Wall clock time and date at job start Tue Mar 31 2020 20:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34172 * 127.02872 * 2 1 4 4 O 1.34216 * 109.12759 * 179.97438 * 3 2 1 5 5 C 1.33658 * 110.90395 * 359.76581 * 4 3 2 6 6 C 1.36414 * 108.39746 * 0.38486 * 5 4 3 7 7 C 1.47382 * 127.19139 * 179.89120 * 6 5 4 8 8 O 1.21610 * 120.00286 * 179.68400 * 7 6 5 9 9 N 1.34784 * 119.99879 * 359.68727 * 7 6 5 10 10 C 1.46494 * 119.99635 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47706 * 34.99696 * 10 9 7 12 12 C 1.53005 * 109.47118 * 274.99773 * 10 9 7 13 13 C 1.53004 * 109.46982 * 155.00372 * 10 9 7 14 14 C 1.52999 * 109.46735 * 294.99676 * 13 10 9 15 15 H 1.09000 * 109.47392 * 55.00029 * 14 13 10 16 16 C 1.53000 * 109.46976 * 175.00006 * 14 13 10 17 17 N 1.46901 * 109.47434 * 295.00094 * 14 13 10 18 18 C 1.46895 * 111.00414 * 154.99924 * 17 14 13 19 19 C 1.50697 * 109.47671 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99477 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00679 * 180.02562 * 19 18 17 22 22 C 1.37088 * 120.00332 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00090 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99956 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00008 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99975 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47220 * 59.99626 * 26 24 22 28 28 H 1.48500 * 109.47185 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99906 * 26 24 22 30 30 H 1.09005 * 109.46990 * 270.02404 * 1 2 3 31 31 H 1.09003 * 109.46536 * 30.01588 * 1 2 3 32 32 H 1.08991 * 109.47701 * 150.02092 * 1 2 3 33 33 H 1.07996 * 125.43806 * 359.97438 * 3 2 1 34 34 H 1.08001 * 125.80045 * 180.26789 * 5 4 3 35 35 H 0.96995 * 120.00015 * 359.72334 * 9 7 6 36 36 H 1.08996 * 109.47503 * 300.00392 * 12 10 9 37 37 H 1.08997 * 109.47041 * 60.00616 * 12 10 9 38 38 H 1.09005 * 109.46855 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.47373 * 54.99720 * 13 10 9 40 40 H 1.09001 * 109.47302 * 175.00215 * 13 10 9 41 41 H 1.08995 * 109.47298 * 299.99740 * 16 14 13 42 42 H 1.09000 * 109.47262 * 60.00313 * 16 14 13 43 43 H 1.09001 * 109.47295 * 179.97438 * 16 14 13 44 44 H 1.00900 * 110.99728 * 31.04557 * 17 14 13 45 45 H 1.08996 * 109.47129 * 300.00618 * 18 17 14 46 46 H 1.09004 * 109.47122 * 60.00212 * 18 17 14 47 47 H 0.97001 * 119.99525 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00007 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0711 0.0000 4 8 3.5922 0.6586 0.0006 5 6 3.6622 -0.6761 0.0061 6 6 2.3921 -1.1739 0.0006 7 6 1.9911 -2.5921 0.0014 8 8 0.8122 -2.8907 0.0018 9 7 2.9309 -3.5582 0.0018 10 6 2.5323 -4.9679 0.0032 11 1 1.6231 -5.0890 -0.5856 12 6 2.2732 -5.4232 1.4408 13 6 3.6513 -5.8149 -0.6061 14 6 3.8256 -5.4451 -2.0805 15 1 3.9958 -4.3720 -2.1682 16 6 5.0245 -6.2005 -2.6574 17 7 2.6125 -5.8108 -2.8239 18 6 2.4682 -4.9892 -4.0330 19 6 1.2160 -5.3926 -4.7680 20 8 0.5132 -6.2779 -4.3282 21 7 0.8776 -4.7704 -5.9147 22 6 -0.2618 -5.1371 -6.5831 23 1 -0.8881 -5.9248 -6.1910 24 6 -0.6104 -4.4960 -7.7655 25 7 0.1519 -3.5379 -8.2429 26 14 -2.1633 -4.9951 -8.6759 27 1 -3.3412 -4.7891 -7.7954 28 1 -2.3088 -4.1650 -9.8986 29 1 -2.0749 -6.4276 -9.0571 30 1 -0.3633 0.0004 1.0277 31 1 -0.3632 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5134 33 1 1.9897 2.1009 -0.0004 34 1 4.5700 -1.2611 0.0118 35 1 3.8712 -3.3201 -0.0025 36 1 3.1823 -5.3021 2.0297 37 1 1.4760 -4.8198 1.8749 38 1 1.9770 -6.4722 1.4418 39 1 4.5822 -5.6260 -0.0716 40 1 3.3932 -6.8708 -0.5245 41 1 5.9246 -5.9291 -2.1059 42 1 4.8543 -7.2736 -2.5697 43 1 5.1485 -5.9374 -3.7079 44 1 1.7941 -5.7391 -2.2381 45 1 2.4025 -3.9380 -3.7522 46 1 3.3328 -5.1392 -4.6796 47 1 1.4403 -4.0632 -6.2670 48 1 -0.0917 -3.0900 -9.0682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135203537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:50 Heat of formation + Delta-G solvation = -68.802603 kcal Electronic energy + Delta-G solvation = -29594.551544 eV Core-core repulsion = 25457.802827 eV Total energy + Delta-G solvation = -4136.748717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79380 -39.88314 -38.38224 -37.28526 -35.03511 -33.99836 -33.82744 -32.20639 -31.21625 -30.73548 -29.87256 -27.38728 -27.08175 -26.13522 -24.20826 -23.82565 -21.71741 -20.73415 -20.36015 -20.10589 -19.20496 -18.27651 -17.82875 -16.48764 -16.39757 -16.29569 -16.00299 -15.36476 -15.10324 -15.06494 -14.72385 -14.40584 -13.91402 -13.83633 -13.72040 -13.57712 -13.40755 -13.16252 -12.94774 -12.67262 -12.62647 -12.43346 -12.23676 -12.08498 -11.82376 -11.73392 -11.66565 -11.48405 -11.20674 -11.03150 -10.91028 -10.56935 -10.39761 -10.15673 -10.03000 -9.75495 -9.44169 -9.23687 -8.92141 -8.37543 -8.00891 -7.89696 -6.35992 -3.76423 1.11041 1.83334 2.66226 2.96772 3.24551 3.24654 3.29372 3.34433 3.97639 4.14602 4.24723 4.36214 4.39644 4.49486 4.71632 4.81595 4.99048 5.07057 5.15198 5.20776 5.26109 5.30724 5.39382 5.39997 5.52636 5.59051 5.62022 5.64502 5.74585 5.76946 5.78611 5.85472 5.86318 5.95841 6.02971 6.05871 6.09622 6.28965 6.31919 6.37092 6.39608 6.70557 7.30123 7.33865 7.60546 7.72580 8.12181 8.12564 8.67651 9.23774 9.60528 10.12479 10.81881 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008843 B = 0.003234 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.746353 B = 8655.888997 C =10455.142565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.129 4.129 3 C -0.048 4.048 4 O -0.172 6.172 5 C 0.018 3.982 6 C -0.230 4.230 7 C 0.585 3.415 8 O -0.523 6.523 9 N -0.723 5.723 10 C 0.136 3.864 11 H 0.094 0.906 12 C -0.160 4.160 13 C -0.129 4.129 14 C 0.081 3.919 15 H 0.041 0.959 16 C -0.140 4.140 17 N -0.662 5.662 18 C 0.053 3.947 19 C 0.442 3.558 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.208 0.792 34 H 0.209 0.791 35 H 0.394 0.606 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.349 0.651 45 H 0.040 0.960 46 H 0.084 0.916 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.688 7.397 19.428 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C -0.114 4.114 4 O -0.067 6.067 5 C -0.053 4.053 6 C -0.235 4.235 7 C 0.372 3.628 8 O -0.400 6.400 9 N -0.375 5.375 10 C 0.032 3.968 11 H 0.112 0.888 12 C -0.219 4.219 13 C -0.167 4.167 14 C -0.029 4.029 15 H 0.058 0.942 16 C -0.198 4.198 17 N -0.298 5.298 18 C -0.080 4.080 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.224 0.776 34 H 0.225 0.775 35 H 0.228 0.772 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.170 0.830 45 H 0.057 0.943 46 H 0.102 0.898 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.832 6.359 19.215 23.444 hybrid contribution -0.213 1.184 -0.472 1.292 sum 11.619 7.542 18.743 23.306 Atomic orbital electron populations 1.20265 0.88194 1.03657 1.02481 1.21461 0.97427 0.90322 1.03857 1.23729 0.79564 0.99768 1.08328 1.83773 1.29753 1.22240 1.70961 1.24352 0.98638 0.81301 1.00990 1.21465 0.93408 0.94374 1.14261 1.17278 0.85695 0.83706 0.76091 1.90815 1.17195 1.83116 1.48847 1.45941 1.09068 1.06200 1.76317 1.21107 0.99205 0.79236 0.97279 0.88791 1.22144 1.01911 1.01972 0.95841 1.22113 0.98214 1.01255 0.95102 1.21538 0.92077 0.97337 0.91920 0.94156 1.21797 0.95756 1.01353 1.00869 1.60223 1.04954 1.56650 1.07924 1.21681 0.98603 0.94608 0.93121 1.19810 0.87906 0.85943 0.83602 1.90519 1.54399 1.33266 1.68410 1.41840 1.23665 1.34013 1.20569 1.19658 1.00648 1.18613 1.03860 0.88001 1.25245 0.99323 0.96111 0.97235 1.69608 1.38562 1.24012 1.22303 0.85926 0.81395 0.78503 0.78450 1.19913 1.21001 1.19896 0.91247 0.91584 0.89649 0.77578 0.77471 0.77177 0.92605 0.92041 0.91236 0.90762 0.88984 0.93033 0.91833 0.92588 0.82957 0.94253 0.89775 0.77548 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.00 36.01 0.36 -0.65 16 2 C -0.13 -1.48 6.37 -102.50 -0.65 -2.13 16 3 C -0.05 -0.43 11.96 29.30 0.35 -0.08 16 4 O -0.17 -1.58 10.52 7.64 0.08 -1.50 16 5 C 0.02 0.15 11.61 30.07 0.35 0.50 16 6 C -0.23 -2.66 6.31 -103.27 -0.65 -3.31 16 7 C 0.58 7.77 7.78 -12.54 -0.10 7.67 16 8 O -0.52 -9.12 15.07 5.27 0.08 -9.04 16 9 N -0.72 -7.15 4.44 -54.89 -0.24 -7.39 16 10 C 0.14 1.45 2.48 -67.93 -0.17 1.29 16 11 H 0.09 1.35 5.72 -51.93 -0.30 1.06 16 12 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 13 C -0.13 -1.18 4.34 -26.73 -0.12 -1.30 16 14 C 0.08 0.95 2.59 -67.71 -0.18 0.78 16 15 H 0.04 0.46 7.28 -51.93 -0.38 0.08 16 16 C -0.14 -1.50 9.41 37.16 0.35 -1.15 16 17 N -0.66 -10.97 5.93 -108.00 -0.64 -11.61 16 18 C 0.05 0.99 5.96 -4.98 -0.03 0.96 16 19 C 0.44 10.98 7.82 -10.99 -0.09 10.90 16 20 O -0.58 -16.50 15.78 5.55 0.09 -16.41 16 21 N -0.56 -14.94 5.29 -10.97 -0.06 -15.00 16 22 C -0.30 -8.62 9.68 -14.94 -0.14 -8.77 16 23 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -25.24 13.05 55.50 0.72 -24.51 16 26 Si 0.93 21.68 29.55 -169.99 -5.02 16.66 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.21 6.91 -51.93 -0.36 0.85 16 33 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.21 0.80 7.47 -52.49 -0.39 0.41 16 35 H 0.39 2.60 7.57 -40.82 -0.31 2.29 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 44 H 0.35 6.25 6.12 -39.29 -0.24 6.01 16 45 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 46 H 0.08 1.45 7.44 -51.93 -0.39 1.07 16 47 H 0.39 9.93 7.90 -40.82 -0.32 9.60 16 48 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -36.06 400.99 -6.64 -42.70 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -7.23 Total: 16.02 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.46 Total: 4.04 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.22 Total: -58.51 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.25 Total: -26.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.06 -6.64 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135203537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.107 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds