Wall clock time and date at job start Tue Mar 31 2020 20:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34180 * 127.02223 * 2 1 4 4 O 1.34215 * 109.12565 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.90901 * 359.72220 * 4 3 2 6 6 C 1.36418 * 108.39527 * 0.44959 * 5 4 3 7 7 C 1.47369 * 127.19280 * 179.83539 * 6 5 4 8 8 O 1.21617 * 120.00312 * 179.68783 * 7 6 5 9 9 N 1.34784 * 120.00211 * 359.68506 * 7 6 5 10 10 C 1.46494 * 119.99882 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47494 * 325.00249 * 10 9 7 12 12 C 1.52996 * 109.47185 * 85.00249 * 10 9 7 13 13 C 1.53005 * 109.46878 * 205.00246 * 10 9 7 14 14 C 1.52997 * 109.47341 * 65.00097 * 13 10 9 15 15 H 1.09000 * 109.47140 * 305.00268 * 14 13 10 16 16 C 1.52993 * 109.47024 * 185.00159 * 14 13 10 17 17 N 1.46906 * 109.46907 * 65.00038 * 14 13 10 18 18 C 1.46900 * 110.99927 * 205.00040 * 17 14 13 19 19 C 1.50697 * 109.47124 * 179.97438 * 18 17 14 20 20 O 1.21291 * 119.99948 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99888 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99681 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00143 * 359.97438 * 22 21 19 24 24 C 1.38944 * 119.99633 * 180.02562 * 22 21 19 25 25 N 1.31420 * 120.00262 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 120.00078 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46703 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.46910 * 119.99783 * 26 24 22 29 29 H 1.48498 * 109.47246 * 240.00165 * 26 24 22 30 30 H 1.08997 * 109.47421 * 270.02876 * 1 2 3 31 31 H 1.08995 * 109.47047 * 30.03260 * 1 2 3 32 32 H 1.09001 * 109.46953 * 150.02650 * 1 2 3 33 33 H 1.07998 * 125.43618 * 359.97353 * 3 2 1 34 34 H 1.07999 * 125.80436 * 180.29233 * 5 4 3 35 35 H 0.96999 * 119.99696 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.47354 * 59.99920 * 12 10 9 37 37 H 1.08999 * 109.47287 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.47313 * 299.99981 * 12 10 9 39 39 H 1.09001 * 109.46827 * 304.99960 * 13 10 9 40 40 H 1.08994 * 109.46957 * 185.00526 * 13 10 9 41 41 H 1.08992 * 109.47715 * 60.00117 * 16 14 13 42 42 H 1.09004 * 109.46862 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46998 * 299.99586 * 16 14 13 44 44 H 1.00902 * 110.99915 * 328.95567 * 17 14 13 45 45 H 1.08997 * 109.47355 * 300.00567 * 18 17 14 46 46 H 1.09003 * 109.47178 * 60.00051 * 18 17 14 47 47 H 0.96997 * 120.00122 * 359.97438 * 21 19 18 48 48 H 0.97001 * 119.99631 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6589 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 2.3923 -1.1738 0.0007 7 6 1.9915 -2.5920 0.0010 8 8 0.8125 -2.8907 0.0006 9 7 2.9314 -3.5580 0.0016 10 6 2.5328 -4.9677 0.0025 11 1 1.6238 -5.0880 0.5919 12 6 2.2732 -5.4252 -1.4342 13 6 3.6521 -5.8137 0.6128 14 6 3.8270 -5.4417 2.0865 15 1 3.9971 -4.3685 2.1726 16 6 5.0262 -6.1961 2.6640 17 7 2.6142 -5.8065 2.8308 18 6 2.4703 -4.9831 4.0388 19 6 1.2177 -5.3847 4.7742 20 8 0.5144 -6.2701 4.3355 21 7 0.8796 -4.7606 5.9200 22 6 -0.2597 -5.1264 6.5893 23 1 -0.8863 -5.9142 6.1982 24 6 -0.6085 -4.4827 7.7702 25 7 0.1538 -3.5237 8.2459 26 14 -2.1612 -4.9805 8.6819 27 1 -2.8388 -6.0764 7.9435 28 1 -1.8059 -5.4478 10.0459 29 1 -3.0732 -3.8128 8.7804 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 1.9894 2.1010 -0.0004 34 1 4.5702 -1.2608 0.0133 35 1 3.8716 -3.3198 0.0023 36 1 3.1821 -5.3049 -2.0237 37 1 1.9771 -6.4742 -1.4337 38 1 1.4758 -4.8224 -1.8690 39 1 4.5828 -5.6255 0.0775 40 1 3.3942 -6.8697 0.5327 41 1 5.9260 -5.9255 2.1118 42 1 5.1505 -5.9314 3.7141 43 1 4.8560 -7.2693 2.5780 44 1 1.7955 -5.7357 2.2453 45 1 3.3351 -5.1319 4.6852 46 1 2.4043 -3.9323 3.7565 47 1 1.4426 -4.0533 6.2715 48 1 -0.0896 -3.0747 9.0705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135203536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:46 Heat of formation + Delta-G solvation = -68.930959 kcal Electronic energy + Delta-G solvation = -29595.904225 eV Core-core repulsion = 25459.149942 eV Total energy + Delta-G solvation = -4136.754283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.79289 -39.88305 -38.38471 -37.28652 -35.03587 -33.99802 -33.82997 -32.20758 -31.21682 -30.73612 -29.87256 -27.38708 -27.08289 -26.13740 -24.20959 -23.82908 -21.71790 -20.73410 -20.36074 -20.10721 -19.20842 -18.27640 -17.83063 -16.48257 -16.40260 -16.29789 -16.00286 -15.36656 -15.10587 -15.06622 -14.72012 -14.40449 -13.92303 -13.83131 -13.72157 -13.55574 -13.43077 -13.16873 -12.93763 -12.66998 -12.63147 -12.43085 -12.23838 -12.08554 -11.82540 -11.73736 -11.67859 -11.48941 -11.21436 -11.05655 -10.92572 -10.57102 -10.29971 -10.17021 -10.02978 -9.74944 -9.46412 -9.24025 -8.91859 -8.37815 -8.01075 -7.89826 -6.36393 -3.76753 1.10995 1.83488 2.66238 2.96758 3.20415 3.24501 3.30400 3.38338 3.97319 4.14418 4.24596 4.36126 4.39566 4.49398 4.71612 4.81527 4.98959 5.06269 5.14998 5.20811 5.25994 5.30485 5.39248 5.39886 5.52555 5.58956 5.63731 5.65835 5.74426 5.77346 5.78508 5.84739 5.85603 5.95773 6.02821 6.05765 6.09501 6.28783 6.31153 6.36580 6.39412 6.70545 7.29970 7.33792 7.60775 7.72456 8.12433 8.12513 8.67313 9.23728 9.60365 10.12120 10.81631 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008838 B = 0.003236 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.320338 B = 8650.344082 C =10449.751324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.129 4.129 3 C -0.048 4.048 4 O -0.172 6.172 5 C 0.018 3.982 6 C -0.231 4.231 7 C 0.585 3.415 8 O -0.523 6.523 9 N -0.723 5.723 10 C 0.136 3.864 11 H 0.094 0.906 12 C -0.160 4.160 13 C -0.129 4.129 14 C 0.082 3.918 15 H 0.041 0.959 16 C -0.140 4.140 17 N -0.663 5.663 18 C 0.053 3.947 19 C 0.442 3.558 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.296 4.296 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.208 0.792 34 H 0.209 0.791 35 H 0.394 0.606 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.349 0.651 45 H 0.084 0.916 46 H 0.039 0.961 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.688 7.329 -19.490 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.114 4.114 4 O -0.067 6.067 5 C -0.053 4.053 6 C -0.235 4.235 7 C 0.372 3.628 8 O -0.400 6.400 9 N -0.375 5.375 10 C 0.032 3.968 11 H 0.112 0.888 12 C -0.219 4.219 13 C -0.167 4.167 14 C -0.029 4.029 15 H 0.058 0.942 16 C -0.198 4.198 17 N -0.298 5.298 18 C -0.080 4.080 19 C 0.228 3.772 20 O -0.465 6.465 21 N -0.202 5.202 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.224 0.776 34 H 0.225 0.775 35 H 0.228 0.772 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.170 0.830 45 H 0.102 0.898 46 H 0.057 0.943 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.828 6.282 -19.286 23.480 hybrid contribution -0.203 1.204 0.508 1.323 sum 11.625 7.486 -18.778 23.320 Atomic orbital electron populations 1.20265 0.88194 1.03111 1.03033 1.21465 0.97425 0.90327 1.03831 1.23728 0.79560 0.99763 1.08371 1.83772 1.29753 1.22242 1.70960 1.24353 0.98641 0.81299 1.00970 1.21462 0.93405 0.94368 1.14289 1.17277 0.85695 0.83707 0.76091 1.90817 1.17197 1.83115 1.48855 1.45941 1.09067 1.06199 1.76316 1.21106 0.99208 0.79235 0.97278 0.88785 1.22144 1.01911 1.01970 0.95852 1.22111 0.98211 1.01256 0.95102 1.21537 0.92076 0.97342 0.91914 0.94153 1.21796 0.95755 1.01359 1.00865 1.60228 1.04964 1.56587 1.07974 1.21684 0.98595 0.94602 0.93143 1.19815 0.87898 0.85909 0.83593 1.90520 1.54368 1.33245 1.68414 1.41860 1.23694 1.33988 1.20631 1.19757 1.00559 1.18443 1.03850 0.87890 1.25250 0.99342 0.96120 0.97279 1.69629 1.38509 1.24030 1.22319 0.85809 0.81047 0.78526 0.79030 1.19201 1.20772 1.20796 0.90796 0.91752 0.89906 0.77578 0.77469 0.77178 0.92605 0.91234 0.92042 0.90764 0.88986 0.93031 0.92588 0.91833 0.82953 0.89763 0.94256 0.77554 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.00 36.00 0.36 -0.65 16 2 C -0.13 -1.47 6.37 -102.49 -0.65 -2.13 16 3 C -0.05 -0.43 11.96 29.30 0.35 -0.08 16 4 O -0.17 -1.58 10.52 7.64 0.08 -1.50 16 5 C 0.02 0.15 11.61 30.08 0.35 0.50 16 6 C -0.23 -2.66 6.31 -103.28 -0.65 -3.31 16 7 C 0.58 7.77 7.78 -12.54 -0.10 7.67 16 8 O -0.52 -9.12 15.07 5.26 0.08 -9.04 16 9 N -0.72 -7.14 4.44 -54.90 -0.24 -7.39 16 10 C 0.14 1.45 2.48 -67.93 -0.17 1.28 16 11 H 0.09 1.35 5.72 -51.93 -0.30 1.06 16 12 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 13 C -0.13 -1.18 4.34 -26.73 -0.12 -1.30 16 14 C 0.08 0.95 2.59 -67.71 -0.18 0.78 16 15 H 0.04 0.46 7.28 -51.93 -0.38 0.08 16 16 C -0.14 -1.50 9.41 37.15 0.35 -1.15 16 17 N -0.66 -10.96 5.93 -108.00 -0.64 -11.60 16 18 C 0.05 0.98 5.97 -4.98 -0.03 0.95 16 19 C 0.44 10.99 7.82 -10.98 -0.09 10.90 16 20 O -0.58 -16.49 15.78 5.55 0.09 -16.40 16 21 N -0.56 -14.96 5.29 -10.97 -0.06 -15.01 16 22 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 23 H 0.10 3.13 7.16 -52.49 -0.38 2.75 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -25.25 13.05 55.50 0.72 -24.52 16 26 Si 0.93 21.67 29.55 -169.99 -5.02 16.65 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.09 6.91 -51.93 -0.36 0.73 16 33 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.21 0.80 7.47 -52.49 -0.39 0.41 16 35 H 0.39 2.60 7.57 -40.82 -0.31 2.29 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.35 6.25 6.11 -39.29 -0.24 6.01 16 45 H 0.08 1.45 7.44 -51.93 -0.39 1.07 16 46 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 47 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -36.12 400.99 -6.64 -42.76 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -7.23 Total: 15.94 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.46 Total: 4.08 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.22 Total: -58.52 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.25 Total: -26.94 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.12 -6.64 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135203536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.174 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds