Wall clock time and date at job start Tue Mar 31 2020 19:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34333 * 126.44147 * 2 1 4 4 N 1.34470 * 107.66701 * 180.02562 * 3 2 1 5 5 C 1.30261 * 108.70441 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.61973 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47282 * 90.02209 * 6 5 4 8 8 C 1.42904 * 114.00034 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46741 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00615 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99760 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99970 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.49714 * 34.78914 * 12 11 9 14 14 C 1.53038 * 109.49849 * 154.88897 * 12 11 9 15 15 C 1.53038 * 109.53873 * 181.31475 * 14 12 11 16 16 C 1.53196 * 109.31556 * 298.63550 * 15 14 12 17 17 H 1.09000 * 109.69690 * 294.78029 * 16 15 14 18 18 C 1.52992 * 109.58807 * 174.42419 * 16 15 14 19 19 N 1.46917 * 108.77313 * 54.63179 * 16 15 14 20 20 C 1.36940 * 120.62892 * 126.41759 * 19 16 15 21 21 H 1.07998 * 120.00178 * 330.15047 * 20 19 16 22 22 C 1.38817 * 120.00131 * 150.15067 * 20 19 16 23 23 N 1.31615 * 119.99870 * 344.50009 * 22 20 19 24 24 Si 1.86796 * 119.99821 * 164.49352 * 22 20 19 25 25 H 1.48495 * 109.47517 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47069 * 120.00194 * 24 22 20 27 27 H 1.48503 * 109.47022 * 239.99966 * 24 22 20 28 28 C 1.46932 * 118.74434 * 306.39148 * 19 16 15 29 29 O 1.33961 * 108.75645 * 0.22884 * 5 4 3 30 30 H 1.09001 * 109.47697 * 89.99981 * 1 2 3 31 31 H 1.09003 * 109.46836 * 209.99453 * 1 2 3 32 32 H 1.08994 * 109.47367 * 329.99419 * 1 2 3 33 33 H 1.08000 * 126.16597 * 0.05706 * 3 2 1 34 34 H 1.09008 * 109.47369 * 330.02299 * 6 5 4 35 35 H 1.09001 * 109.47296 * 210.02321 * 6 5 4 36 36 H 1.08996 * 109.47170 * 60.00549 * 8 7 6 37 37 H 1.09001 * 109.47044 * 300.00006 * 8 7 6 38 38 H 0.97002 * 119.99908 * 359.72890 * 11 9 8 39 39 H 1.08997 * 109.45986 * 301.33821 * 14 12 11 40 40 H 1.08999 * 109.45846 * 61.29555 * 14 12 11 41 41 H 1.09006 * 109.49699 * 178.68305 * 15 14 12 42 42 H 1.08998 * 109.52268 * 58.60077 * 15 14 12 43 43 H 1.09005 * 109.46813 * 300.70707 * 18 16 15 44 44 H 1.09004 * 109.47677 * 60.70497 * 18 16 15 45 45 H 1.09003 * 109.47404 * 180.71289 * 18 16 15 46 46 H 0.96996 * 119.99845 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.58418 * 293.82920 * 28 19 16 48 48 H 1.08994 * 109.70699 * 173.46568 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5765 -0.6547 -0.0015 6 6 4.8004 -1.5339 -0.0029 7 8 5.1879 -1.8131 1.3439 8 6 6.3447 -2.6448 1.4554 9 6 6.6605 -2.8734 2.9110 10 8 5.9635 -2.3738 3.7686 11 7 7.7171 -3.6340 3.2600 12 6 8.0245 -3.8558 4.6751 13 1 7.0968 -3.9106 5.2447 14 6 8.7982 -5.1670 4.8303 15 6 9.0913 -5.4160 6.3116 16 6 9.9581 -4.2759 6.8553 17 1 10.9322 -4.2897 6.3664 18 6 10.1395 -4.4446 8.3650 19 7 9.2867 -2.9986 6.5795 20 6 9.0455 -2.1049 7.5887 21 1 8.8838 -2.4588 8.5961 22 6 9.0090 -0.7441 7.3168 23 7 9.4973 -0.2861 6.1836 24 14 8.2665 0.4368 8.5591 25 1 7.7917 -0.3238 9.7428 26 1 9.2952 1.4202 8.9834 27 1 7.1229 1.1531 7.9390 28 6 8.8792 -2.6979 5.2002 29 8 2.3075 -1.0839 -0.0066 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.9821 2.1113 0.0009 34 1 5.6146 -1.0225 -0.5166 35 1 4.5761 -2.4682 -0.5176 36 1 7.1909 -2.1569 0.9719 37 1 6.1519 -3.6021 0.9711 38 1 8.2718 -4.0374 2.5741 39 1 8.2022 -5.9894 4.4348 40 1 9.7370 -5.1019 4.2803 41 1 9.6219 -6.3616 6.4235 42 1 8.1541 -5.4569 6.8665 43 1 9.1640 -4.4356 8.8514 44 1 10.6377 -5.3927 8.5675 45 1 10.7459 -3.6256 8.7519 46 1 9.4720 0.6648 5.9938 47 1 9.7644 -2.5840 4.5743 48 1 8.2974 -1.7764 5.1814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132165328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:54 Heat of formation + Delta-G solvation = -32.113038 kcal Electronic energy + Delta-G solvation = -29246.097510 eV Core-core repulsion = 25110.939771 eV Total energy + Delta-G solvation = -4135.157738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.52279 -39.61565 -38.12704 -37.21352 -34.92330 -34.35434 -33.00326 -32.77569 -31.00229 -29.91292 -29.63750 -27.57531 -25.78607 -25.30534 -24.69156 -22.52805 -22.24933 -21.31254 -20.86968 -20.04786 -19.23682 -17.68596 -17.37102 -16.71737 -16.52456 -16.33203 -16.19160 -15.34685 -15.06322 -14.74936 -14.72537 -14.05317 -13.79758 -13.75381 -13.66701 -13.44089 -13.33862 -13.23328 -12.79753 -12.65695 -12.36764 -12.29343 -12.07858 -11.83261 -11.49276 -11.41071 -11.09183 -10.84819 -10.71205 -10.67359 -10.49692 -10.36242 -10.21587 -10.02126 -9.91844 -9.71827 -9.42037 -9.30678 -8.94035 -8.51979 -8.37248 -6.56261 -5.69512 -3.14287 1.10120 2.21979 2.46560 2.99256 3.12775 3.46762 3.54835 3.56279 3.72535 4.25889 4.45615 4.58643 4.68310 4.74448 4.81497 4.95052 5.02330 5.03327 5.11498 5.19809 5.27210 5.36543 5.39913 5.52604 5.60206 5.60353 5.69798 5.80465 5.99119 6.06600 6.11941 6.29148 6.32095 6.41537 6.47676 6.52262 6.64060 6.69774 6.76303 6.96388 7.07743 7.15751 7.35322 7.52487 7.77795 7.89162 7.94199 8.54921 8.65787 9.29391 9.93641 10.48871 11.38763 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.002611 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.330270 B =10720.773091 C =12217.578092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.042 4.042 3 C -0.044 4.044 4 N -0.457 5.457 5 C 0.190 3.810 6 C 0.161 3.839 7 O -0.354 6.354 8 C 0.047 3.953 9 C 0.509 3.491 10 O -0.509 6.509 11 N -0.719 5.719 12 C 0.118 3.882 13 H 0.082 0.918 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.136 4.136 19 N -0.583 5.583 20 C -0.254 4.254 21 H 0.070 0.930 22 C 0.007 3.993 23 N -0.899 5.899 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.288 1.288 28 C 0.168 3.832 29 O -0.195 6.195 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.392 0.608 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.252 0.748 47 H 0.017 0.983 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 -7.315 -16.633 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.183 4.183 4 N -0.187 5.187 5 C -0.017 4.017 6 C 0.083 3.917 7 O -0.272 6.272 8 C -0.033 4.033 9 C 0.292 3.708 10 O -0.383 6.383 11 N -0.372 5.372 12 C 0.013 3.987 13 H 0.100 0.900 14 C -0.153 4.153 15 C -0.166 4.166 16 C 0.058 3.942 17 H 0.042 0.958 18 C -0.194 4.194 19 N -0.307 5.307 20 C -0.383 4.383 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.543 5.543 24 Si 0.729 3.271 25 H -0.202 1.202 26 H -0.218 1.218 27 H -0.215 1.215 28 C 0.041 3.959 29 O -0.082 6.082 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.225 0.775 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.035 0.965 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.497 -6.389 -15.848 20.054 hybrid contribution -0.559 0.142 -0.076 0.582 sum -11.056 -6.247 -15.924 20.368 Atomic orbital electron populations 1.20296 0.83786 1.04683 1.03743 1.23558 0.95159 0.84568 1.06266 1.23138 0.87613 1.00532 1.06995 1.70430 1.23266 1.09077 1.15971 1.25541 0.83841 0.89961 1.02364 1.20472 0.89037 0.96252 0.85922 1.88115 1.45690 1.69847 1.23515 1.22303 0.89316 0.95453 0.96239 1.19981 0.81362 0.79583 0.89845 1.90795 1.48976 1.47161 1.51325 1.45943 1.29827 1.52084 1.09356 1.22006 1.00149 0.97265 0.79250 0.89999 1.21673 0.99535 0.96220 0.97919 1.22050 1.00977 0.98795 0.94787 1.20486 0.93105 0.86564 0.94013 0.95761 1.21802 1.01418 0.99642 0.96527 1.44020 1.65800 1.16086 1.04763 1.19158 1.42743 0.86120 0.90284 0.91224 1.25090 0.99581 0.97267 0.97289 1.69998 1.46712 1.12977 1.24620 0.86278 0.78799 0.81179 0.80834 1.20224 1.21807 1.21458 1.21069 0.94992 0.95372 0.84463 1.84374 1.17739 1.36626 1.69444 0.89749 0.90153 0.88770 0.79721 0.88399 0.90049 0.89659 0.90130 0.77475 0.93091 0.92240 0.92681 0.92071 0.92822 0.94378 0.91971 0.93759 0.96470 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.43 36.01 0.38 -0.04 16 2 C -0.04 -0.46 7.39 -35.69 -0.26 -0.72 16 3 C -0.04 -0.52 11.80 -17.77 -0.21 -0.73 16 4 N -0.46 -6.82 11.29 -11.10 -0.13 -6.94 16 5 C 0.19 2.61 7.97 -12.95 -0.10 2.51 16 6 C 0.16 1.76 6.56 36.00 0.24 2.00 16 7 O -0.35 -5.41 9.86 -55.14 -0.54 -5.96 16 8 C 0.05 0.57 6.42 36.00 0.23 0.80 16 9 C 0.51 8.98 7.88 -10.98 -0.09 8.89 16 10 O -0.51 -12.15 16.16 -14.35 -0.23 -12.38 16 11 N -0.72 -11.32 5.08 -53.69 -0.27 -11.59 16 12 C 0.12 2.29 2.61 -67.81 -0.18 2.12 16 13 H 0.08 1.84 7.57 -51.93 -0.39 1.44 16 14 C -0.12 -1.82 5.35 -26.69 -0.14 -1.97 16 15 C -0.13 -2.14 5.37 -26.61 -0.14 -2.28 16 16 C 0.16 3.39 3.50 -67.61 -0.24 3.15 16 17 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.58 7.95 37.15 0.30 -2.29 16 19 N -0.58 -14.68 2.99 -164.78 -0.49 -15.17 16 20 C -0.25 -7.06 8.57 -15.06 -0.13 -7.19 16 21 H 0.07 1.89 6.24 -52.49 -0.33 1.57 16 22 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 23 N -0.90 -27.19 11.23 55.49 0.62 -26.56 16 24 Si 0.90 22.99 29.58 -169.99 -5.03 17.97 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 28 C 0.17 4.10 4.86 -3.70 -0.02 4.09 16 29 O -0.20 -2.57 10.77 5.38 0.06 -2.51 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.39 4.47 8.60 -40.82 -0.35 4.12 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 46 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 2.71 6.15 -51.93 -0.32 2.39 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -38.63 393.86 -8.18 -46.82 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.65 Total: 1.94 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.46 Total: 8.45 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.27 Total: -60.27 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.72 Total: -20.85 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.63 -8.18 -46.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132165328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.704 kcal (2) G-P(sol) polarization free energy of solvation -38.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds