Wall clock time and date at job start Tue Mar 31 2020 19:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34333 * 126.44147 * 2 1 4 4 N 1.34470 * 107.66701 * 180.02562 * 3 2 1 5 5 C 1.30261 * 108.70441 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.61973 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47282 * 90.02209 * 6 5 4 8 8 C 1.42904 * 114.00034 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46741 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00615 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99760 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99970 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.49714 * 34.78914 * 12 11 9 14 14 C 1.53038 * 109.49849 * 154.88897 * 12 11 9 15 15 C 1.53038 * 109.53873 * 181.31475 * 14 12 11 16 16 C 1.53196 * 109.31556 * 298.63550 * 15 14 12 17 17 H 1.09000 * 109.69690 * 294.78029 * 16 15 14 18 18 C 1.52992 * 109.58807 * 174.42419 * 16 15 14 19 19 N 1.46917 * 108.77313 * 54.63179 * 16 15 14 20 20 C 1.36940 * 120.62892 * 126.41759 * 19 16 15 21 21 H 1.07998 * 120.00178 * 330.15047 * 20 19 16 22 22 C 1.38817 * 120.00131 * 150.15067 * 20 19 16 23 23 N 1.31615 * 119.99870 * 344.50009 * 22 20 19 24 24 Si 1.86796 * 119.99821 * 164.49352 * 22 20 19 25 25 H 1.48495 * 109.47517 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47069 * 120.00194 * 24 22 20 27 27 H 1.48503 * 109.47022 * 239.99966 * 24 22 20 28 28 C 1.46932 * 118.74434 * 306.39148 * 19 16 15 29 29 O 1.33961 * 108.75645 * 0.22884 * 5 4 3 30 30 H 1.09001 * 109.47697 * 89.99981 * 1 2 3 31 31 H 1.09003 * 109.46836 * 209.99453 * 1 2 3 32 32 H 1.08994 * 109.47367 * 329.99419 * 1 2 3 33 33 H 1.08000 * 126.16597 * 0.05706 * 3 2 1 34 34 H 1.09008 * 109.47369 * 330.02299 * 6 5 4 35 35 H 1.09001 * 109.47296 * 210.02321 * 6 5 4 36 36 H 1.08996 * 109.47170 * 60.00549 * 8 7 6 37 37 H 1.09001 * 109.47044 * 300.00006 * 8 7 6 38 38 H 0.97002 * 119.99908 * 359.72890 * 11 9 8 39 39 H 1.08997 * 109.45986 * 301.33821 * 14 12 11 40 40 H 1.08999 * 109.45846 * 61.29555 * 14 12 11 41 41 H 1.09006 * 109.49699 * 178.68305 * 15 14 12 42 42 H 1.08998 * 109.52268 * 58.60077 * 15 14 12 43 43 H 1.09005 * 109.46813 * 300.70707 * 18 16 15 44 44 H 1.09004 * 109.47677 * 60.70497 * 18 16 15 45 45 H 1.09003 * 109.47404 * 180.71289 * 18 16 15 46 46 H 0.96996 * 119.99845 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.58418 * 293.82920 * 28 19 16 48 48 H 1.08994 * 109.70699 * 173.46568 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5765 -0.6547 -0.0015 6 6 4.8004 -1.5339 -0.0029 7 8 5.1879 -1.8131 1.3439 8 6 6.3447 -2.6448 1.4554 9 6 6.6605 -2.8734 2.9110 10 8 5.9635 -2.3738 3.7686 11 7 7.7171 -3.6340 3.2600 12 6 8.0245 -3.8558 4.6751 13 1 7.0968 -3.9106 5.2447 14 6 8.7982 -5.1670 4.8303 15 6 9.0913 -5.4160 6.3116 16 6 9.9581 -4.2759 6.8553 17 1 10.9322 -4.2897 6.3664 18 6 10.1395 -4.4446 8.3650 19 7 9.2867 -2.9986 6.5795 20 6 9.0455 -2.1049 7.5887 21 1 8.8838 -2.4588 8.5961 22 6 9.0090 -0.7441 7.3168 23 7 9.4973 -0.2861 6.1836 24 14 8.2665 0.4368 8.5591 25 1 7.7917 -0.3238 9.7428 26 1 9.2952 1.4202 8.9834 27 1 7.1229 1.1531 7.9390 28 6 8.8792 -2.6979 5.2002 29 8 2.3075 -1.0839 -0.0066 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.9821 2.1113 0.0009 34 1 5.6146 -1.0225 -0.5166 35 1 4.5761 -2.4682 -0.5176 36 1 7.1909 -2.1569 0.9719 37 1 6.1519 -3.6021 0.9711 38 1 8.2718 -4.0374 2.5741 39 1 8.2022 -5.9894 4.4348 40 1 9.7370 -5.1019 4.2803 41 1 9.6219 -6.3616 6.4235 42 1 8.1541 -5.4569 6.8665 43 1 9.1640 -4.4356 8.8514 44 1 10.6377 -5.3927 8.5675 45 1 10.7459 -3.6256 8.7519 46 1 9.4720 0.6648 5.9938 47 1 9.7644 -2.5840 4.5743 48 1 8.2974 -1.7764 5.1814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132165328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:53 Heat of formation + Delta-G solvation = -63.073445 kcal Electronic energy + Delta-G solvation = -29247.440054 eV Core-core repulsion = 25110.939771 eV Total energy + Delta-G solvation = -4136.500282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.42688 -41.01804 -39.48225 -38.56549 -35.98762 -35.87517 -34.65746 -33.75492 -32.47256 -31.76255 -30.57499 -28.67832 -27.53056 -26.51388 -26.00411 -24.00798 -23.42140 -22.39340 -22.19621 -21.53701 -20.90281 -18.72709 -18.40783 -18.29541 -17.80195 -17.51731 -17.30663 -16.99479 -16.42854 -15.95862 -15.87857 -15.61514 -15.35740 -15.17443 -14.93544 -14.79136 -14.40894 -14.18831 -14.10830 -13.90278 -13.51170 -13.32932 -13.21676 -13.08915 -13.00713 -12.76267 -12.72296 -12.55850 -12.48810 -12.28090 -12.11922 -11.96761 -11.66857 -11.65395 -11.40594 -11.13202 -10.90357 -10.79047 -10.55843 -10.07066 -9.79507 -8.62155 -7.87002 -5.32785 0.20661 1.33978 1.37192 1.42590 1.49743 1.60447 1.64688 2.00783 2.48089 2.82868 3.27322 3.32843 3.64285 3.74335 3.81677 3.97042 4.00390 4.07262 4.11237 4.18118 4.20516 4.27880 4.32106 4.41112 4.46888 4.59827 4.62857 4.64554 4.72418 4.81879 4.90981 4.96538 5.01790 5.08604 5.10952 5.20089 5.22733 5.32044 5.34890 5.48469 5.55453 5.61947 5.70069 5.79580 5.86648 6.40691 6.60666 6.66832 7.15197 7.37432 7.89953 8.38424 9.17914 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.002611 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.330270 B =10720.773091 C =12217.578092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.039 4.039 3 C -0.070 4.070 4 N -0.495 5.495 5 C 0.166 3.834 6 C 0.159 3.841 7 O -0.403 6.403 8 C 0.055 3.945 9 C 0.498 3.502 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.132 3.868 13 H 0.046 0.954 14 C -0.105 4.105 15 C -0.119 4.119 16 C 0.153 3.847 17 H 0.024 0.976 18 C -0.130 4.130 19 N -0.604 5.604 20 C -0.248 4.248 21 H 0.074 0.926 22 C -0.055 4.055 23 N -0.932 5.932 24 Si 0.953 3.047 25 H -0.261 1.261 26 H -0.286 1.286 27 H -0.305 1.305 28 C 0.179 3.821 29 O -0.208 6.208 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.209 0.791 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.419 0.581 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.243 0.757 47 H 0.002 0.998 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.657 -10.342 -18.119 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.092 4.092 3 C -0.209 4.209 4 N -0.226 5.226 5 C -0.040 4.040 6 C 0.083 3.917 7 O -0.321 6.321 8 C -0.023 4.023 9 C 0.284 3.716 10 O -0.464 6.464 11 N -0.356 5.356 12 C 0.025 3.975 13 H 0.064 0.936 14 C -0.143 4.143 15 C -0.158 4.158 16 C 0.048 3.952 17 H 0.042 0.958 18 C -0.187 4.187 19 N -0.328 5.328 20 C -0.378 4.378 21 H 0.091 0.909 22 C -0.250 4.250 23 N -0.579 5.579 24 Si 0.782 3.218 25 H -0.185 1.185 26 H -0.213 1.213 27 H -0.233 1.233 28 C 0.052 3.948 29 O -0.095 6.095 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.226 0.774 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.152 0.848 38 H 0.256 0.744 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.020 0.980 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.677 -9.486 -17.365 22.484 hybrid contribution -0.510 1.057 0.380 1.234 sum -11.187 -8.429 -16.986 22.016 Atomic orbital electron populations 1.20559 0.80390 1.05791 1.05568 1.24463 0.96931 0.83740 1.04059 1.23641 0.87068 1.02150 1.07996 1.70391 1.25063 1.10167 1.17009 1.26185 0.84824 0.90218 1.02787 1.20838 0.88591 0.97950 0.84341 1.88037 1.46837 1.70864 1.26388 1.22414 0.89780 0.98125 0.91998 1.21154 0.80448 0.77969 0.91990 1.90763 1.51572 1.50038 1.53987 1.45708 1.29759 1.51534 1.08604 1.21495 0.97854 0.97344 0.80774 0.93603 1.21638 1.00270 0.94652 0.97743 1.21960 1.00053 0.98779 0.95037 1.20823 0.93435 0.85548 0.95414 0.95797 1.21741 1.00891 1.00937 0.95178 1.44328 1.66818 1.17339 1.04333 1.19485 1.40531 0.86666 0.91141 0.90857 1.25798 1.01143 0.99013 0.99045 1.70149 1.48930 1.12377 1.26425 0.85405 0.77485 0.79487 0.79412 1.18523 1.21268 1.23272 1.20764 0.94120 0.95315 0.84632 1.84379 1.17969 1.37562 1.69571 0.87385 0.89806 0.86811 0.77439 0.86538 0.86070 0.86614 0.84770 0.74369 0.89324 0.90404 0.88422 0.93193 0.93744 0.90157 0.94395 0.94762 0.98009 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.43 71.24 0.74 0.06 16 2 C -0.04 -0.83 7.39 24.79 0.18 -0.64 16 3 C -0.07 -1.69 11.80 83.40 0.98 -0.70 16 4 N -0.49 -15.16 11.29 -303.84 -3.43 -18.59 16 5 C 0.17 4.60 7.97 88.34 0.70 5.31 16 6 C 0.16 3.27 6.56 71.23 0.47 3.74 16 7 O -0.40 -12.13 9.86 -129.94 -1.28 -13.41 16 8 C 0.06 1.23 6.42 71.24 0.46 1.69 16 9 C 0.50 17.64 7.88 87.66 0.69 18.33 16 10 O -0.58 -29.53 16.16 16.00 0.26 -29.27 16 11 N -0.70 -21.33 5.08 -442.15 -2.25 -23.58 16 12 C 0.13 5.10 2.61 45.07 0.12 5.21 16 13 H 0.05 2.12 7.57 -2.39 -0.02 2.11 16 14 C -0.11 -2.97 5.35 30.62 0.16 -2.81 16 15 C -0.12 -3.65 5.37 30.67 0.16 -3.48 16 16 C 0.15 6.08 3.50 44.97 0.16 6.24 16 17 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 18 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16 19 N -0.60 -31.07 2.99 -675.23 -2.02 -33.08 16 20 C -0.25 -14.22 8.57 84.03 0.72 -13.50 16 21 H 0.07 4.07 6.24 -2.91 -0.02 4.05 16 22 C -0.05 -3.31 4.94 84.86 0.42 -2.89 16 23 N -0.93 -59.49 11.23 21.65 0.24 -59.25 16 24 Si 0.95 49.29 29.58 68.60 2.03 51.32 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.30 -16.46 7.11 99.48 0.71 -15.76 16 28 C 0.18 9.07 4.86 86.36 0.42 9.49 16 29 O -0.21 -5.45 10.77 -3.65 -0.04 -5.49 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.21 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.42 8.23 8.60 -92.71 -0.80 7.43 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 41 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.04 1.67 7.44 -2.38 -0.02 1.65 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.53 7.63 -2.39 -0.02 1.51 16 46 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 47 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.04 2.23 6.15 -2.39 -0.01 2.22 16 Total: -1.00 -94.74 393.86 0.65 -94.09 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.17 Total: 15.38 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.96 Total: 21.88 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -7.45 Total: -134.50 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -1.06 Total: -48.17 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Total: -94.74 0.65 -94.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132165328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.016 kcal (2) G-P(sol) polarization free energy of solvation -94.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds