2.3882 8.2774 20 7 4.7209 -3.6830 8.5101 21 14 3.1905 -1.3903 8.7957 22 1 2.1819 -1.4053 7.7058 23 1 2.6013 -1.9820 10.0236 24 1 3.6025 0.0099 9.0695 25 6 6.6946 0.3884 6.8792 26 6 6.7411 0.8391 5.4147 27 8 5.4516 1.3201 5.0280 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 4.2834 4.6587 1.3998 34 1 2.9763 5.5821 0.6207 35 1 2.6888 4.7769 2.1818 36 1 4.0568 1.1229 2.7053 37 1 2.2977 0.2203 4.7220 38 1 2.8805 1.8413 5.1705 39 1 4.9137 -0.5130 3.1673 40 1 5.7312 -1.2861 4.5461 41 1 4.0066 -1.6049 4.2412 42 1 3.8579 0.6697 7.1434 43 1 3.5687 -0.9907 6.5638 44 1 3.9750 -4.1191 8.9510 45 1 6.5460 1.2538 7.5250 46 1 7.6287 -0.1090 7.1401 47 1 7.4759 1.6363 5.3022 48 1 7.0195 -0.0045 4.7830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108389496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:34 Heat of formation + Delta-G solvation = 4.059827 kcal Electronic energy + Delta-G solvation = -30702.851769 eV Core-core repulsion = 26569.262603 eV Total energy + Delta-G solvation = -4133.589165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.09207 -40.02150 -39.01157 -35.24087 -35.09182 -34.75739 -34.60909 -32.06015 -31.64456 -30.55714 -29.04768 -28.50419 -26.98763 -26.07943 -24.55726 -23.79393 -23.64562 -21.34828 -20.83956 -20.05048 -19.21095 -18.24979 -17.90505 -17.19802 -16.65717 -16.24335 -15.81473 -15.55912 -15.33532 -14.76585 -14.55719 -14.49664 -14.10979 -13.99373 -13.88322 -13.65516 -13.49533 -13.35870 -13.21613 -12.83202 -12.76043 -12.42274 -12.39177 -11.97068 -11.91357 -11.78763 -11.61697 -11.46953 -11.17951 -11.15357 -10.93456 -10.46383 -10.39140 -10.23805 -10.10072 -9.81116 -9.63897 -9.57917 -9.47320 -9.13463 -8.64541 -7.09799 -6.06122 -3.43723 1.06572 1.68449 2.28527 2.57863 3.15389 3.22734 3.42253 3.43692 3.87472 3.95919 3.97993 4.41583 4.55969 4.59034 4.66266 4.78447 4.85728 4.95306 5.09645 5.15206 5.19067 5.22433 5.23636 5.33243 5.36661 5.45340 5.48436 5.60728 5.65096 5.69204 5.73525 5.78264 5.82368 5.87225 5.91909 5.98136 6.14708 6.18076 6.31587 6.38521 6.42466 6.54154 6.68363 7.36918 7.54735 7.76903 7.98715 8.04010 8.19473 8.76961 9.57976 9.93784 11.09315 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.003251 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.071592 B = 8611.242268 C = 9315.932667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.048 4.048 3 C 0.022 3.978 4 O 0.096 5.904 5 N -0.357 5.357 6 C 0.056 3.944 7 C -0.079 4.079 8 C -0.247 4.247 9 C 0.596 3.404 10 O -0.527 6.527 11 N -0.704 5.704 12 C 0.134 3.866 13 C 0.089 3.911 14 C -0.165 4.165 15 C 0.109 3.891 16 N -0.603 5.603 17 C -0.262 4.262 18 H 0.089 0.911 19 C 0.027 3.973 20 N -0.905 5.905 21 Si 0.877 3.123 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.269 1.269 25 C 0.113 3.887 26 C 0.044 3.956 27 O -0.380 6.380 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.405 0.595 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.264 0.736 45 H 0.031 0.969 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 10.067 -17.312 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 C -0.042 4.042 4 O 0.035 5.965 5 N -0.064 5.064 6 C -0.106 4.106 7 C -0.136 4.136 8 C -0.254 4.254 9 C 0.380 3.620 10 O -0.404 6.404 11 N -0.356 5.356 12 C 0.010 3.990 13 C 0.047 3.953 14 C -0.223 4.223 15 C -0.018 4.018 16 N -0.328 5.328 17 C -0.390 4.390 18 H 0.106 0.894 19 C -0.173 4.173 20 N -0.547 5.547 21 Si 0.708 3.292 22 H -0.214 1.214 23 H -0.228 1.228 24 H -0.194 1.194 25 C -0.013 4.013 26 C -0.034 4.034 27 O -0.299 6.299 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.241 0.759 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.297 10.976 -17.879 21.237 hybrid contribution -0.473 -0.121 1.047 1.155 sum -3.770 10.855 -16.833 20.381 Atomic orbital electron populations 1.21799 0.92735 1.03206 1.03223 1.20278 0.97381 0.85664 1.05263 1.24694 0.98247 0.96145 0.85118 1.84522 1.61440 1.17597 1.32948 1.73617 1.17493 0.98734 1.16578 1.24761 1.00128 0.96720 0.88980 1.20242 1.02393 0.91229 0.99746 1.21939 1.12824 0.95505 0.95154 1.16861 0.83758 0.77480 0.83919 1.90836 1.28501 1.53390 1.67630 1.45960 1.15673 1.62123 1.11849 1.21462 0.96480 1.01013 0.80012 1.22248 0.86978 0.88573 0.97463 1.22235 1.04352 0.97967 0.97704 1.21914 0.89942 0.99155 0.90781 1.44305 1.03899 1.17054 1.67520 1.18884 0.98711 0.92323 1.29082 0.89375 1.25239 0.98027 0.95640 0.98387 1.69814 1.32387 1.07952 1.44586 0.87070 0.83282 0.81057 0.77838 1.21368 1.22846 1.19449 1.21631 0.92544 0.93321 0.93824 1.23092 0.84322 0.99031 0.96965 1.87847 1.17315 1.36435 1.88322 0.91958 0.90804 0.91504 0.88587 0.88226 0.89434 0.89964 0.89644 0.75852 0.89674 0.90370 0.93485 0.90136 0.91481 0.94578 0.89881 0.92595 0.95100 0.90982 0.89606 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 37.16 0.37 -0.80 16 2 C -0.05 -0.37 6.38 -27.88 -0.18 -0.55 16 3 C 0.02 0.23 6.80 -34.63 -0.24 -0.01 16 4 O 0.10 1.09 11.06 18.67 0.21 1.30 16 5 N -0.36 -4.44 12.01 34.78 0.42 -4.02 16 6 C 0.06 0.67 7.59 -79.76 -0.61 0.06 16 7 C -0.08 -0.73 10.49 36.01 0.38 -0.35 16 8 C -0.25 -3.02 6.24 -102.89 -0.64 -3.66 16 9 C 0.60 8.28 7.60 -12.54 -0.10 8.19 16 10 O -0.53 -9.12 17.11 5.27 0.09 -9.03 16 11 N -0.70 -9.09 5.19 -61.40 -0.32 -9.41 16 12 C 0.13 2.01 4.85 -4.05 -0.02 1.99 16 13 C 0.09 1.46 0.78 -90.46 -0.07 1.39 16 14 C -0.17 -2.53 7.87 37.16 0.29 -2.24 16 15 C 0.11 2.24 3.05 -3.53 -0.01 2.23 16 16 N -0.60 -13.46 2.36 -171.83 -0.40 -13.86 16 17 C -0.26 -6.91 10.10 -15.06 -0.15 -7.07 16 18 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 19 C 0.03 0.73 5.26 -17.43 -0.09 0.64 16 20 N -0.90 -26.65 13.97 55.49 0.78 -25.87 16 21 Si 0.88 21.59 24.28 -169.99 -4.13 17.46 16 22 H -0.29 -6.71 6.58 56.52 0.37 -6.34 16 23 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 25 C 0.11 2.07 6.74 -3.53 -0.02 2.05 16 26 C 0.04 0.67 6.60 37.31 0.25 0.91 16 27 O -0.38 -6.15 10.17 -35.23 -0.36 -6.51 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.41 4.66 6.98 -40.82 -0.28 4.37 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.58 6.58 -51.93 -0.34 0.24 16 40 H 0.08 1.40 6.12 -51.93 -0.32 1.08 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.04 0.77 6.86 -51.93 -0.36 0.42 16 43 H 0.08 1.86 4.60 -51.93 -0.24 1.62 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 1.28 7.96 -51.93 -0.41 0.86 16 47 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 0.81 6.26 -51.93 -0.32 0.48 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -31.99 384.15 -6.16 -38.15 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.39 Total: 3.21 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.84 Total: 2.79 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.47 Total: -53.16 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.06 Total: -14.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.13 Total: 17.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.99 -6.16 -38.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108389496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.209 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds