Wall clock time and date at job start Tue Mar 31 2020 20:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34180 * 127.02223 * 2 1 4 4 O 1.34215 * 109.12565 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.90901 * 359.72220 * 4 3 2 6 6 C 1.36418 * 108.39527 * 0.44959 * 5 4 3 7 7 C 1.47369 * 127.19280 * 179.83539 * 6 5 4 8 8 O 1.21617 * 120.00312 * 179.68783 * 7 6 5 9 9 N 1.34784 * 120.00211 * 359.68506 * 7 6 5 10 10 C 1.46494 * 119.99882 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47494 * 325.00249 * 10 9 7 12 12 C 1.52996 * 109.47185 * 85.00249 * 10 9 7 13 13 C 1.53005 * 109.46878 * 205.00246 * 10 9 7 14 14 C 1.52997 * 109.47341 * 65.00097 * 13 10 9 15 15 H 1.09000 * 109.47140 * 305.00268 * 14 13 10 16 16 C 1.52993 * 109.47024 * 185.00159 * 14 13 10 17 17 N 1.46906 * 109.46907 * 65.00038 * 14 13 10 18 18 C 1.46900 * 110.99927 * 205.00040 * 17 14 13 19 19 C 1.50697 * 109.47124 * 179.97438 * 18 17 14 20 20 O 1.21291 * 119.99948 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99888 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99681 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00143 * 359.97438 * 22 21 19 24 24 C 1.38944 * 119.99633 * 180.02562 * 22 21 19 25 25 N 1.31420 * 120.00262 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 120.00078 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46703 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.46910 * 119.99783 * 26 24 22 29 29 H 1.48498 * 109.47246 * 240.00165 * 26 24 22 30 30 H 1.08997 * 109.47421 * 270.02876 * 1 2 3 31 31 H 1.08995 * 109.47047 * 30.03260 * 1 2 3 32 32 H 1.09001 * 109.46953 * 150.02650 * 1 2 3 33 33 H 1.07998 * 125.43618 * 359.97353 * 3 2 1 34 34 H 1.07999 * 125.80436 * 180.29233 * 5 4 3 35 35 H 0.96999 * 119.99696 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.47354 * 59.99920 * 12 10 9 37 37 H 1.08999 * 109.47287 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.47313 * 299.99981 * 12 10 9 39 39 H 1.09001 * 109.46827 * 304.99960 * 13 10 9 40 40 H 1.08994 * 109.46957 * 185.00526 * 13 10 9 41 41 H 1.08992 * 109.47715 * 60.00117 * 16 14 13 42 42 H 1.09004 * 109.46862 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46998 * 299.99586 * 16 14 13 44 44 H 1.00902 * 110.99915 * 328.95567 * 17 14 13 45 45 H 1.08997 * 109.47355 * 300.00567 * 18 17 14 46 46 H 1.09003 * 109.47178 * 60.00051 * 18 17 14 47 47 H 0.96997 * 120.00122 * 359.97438 * 21 19 18 48 48 H 0.97001 * 119.99631 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6589 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 2.3923 -1.1738 0.0007 7 6 1.9915 -2.5920 0.0010 8 8 0.8125 -2.8907 0.0006 9 7 2.9314 -3.5580 0.0016 10 6 2.5328 -4.9677 0.0025 11 1 1.6238 -5.0880 0.5919 12 6 2.2732 -5.4252 -1.4342 13 6 3.6521 -5.8137 0.6128 14 6 3.8270 -5.4417 2.0865 15 1 3.9971 -4.3685 2.1726 16 6 5.0262 -6.1961 2.6640 17 7 2.6142 -5.8065 2.8308 18 6 2.4703 -4.9831 4.0388 19 6 1.2177 -5.3847 4.7742 20 8 0.5144 -6.2701 4.3355 21 7 0.8796 -4.7606 5.9200 22 6 -0.2597 -5.1264 6.5893 23 1 -0.8863 -5.9142 6.1982 24 6 -0.6085 -4.4827 7.7702 25 7 0.1538 -3.5237 8.2459 26 14 -2.1612 -4.9805 8.6819 27 1 -2.8388 -6.0764 7.9435 28 1 -1.8059 -5.4478 10.0459 29 1 -3.0732 -3.8128 8.7804 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 1.9894 2.1010 -0.0004 34 1 4.5702 -1.2608 0.0133 35 1 3.8716 -3.3198 0.0023 36 1 3.1821 -5.3049 -2.0237 37 1 1.9771 -6.4742 -1.4337 38 1 1.4758 -4.8224 -1.8690 39 1 4.5828 -5.6255 0.0775 40 1 3.3942 -6.8697 0.5327 41 1 5.9260 -5.9255 2.1118 42 1 5.1505 -5.9314 3.7141 43 1 4.8560 -7.2693 2.5780 44 1 1.7955 -5.7357 2.2453 45 1 3.3351 -5.1319 4.6852 46 1 2.4043 -3.9323 3.7565 47 1 1.4426 -4.0533 6.2715 48 1 -0.0896 -3.0747 9.0705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135203536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:44 Heat of formation + Delta-G solvation = -97.077127 kcal Electronic energy + Delta-G solvation = -29597.124734 eV Core-core repulsion = 25459.149942 eV Total energy + Delta-G solvation = -4137.974793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.51291 -40.86811 -40.18296 -38.51707 -36.26688 -35.81948 -34.80896 -33.39235 -33.09491 -31.87460 -30.68000 -28.21720 -28.19030 -27.59176 -25.73554 -24.96543 -22.54964 -21.52927 -21.31539 -21.09247 -21.00510 -19.95833 -19.04428 -17.90558 -17.41175 -17.17331 -16.98709 -16.79835 -16.54714 -16.19950 -15.89447 -15.69707 -15.56008 -15.39366 -14.70405 -14.57959 -14.36665 -14.27589 -14.08356 -13.88534 -13.60061 -13.48945 -13.46078 -13.31394 -13.16840 -12.91744 -12.83088 -12.67470 -12.48648 -12.44615 -12.21992 -12.12785 -11.89979 -11.54872 -11.48985 -11.06778 -10.61792 -10.38752 -10.12584 -10.05001 -9.62566 -9.32843 -8.49909 -5.98998 0.36574 1.05708 1.33916 1.38695 1.53676 1.99676 2.00456 2.16895 2.26975 2.32069 2.92324 3.16607 3.47403 3.58372 3.63243 3.68819 3.88102 4.08521 4.13197 4.24151 4.32440 4.38826 4.40750 4.47291 4.49661 4.53452 4.63464 4.72143 4.75773 4.82052 4.90099 4.95956 5.00452 5.02540 5.04656 5.09396 5.22701 5.26577 5.37622 5.44641 5.49615 5.50700 5.89452 5.98458 6.12630 6.38582 6.54423 6.56275 7.08937 7.23712 7.51245 8.06990 8.67960 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008838 B = 0.003236 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.320338 B = 8650.344082 C =10449.751324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.171 4.171 3 C -0.031 4.031 4 O -0.172 6.172 5 C 0.050 3.950 6 C -0.273 4.273 7 C 0.579 3.421 8 O -0.582 6.582 9 N -0.704 5.704 10 C 0.137 3.863 11 H 0.049 0.951 12 C -0.154 4.154 13 C -0.116 4.116 14 C 0.078 3.922 15 H 0.050 0.950 16 C -0.136 4.136 17 N -0.676 5.676 18 C 0.070 3.930 19 C 0.435 3.565 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.275 1.275 28 H -0.267 1.267 29 H -0.270 1.270 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.241 0.759 34 H 0.255 0.745 35 H 0.414 0.586 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.053 0.947 44 H 0.337 0.663 45 H 0.105 0.895 46 H 0.049 0.951 47 H 0.395 0.605 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.849 8.472 -19.998 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.173 4.173 3 C -0.097 4.097 4 O -0.066 6.066 5 C -0.021 4.021 6 C -0.277 4.277 7 C 0.368 3.632 8 O -0.463 6.463 9 N -0.357 5.357 10 C 0.032 3.968 11 H 0.067 0.933 12 C -0.212 4.212 13 C -0.153 4.153 14 C -0.031 4.031 15 H 0.068 0.932 16 C -0.194 4.194 17 N -0.311 5.311 18 C -0.062 4.062 19 C 0.222 3.778 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.192 1.192 29 H -0.195 1.195 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.258 0.742 34 H 0.271 0.729 35 H 0.252 0.748 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.157 0.843 45 H 0.123 0.877 46 H 0.067 0.933 47 H 0.229 0.771 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.080 7.447 -19.793 25.974 hybrid contribution -1.128 0.863 0.632 1.554 sum 13.953 8.310 -19.161 25.117 Atomic orbital electron populations 1.20150 0.89138 1.02940 1.01865 1.21685 0.97525 0.91693 1.06421 1.24262 0.78970 1.00496 1.05950 1.83823 1.29678 1.22590 1.70522 1.25110 0.98799 0.81015 0.97159 1.21507 0.95193 0.93463 1.17555 1.17674 0.85312 0.84982 0.75227 1.90788 1.19659 1.84032 1.51786 1.45749 1.09634 1.05375 1.74908 1.21016 0.98291 0.79972 0.97506 0.93282 1.22078 1.02336 1.01661 0.95108 1.22060 0.99230 1.00564 0.93491 1.21744 0.90183 0.98182 0.92947 0.93165 1.21793 0.96484 1.00553 1.00570 1.60296 1.06364 1.56610 1.07802 1.21499 0.95654 0.95227 0.93862 1.20929 0.89185 0.84692 0.82965 1.90482 1.56213 1.34972 1.69264 1.41929 1.23399 1.34368 1.21276 1.19706 1.01982 1.19342 1.05478 0.90521 1.26059 1.02209 0.95641 0.97268 1.69683 1.39600 1.24102 1.22711 0.84866 0.77229 0.78255 0.77947 1.19919 1.19162 1.19519 0.92515 0.89063 0.92879 0.74249 0.72885 0.74804 0.89756 0.90752 0.94644 0.86516 0.89217 0.89393 0.93904 0.92784 0.84266 0.87714 0.93307 0.77092 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 10.00 71.23 0.71 -1.34 16 2 C -0.17 -3.94 6.37 -18.49 -0.12 -4.05 16 3 C -0.03 -0.50 11.96 66.89 0.80 0.30 16 4 O -0.17 -2.59 10.52 4.41 0.05 -2.55 16 5 C 0.05 0.67 11.61 67.39 0.78 1.45 16 6 C -0.27 -6.15 6.31 -18.99 -0.12 -6.27 16 7 C 0.58 15.82 7.78 86.65 0.67 16.49 16 8 O -0.58 -22.16 15.07 -4.08 -0.06 -22.22 16 9 N -0.70 -13.05 4.44 -445.85 -1.98 -15.03 16 10 C 0.14 2.86 2.48 44.99 0.11 2.97 16 11 H 0.05 1.52 5.72 -2.39 -0.01 1.50 16 12 C -0.15 -2.81 9.48 71.98 0.68 -2.13 16 13 C -0.12 -1.82 4.34 30.60 0.13 -1.68 16 14 C 0.08 1.66 2.59 44.91 0.12 1.78 16 15 H 0.05 0.99 7.28 -2.39 -0.02 0.97 16 16 C -0.14 -2.51 9.41 71.98 0.68 -1.83 16 17 N -0.68 -22.45 5.93 -495.59 -2.94 -25.39 16 18 C 0.07 2.64 5.97 85.56 0.51 3.15 16 19 C 0.43 22.41 7.82 87.66 0.69 23.10 16 20 O -0.62 -37.10 15.78 -3.06 -0.05 -37.15 16 21 N -0.57 -31.36 5.29 -306.99 -1.62 -32.98 16 22 C -0.34 -20.10 9.68 84.04 0.81 -19.29 16 23 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 24 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 25 N -0.92 -51.34 13.05 21.66 0.28 -51.06 16 26 Si 0.99 44.66 29.55 68.60 2.03 46.69 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.58 6.91 -2.39 -0.02 1.56 16 33 H 0.24 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.26 0.62 7.47 -2.91 -0.02 0.60 16 35 H 0.41 4.01 7.57 -92.71 -0.70 3.31 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.04 0.90 7.45 -2.38 -0.02 0.88 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.34 12.65 6.11 -89.69 -0.55 12.10 16 45 H 0.10 3.51 7.44 -2.39 -0.02 3.49 16 46 H 0.05 1.75 8.06 -2.39 -0.02 1.73 16 47 H 0.40 20.55 7.90 -92.71 -0.73 19.82 16 48 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -85.27 400.99 1.66 -83.61 By element: Atomic # 1 Polarization: 44.60 SS G_CDS: -0.98 Total: 43.62 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 6.93 Total: 12.45 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -6.26 Total: -124.46 kcal Atomic # 8 Polarization: -61.85 SS G_CDS: -0.06 Total: -61.91 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -85.27 1.66 -83.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135203536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.468 kcal (2) G-P(sol) polarization free energy of solvation -85.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds