Wall clock time and date at job start Tue Mar 31 2020 20:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34176 * 127.02005 * 2 1 4 4 O 1.34220 * 109.12454 * 179.97438 * 3 2 1 5 5 C 1.33657 * 110.90670 * 359.72098 * 4 3 2 6 6 C 1.36422 * 108.39442 * 0.45193 * 5 4 3 7 7 C 1.47374 * 127.19108 * 179.83807 * 6 5 4 8 8 O 1.21618 * 120.00329 * 179.68480 * 7 6 5 9 9 N 1.34778 * 119.99885 * 359.68238 * 7 6 5 10 10 C 1.46501 * 119.99776 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47802 * 324.99978 * 10 9 7 12 12 C 1.53004 * 109.47081 * 85.00173 * 10 9 7 13 13 C 1.53007 * 109.47006 * 204.99816 * 10 9 7 14 14 C 1.52995 * 109.47093 * 65.00287 * 13 10 9 15 15 H 1.09004 * 109.47127 * 55.00018 * 14 13 10 16 16 C 1.53000 * 109.47240 * 174.99783 * 14 13 10 17 17 N 1.46905 * 109.47133 * 294.99946 * 14 13 10 18 18 C 1.46902 * 110.99800 * 154.99741 * 17 14 13 19 19 C 1.50706 * 109.46577 * 180.02562 * 18 17 14 20 20 O 1.21288 * 120.00224 * 359.72334 * 19 18 17 21 21 N 1.34777 * 119.99766 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99970 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99992 * 0.02562 * 22 21 19 24 24 C 1.38956 * 120.00025 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99899 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00157 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47086 * 59.99766 * 26 24 22 28 28 H 1.48494 * 109.47285 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46819 * 300.00061 * 26 24 22 30 30 H 1.09001 * 109.47457 * 270.02657 * 1 2 3 31 31 H 1.08998 * 109.47648 * 30.02312 * 1 2 3 32 32 H 1.09005 * 109.47398 * 150.03248 * 1 2 3 33 33 H 1.08003 * 125.44175 * 359.97438 * 3 2 1 34 34 H 1.07996 * 125.80469 * 180.28947 * 5 4 3 35 35 H 0.96999 * 120.00375 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.47225 * 60.00053 * 12 10 9 37 37 H 1.09003 * 109.47224 * 179.97438 * 12 10 9 38 38 H 1.08992 * 109.46930 * 299.99752 * 12 10 9 39 39 H 1.09001 * 109.47241 * 305.00288 * 13 10 9 40 40 H 1.09003 * 109.46898 * 184.99839 * 13 10 9 41 41 H 1.09001 * 109.47129 * 300.00009 * 16 14 13 42 42 H 1.08996 * 109.47051 * 60.00373 * 16 14 13 43 43 H 1.09002 * 109.46808 * 179.97438 * 16 14 13 44 44 H 1.00891 * 110.99988 * 278.95156 * 17 14 13 45 45 H 1.09000 * 109.47263 * 60.00269 * 18 17 14 46 46 H 1.09001 * 109.47582 * 299.99548 * 18 17 14 47 47 H 0.96999 * 120.00043 * 0.02562 * 21 19 18 48 48 H 0.97005 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3148 1.0713 0.0000 4 8 3.5920 0.6589 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 2.3922 -1.1738 0.0007 7 6 1.9913 -2.5920 0.0011 8 8 0.8124 -2.8907 0.0007 9 7 2.9312 -3.5579 0.0017 10 6 2.5327 -4.9677 0.0015 11 1 1.6234 -5.0884 0.5903 12 6 2.2740 -5.4243 -1.4357 13 6 3.6517 -5.8141 0.6119 14 6 3.8256 -5.4429 2.0860 15 1 2.8711 -5.5470 2.6020 16 6 4.8565 -6.3735 2.7280 17 7 4.2893 -4.0528 2.1895 18 6 3.9166 -3.4687 3.4848 19 6 4.4073 -2.0454 3.5538 20 8 5.0127 -1.5666 2.6182 21 7 4.1779 -1.3063 4.6572 22 6 4.6247 -0.0117 4.7201 23 1 5.1602 0.4159 3.8854 24 6 4.3887 0.7502 5.8580 25 7 3.7375 0.2297 6.8738 26 14 4.9969 2.5143 5.9435 27 1 4.3795 3.3045 4.8481 28 1 4.6208 3.1047 7.2531 29 1 6.4746 2.5361 5.7974 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3634 -0.8903 -0.5133 33 1 1.9893 2.1011 -0.0004 34 1 4.5701 -1.2607 0.0133 35 1 3.8715 -3.3198 0.0024 36 1 3.1834 -5.3037 -2.0245 37 1 1.9779 -6.4734 -1.4359 38 1 1.4769 -4.8214 -1.8705 39 1 4.5827 -5.6255 0.0775 40 1 3.3937 -6.8701 0.5312 41 1 4.5125 -7.4050 2.6512 42 1 5.8110 -6.2694 2.2121 43 1 4.9807 -6.1087 3.7781 44 1 5.2849 -3.9915 2.0382 45 1 4.3694 -4.0489 4.2888 46 1 2.8320 -3.4842 3.5919 47 1 3.6973 -1.6905 5.4070 48 1 3.5724 0.7617 7.6680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135203534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:36 Heat of formation + Delta-G solvation = -89.241354 kcal Electronic energy + Delta-G solvation = -31011.186154 eV Core-core repulsion = 26873.551146 eV Total energy + Delta-G solvation = -4137.635008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.34902 -40.57534 -39.99411 -38.33099 -36.11474 -35.66459 -34.65227 -33.24617 -33.02694 -31.66809 -30.41720 -28.06535 -27.90675 -27.57323 -25.61897 -24.77637 -22.26751 -21.78424 -21.20183 -20.88411 -20.82632 -19.84235 -18.83919 -17.67275 -17.24546 -17.01424 -16.86327 -16.49477 -16.31295 -16.01695 -15.69348 -15.52914 -15.41035 -15.22150 -14.62422 -14.37744 -14.27398 -14.10082 -13.98477 -13.82998 -13.54752 -13.47950 -13.34945 -13.30032 -13.02937 -12.91462 -12.75510 -12.55483 -12.38595 -12.36069 -12.18557 -12.12021 -11.69065 -11.58373 -11.41835 -10.81637 -10.41610 -10.21109 -9.94152 -9.83065 -9.45740 -9.10949 -8.41996 -5.88742 0.60615 1.18113 1.39790 1.41169 1.51464 2.13317 2.19063 2.30365 2.44563 2.62925 3.00146 3.26719 3.61079 3.75359 3.78463 3.85710 4.12320 4.22647 4.29238 4.34887 4.41713 4.46931 4.48706 4.55396 4.62790 4.63479 4.66463 4.80058 4.82457 4.89580 4.97496 5.00222 5.04609 5.07966 5.12870 5.23158 5.30965 5.32433 5.43540 5.45144 5.59468 5.82757 5.96489 6.15116 6.16266 6.55727 6.64863 6.85450 7.18207 7.50288 7.63771 8.17028 8.75760 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.004726 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.585143 B = 5923.258047 C = 8020.704443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.166 4.166 3 C -0.053 4.053 4 O -0.185 6.185 5 C 0.064 3.936 6 C -0.266 4.266 7 C 0.589 3.411 8 O -0.592 6.592 9 N -0.677 5.677 10 C 0.149 3.851 11 H 0.057 0.943 12 C -0.156 4.156 13 C -0.103 4.103 14 C 0.081 3.919 15 H 0.066 0.934 16 C -0.175 4.175 17 N -0.660 5.660 18 C 0.068 3.932 19 C 0.446 3.554 20 O -0.597 6.597 21 N -0.581 5.581 22 C -0.318 4.318 23 H 0.083 0.917 24 C -0.017 4.017 25 N -0.927 5.927 26 Si 0.987 3.013 27 H -0.273 1.273 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.234 0.766 34 H 0.221 0.779 35 H 0.409 0.591 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.348 0.652 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.390 0.610 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -11.007 -13.046 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.168 4.168 3 C -0.118 4.118 4 O -0.080 6.080 5 C -0.007 4.007 6 C -0.270 4.270 7 C 0.378 3.622 8 O -0.476 6.476 9 N -0.327 5.327 10 C 0.045 3.955 11 H 0.075 0.925 12 C -0.214 4.214 13 C -0.141 4.141 14 C -0.028 4.028 15 H 0.084 0.916 16 C -0.233 4.233 17 N -0.293 5.293 18 C -0.064 4.064 19 C 0.233 3.767 20 O -0.482 6.482 21 N -0.218 5.218 22 C -0.448 4.448 23 H 0.101 0.899 24 C -0.216 4.216 25 N -0.569 5.569 26 Si 0.811 3.189 27 H -0.198 1.198 28 H -0.200 1.200 29 H -0.195 1.195 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.251 0.749 34 H 0.237 0.763 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.167 0.833 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.223 0.777 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.837 -10.399 -13.826 17.320 hybrid contribution 0.697 0.429 1.727 1.911 sum -0.140 -9.970 -12.099 15.678 Atomic orbital electron populations 1.20109 0.87993 1.03130 1.01795 1.21702 0.97897 0.91165 1.05998 1.24234 0.79328 1.00737 1.07476 1.83778 1.30248 1.23126 1.70877 1.24633 0.99057 0.80637 0.96389 1.21521 0.93794 0.94705 1.16991 1.17284 0.85308 0.84367 0.75282 1.90658 1.19009 1.84014 1.53885 1.45647 1.09389 1.05249 1.72456 1.20906 0.98095 0.79929 0.96614 0.92459 1.22136 1.01664 1.01881 0.95753 1.21891 0.98435 1.00017 0.93757 1.21694 0.98172 0.86133 0.96825 0.91573 1.22419 0.99722 1.00880 1.00316 1.60237 1.21328 1.17871 1.29836 1.21421 1.00529 0.91781 0.92706 1.20646 0.83938 0.88942 0.83132 1.90415 1.45799 1.74098 1.37838 1.41954 1.51429 1.12210 1.16226 1.19568 1.34108 0.89082 1.02010 0.89939 1.25973 0.97190 1.03715 0.94710 1.69683 1.41725 1.39199 1.06282 0.85075 0.78718 0.77590 0.77521 1.19849 1.20034 1.19510 0.92543 0.89221 0.91891 0.74936 0.76298 0.75358 0.91335 0.89780 0.94827 0.89770 0.87542 0.90402 0.91592 0.93810 0.83290 0.92436 0.90608 0.77727 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 10.00 71.23 0.71 -1.54 16 2 C -0.17 -5.75 6.37 -18.49 -0.12 -5.87 16 3 C -0.05 -1.66 11.96 66.89 0.80 -0.86 16 4 O -0.19 -6.55 10.52 4.37 0.05 -6.51 16 5 C 0.06 2.18 10.90 67.40 0.73 2.91 16 6 C -0.27 -9.63 6.31 -18.99 -0.12 -9.75 16 7 C 0.59 20.93 7.78 86.65 0.67 21.61 16 8 O -0.59 -24.30 15.07 -4.09 -0.06 -24.36 16 9 N -0.68 -18.32 3.79 -445.83 -1.69 -20.01 16 10 C 0.15 3.27 2.57 45.00 0.12 3.38 16 11 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 12 C -0.16 -2.93 9.48 71.98 0.68 -2.24 16 13 C -0.10 -1.55 4.54 30.60 0.14 -1.41 16 14 C 0.08 1.55 2.59 44.91 0.12 1.67 16 15 H 0.07 1.44 7.80 -2.38 -0.02 1.43 16 16 C -0.17 -2.71 9.16 71.98 0.66 -2.05 16 17 N -0.66 -16.84 3.48 -495.55 -1.72 -18.56 16 18 C 0.07 2.23 5.97 85.56 0.51 2.74 16 19 C 0.45 19.64 7.82 87.66 0.69 20.33 16 20 O -0.60 -27.95 14.86 -3.05 -0.05 -28.00 16 21 N -0.58 -29.21 5.29 -306.98 -1.62 -30.83 16 22 C -0.32 -17.65 9.68 84.04 0.81 -16.84 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 25 N -0.93 -50.96 13.05 21.66 0.28 -50.68 16 26 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 29 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 2.10 6.91 -2.38 -0.02 2.08 16 33 H 0.23 5.26 8.06 -2.91 -0.02 5.24 16 34 H 0.22 6.64 7.28 -2.91 -0.02 6.62 16 35 H 0.41 10.25 6.56 -92.71 -0.61 9.64 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 43 H 0.04 0.80 7.45 -2.39 -0.02 0.78 16 44 H 0.35 8.78 8.17 -89.70 -0.73 8.04 16 45 H 0.06 1.71 7.44 -2.39 -0.02 1.69 16 46 H 0.08 2.60 8.06 -2.39 -0.02 2.58 16 47 H 0.39 19.40 7.90 -92.71 -0.73 18.67 16 48 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -70.41 399.51 3.01 -67.40 By element: Atomic # 1 Polarization: 55.74 SS G_CDS: -1.07 Total: 54.67 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 6.87 Total: 11.63 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -4.75 Total: -120.08 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -0.06 Total: -58.87 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -70.41 3.01 -67.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135203534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.844 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds