Wall clock time and date at job start Tue Mar 31 2020 20:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34176 * 127.02005 * 2 1 4 4 O 1.34220 * 109.12454 * 179.97438 * 3 2 1 5 5 C 1.33657 * 110.90670 * 359.72098 * 4 3 2 6 6 C 1.36422 * 108.39442 * 0.45193 * 5 4 3 7 7 C 1.47374 * 127.19108 * 179.83807 * 6 5 4 8 8 O 1.21618 * 120.00329 * 179.68480 * 7 6 5 9 9 N 1.34778 * 119.99885 * 359.68238 * 7 6 5 10 10 C 1.46501 * 119.99776 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47802 * 324.99978 * 10 9 7 12 12 C 1.53004 * 109.47081 * 85.00173 * 10 9 7 13 13 C 1.53007 * 109.47006 * 204.99816 * 10 9 7 14 14 C 1.52995 * 109.47093 * 65.00287 * 13 10 9 15 15 H 1.09004 * 109.47127 * 55.00018 * 14 13 10 16 16 C 1.53000 * 109.47240 * 174.99783 * 14 13 10 17 17 N 1.46905 * 109.47133 * 294.99946 * 14 13 10 18 18 C 1.46902 * 110.99800 * 154.99741 * 17 14 13 19 19 C 1.50706 * 109.46577 * 180.02562 * 18 17 14 20 20 O 1.21288 * 120.00224 * 359.72334 * 19 18 17 21 21 N 1.34777 * 119.99766 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99970 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99992 * 0.02562 * 22 21 19 24 24 C 1.38956 * 120.00025 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99899 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00157 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47086 * 59.99766 * 26 24 22 28 28 H 1.48494 * 109.47285 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46819 * 300.00061 * 26 24 22 30 30 H 1.09001 * 109.47457 * 270.02657 * 1 2 3 31 31 H 1.08998 * 109.47648 * 30.02312 * 1 2 3 32 32 H 1.09005 * 109.47398 * 150.03248 * 1 2 3 33 33 H 1.08003 * 125.44175 * 359.97438 * 3 2 1 34 34 H 1.07996 * 125.80469 * 180.28947 * 5 4 3 35 35 H 0.96999 * 120.00375 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.47225 * 60.00053 * 12 10 9 37 37 H 1.09003 * 109.47224 * 179.97438 * 12 10 9 38 38 H 1.08992 * 109.46930 * 299.99752 * 12 10 9 39 39 H 1.09001 * 109.47241 * 305.00288 * 13 10 9 40 40 H 1.09003 * 109.46898 * 184.99839 * 13 10 9 41 41 H 1.09001 * 109.47129 * 300.00009 * 16 14 13 42 42 H 1.08996 * 109.47051 * 60.00373 * 16 14 13 43 43 H 1.09002 * 109.46808 * 179.97438 * 16 14 13 44 44 H 1.00891 * 110.99988 * 278.95156 * 17 14 13 45 45 H 1.09000 * 109.47263 * 60.00269 * 18 17 14 46 46 H 1.09001 * 109.47582 * 299.99548 * 18 17 14 47 47 H 0.96999 * 120.00043 * 0.02562 * 21 19 18 48 48 H 0.97005 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3148 1.0713 0.0000 4 8 3.5920 0.6589 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 2.3922 -1.1738 0.0007 7 6 1.9913 -2.5920 0.0011 8 8 0.8124 -2.8907 0.0007 9 7 2.9312 -3.5579 0.0017 10 6 2.5327 -4.9677 0.0015 11 1 1.6234 -5.0884 0.5903 12 6 2.2740 -5.4243 -1.4357 13 6 3.6517 -5.8141 0.6119 14 6 3.8256 -5.4429 2.0860 15 1 2.8711 -5.5470 2.6020 16 6 4.8565 -6.3735 2.7280 17 7 4.2893 -4.0528 2.1895 18 6 3.9166 -3.4687 3.4848 19 6 4.4073 -2.0454 3.5538 20 8 5.0127 -1.5666 2.6182 21 7 4.1779 -1.3063 4.6572 22 6 4.6247 -0.0117 4.7201 23 1 5.1602 0.4159 3.8854 24 6 4.3887 0.7502 5.8580 25 7 3.7375 0.2297 6.8738 26 14 4.9969 2.5143 5.9435 27 1 4.3795 3.3045 4.8481 28 1 4.6208 3.1047 7.2531 29 1 6.4746 2.5361 5.7974 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3634 -0.8903 -0.5133 33 1 1.9893 2.1011 -0.0004 34 1 4.5701 -1.2607 0.0133 35 1 3.8715 -3.3198 0.0024 36 1 3.1834 -5.3037 -2.0245 37 1 1.9779 -6.4734 -1.4359 38 1 1.4769 -4.8214 -1.8705 39 1 4.5827 -5.6255 0.0775 40 1 3.3937 -6.8701 0.5312 41 1 4.5125 -7.4050 2.6512 42 1 5.8110 -6.2694 2.2121 43 1 4.9807 -6.1087 3.7781 44 1 5.2849 -3.9915 2.0382 45 1 4.3694 -4.0489 4.2888 46 1 2.8320 -3.4842 3.5919 47 1 3.6973 -1.6905 5.4070 48 1 3.5724 0.7617 7.6680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135203534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:37 Heat of formation + Delta-G solvation = -67.681386 kcal Electronic energy + Delta-G solvation = -31010.251244 eV Core-core repulsion = 26873.551146 eV Total energy + Delta-G solvation = -4136.700098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.02829 -39.34534 -38.32997 -37.09879 -34.82086 -33.86354 -33.33932 -31.91126 -31.22901 -30.48419 -29.25187 -26.89513 -26.80624 -26.18712 -23.93221 -23.51295 -21.21455 -20.79805 -19.90820 -19.56226 -19.21298 -17.88139 -17.57364 -16.15602 -16.01302 -15.66917 -15.49612 -15.08260 -14.75314 -14.67931 -14.36838 -14.18138 -14.02551 -13.74124 -13.37212 -13.20023 -13.04876 -12.83352 -12.75666 -12.68880 -12.37419 -12.16713 -12.13472 -12.06755 -11.81488 -11.55604 -11.41895 -11.26765 -11.10976 -11.02079 -10.81003 -10.68899 -10.44761 -10.20622 -9.48628 -9.45837 -9.05084 -8.69845 -8.40153 -8.16562 -7.99265 -7.92265 -6.40615 -3.80965 1.94963 2.47974 3.19655 3.25630 3.29665 3.44739 3.61915 3.91512 3.94433 4.10136 4.33884 4.59616 4.95576 5.01683 5.11957 5.14400 5.18847 5.26809 5.30128 5.36336 5.45579 5.48827 5.54400 5.64568 5.70972 5.75362 5.81066 5.83412 5.91147 5.92127 6.02030 6.05150 6.09044 6.13699 6.22528 6.27463 6.29727 6.35473 6.52915 6.85141 6.96063 7.20315 7.47126 7.55641 7.63727 8.06352 8.07711 8.61250 8.77648 9.18424 9.55577 10.05536 10.77098 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.004726 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.585143 B = 5923.258047 C = 8020.704443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.136 4.136 3 C -0.056 4.056 4 O -0.171 6.171 5 C 0.068 3.932 6 C -0.245 4.245 7 C 0.597 3.403 8 O -0.559 6.559 9 N -0.693 5.693 10 C 0.154 3.846 11 H 0.081 0.919 12 C -0.164 4.164 13 C -0.115 4.115 14 C 0.081 3.919 15 H 0.077 0.923 16 C -0.182 4.182 17 N -0.658 5.658 18 C 0.052 3.948 19 C 0.445 3.555 20 O -0.584 6.584 21 N -0.562 5.562 22 C -0.295 4.295 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.928 3.072 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.199 0.801 34 H 0.209 0.791 35 H 0.404 0.596 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.345 0.655 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -9.992 -12.333 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C -0.122 4.122 4 O -0.066 6.066 5 C -0.003 4.003 6 C -0.249 4.249 7 C 0.386 3.614 8 O -0.440 6.440 9 N -0.344 5.344 10 C 0.049 3.951 11 H 0.099 0.901 12 C -0.222 4.222 13 C -0.153 4.153 14 C -0.029 4.029 15 H 0.095 0.905 16 C -0.241 4.241 17 N -0.290 5.290 18 C -0.081 4.081 19 C 0.230 3.770 20 O -0.469 6.469 21 N -0.198 5.198 22 C -0.425 4.425 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.755 3.245 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.216 0.784 34 H 0.225 0.775 35 H 0.241 0.759 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.165 0.835 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.793 -9.334 -13.093 16.179 hybrid contribution 0.977 0.206 1.592 1.879 sum -0.816 -9.128 -11.501 14.706 Atomic orbital electron populations 1.20150 0.89039 1.02311 1.02246 1.21285 0.96772 0.90811 1.04956 1.23530 0.80164 0.99379 1.09114 1.83782 1.29277 1.22838 1.70664 1.24418 0.98824 0.80634 0.96406 1.21207 0.93126 0.94006 1.16599 1.17160 0.85247 0.83867 0.75155 1.90685 1.17734 1.83585 1.51989 1.45643 1.09810 1.04717 1.74210 1.20707 0.97920 0.80880 0.95622 0.90070 1.22211 1.01907 1.01029 0.97062 1.21922 0.98947 0.99105 0.95351 1.21623 0.98263 0.87563 0.95479 0.90497 1.22512 0.99957 1.00368 1.01283 1.60246 1.21137 1.15766 1.31811 1.21666 1.01091 0.94957 0.90367 1.19717 0.85555 0.87302 0.84404 1.90433 1.45676 1.73149 1.37638 1.41849 1.50294 1.12448 1.15236 1.19598 1.33212 0.87562 1.02103 0.88020 1.25240 0.97161 1.00240 0.95239 1.69605 1.40879 1.37946 1.05909 0.85961 0.79151 0.82036 0.77335 1.19894 1.21026 1.19978 0.91549 0.92398 0.90379 0.78445 0.77472 0.75908 0.92745 0.92167 0.92172 0.91267 0.90473 0.92316 0.92422 0.92591 0.83530 0.94131 0.90081 0.77626 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.00 36.00 0.36 -0.86 16 2 C -0.14 -2.34 6.37 -102.50 -0.65 -3.00 16 3 C -0.06 -0.90 11.96 29.30 0.35 -0.55 16 4 O -0.17 -3.03 10.52 7.63 0.08 -2.95 16 5 C 0.07 1.16 10.90 30.08 0.33 1.49 16 6 C -0.24 -4.35 6.31 -103.28 -0.65 -5.01 16 7 C 0.60 10.38 7.78 -12.54 -0.10 10.29 16 8 O -0.56 -11.08 15.07 5.26 0.08 -11.00 16 9 N -0.69 -9.51 3.79 -54.89 -0.21 -9.72 16 10 C 0.15 1.79 2.57 -67.92 -0.17 1.62 16 11 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 12 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 13 C -0.11 -1.05 4.54 -26.73 -0.12 -1.17 16 14 C 0.08 0.87 2.59 -67.71 -0.18 0.69 16 15 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 16 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 17 N -0.66 -8.83 3.48 -107.98 -0.38 -9.21 16 18 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 19 C 0.44 9.73 7.82 -10.98 -0.09 9.64 16 20 O -0.58 -13.63 14.86 5.55 0.08 -13.55 16 21 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 22 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 23 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 26 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.26 6.91 -51.93 -0.36 0.90 16 33 H 0.20 2.42 8.06 -52.48 -0.42 1.99 16 34 H 0.21 3.14 7.28 -52.49 -0.38 2.75 16 35 H 0.40 5.25 6.56 -40.82 -0.27 4.98 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 43 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 44 H 0.35 4.68 8.17 -39.30 -0.32 4.36 16 45 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 46 H 0.08 1.39 8.06 -51.93 -0.42 0.98 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -31.63 399.51 -6.56 -38.19 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -7.38 Total: 20.40 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.50 Total: 3.60 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.08 Total: -56.77 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: 0.24 Total: -27.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.63 -6.56 -38.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135203534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.491 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds