Wall clock time and date at job start Tue Mar 31 2020 20:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34172 * 127.02872 * 2 1 4 4 O 1.34216 * 109.12759 * 179.97438 * 3 2 1 5 5 C 1.33658 * 110.90395 * 359.76581 * 4 3 2 6 6 C 1.36414 * 108.39746 * 0.38486 * 5 4 3 7 7 C 1.47382 * 127.19139 * 179.89120 * 6 5 4 8 8 O 1.21610 * 120.00286 * 179.68400 * 7 6 5 9 9 N 1.34784 * 119.99879 * 359.68727 * 7 6 5 10 10 C 1.46494 * 119.99635 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47706 * 34.99696 * 10 9 7 12 12 C 1.53005 * 109.47118 * 274.99773 * 10 9 7 13 13 C 1.53004 * 109.46982 * 155.00372 * 10 9 7 14 14 C 1.52999 * 109.46735 * 294.99676 * 13 10 9 15 15 H 1.09000 * 109.47392 * 55.00029 * 14 13 10 16 16 C 1.53000 * 109.46976 * 175.00006 * 14 13 10 17 17 N 1.46901 * 109.47434 * 295.00094 * 14 13 10 18 18 C 1.46895 * 111.00414 * 154.99924 * 17 14 13 19 19 C 1.50697 * 109.47671 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99477 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00679 * 180.02562 * 19 18 17 22 22 C 1.37088 * 120.00332 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00090 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99956 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00008 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99975 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47220 * 59.99626 * 26 24 22 28 28 H 1.48500 * 109.47185 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99906 * 26 24 22 30 30 H 1.09005 * 109.46990 * 270.02404 * 1 2 3 31 31 H 1.09003 * 109.46536 * 30.01588 * 1 2 3 32 32 H 1.08991 * 109.47701 * 150.02092 * 1 2 3 33 33 H 1.07996 * 125.43806 * 359.97438 * 3 2 1 34 34 H 1.08001 * 125.80045 * 180.26789 * 5 4 3 35 35 H 0.96995 * 120.00015 * 359.72334 * 9 7 6 36 36 H 1.08996 * 109.47503 * 300.00392 * 12 10 9 37 37 H 1.08997 * 109.47041 * 60.00616 * 12 10 9 38 38 H 1.09005 * 109.46855 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.47373 * 54.99720 * 13 10 9 40 40 H 1.09001 * 109.47302 * 175.00215 * 13 10 9 41 41 H 1.08995 * 109.47298 * 299.99740 * 16 14 13 42 42 H 1.09000 * 109.47262 * 60.00313 * 16 14 13 43 43 H 1.09001 * 109.47295 * 179.97438 * 16 14 13 44 44 H 1.00900 * 110.99728 * 31.04557 * 17 14 13 45 45 H 1.08996 * 109.47129 * 300.00618 * 18 17 14 46 46 H 1.09004 * 109.47122 * 60.00212 * 18 17 14 47 47 H 0.97001 * 119.99525 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00007 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0711 0.0000 4 8 3.5922 0.6586 0.0006 5 6 3.6622 -0.6761 0.0061 6 6 2.3921 -1.1739 0.0006 7 6 1.9911 -2.5921 0.0014 8 8 0.8122 -2.8907 0.0018 9 7 2.9309 -3.5582 0.0018 10 6 2.5323 -4.9679 0.0032 11 1 1.6231 -5.0890 -0.5856 12 6 2.2732 -5.4232 1.4408 13 6 3.6513 -5.8149 -0.6061 14 6 3.8256 -5.4451 -2.0805 15 1 3.9958 -4.3720 -2.1682 16 6 5.0245 -6.2005 -2.6574 17 7 2.6125 -5.8108 -2.8239 18 6 2.4682 -4.9892 -4.0330 19 6 1.2160 -5.3926 -4.7680 20 8 0.5132 -6.2779 -4.3282 21 7 0.8776 -4.7704 -5.9147 22 6 -0.2618 -5.1371 -6.5831 23 1 -0.8881 -5.9248 -6.1910 24 6 -0.6104 -4.4960 -7.7655 25 7 0.1519 -3.5379 -8.2429 26 14 -2.1633 -4.9951 -8.6759 27 1 -3.3412 -4.7891 -7.7954 28 1 -2.3088 -4.1650 -9.8986 29 1 -2.0749 -6.4276 -9.0571 30 1 -0.3633 0.0004 1.0277 31 1 -0.3632 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5134 33 1 1.9897 2.1009 -0.0004 34 1 4.5700 -1.2611 0.0118 35 1 3.8712 -3.3201 -0.0025 36 1 3.1823 -5.3021 2.0297 37 1 1.4760 -4.8198 1.8749 38 1 1.9770 -6.4722 1.4418 39 1 4.5822 -5.6260 -0.0716 40 1 3.3932 -6.8708 -0.5245 41 1 5.9246 -5.9291 -2.1059 42 1 4.8543 -7.2736 -2.5697 43 1 5.1485 -5.9374 -3.7079 44 1 1.7941 -5.7391 -2.2381 45 1 2.4025 -3.9380 -3.7522 46 1 3.3328 -5.1392 -4.6796 47 1 1.4403 -4.0632 -6.2670 48 1 -0.0917 -3.0900 -9.0682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135203537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:49 Heat of formation + Delta-G solvation = -96.897380 kcal Electronic energy + Delta-G solvation = -29595.769825 eV Core-core repulsion = 25457.802827 eV Total energy + Delta-G solvation = -4137.966998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.51291 -40.86812 -40.18060 -38.51717 -36.26600 -35.81743 -34.80886 -33.39155 -33.09449 -31.87385 -30.67992 -28.21605 -28.18956 -27.59042 -25.73242 -24.96418 -22.54962 -21.52930 -21.31379 -21.09026 -21.00463 -19.95579 -19.04356 -17.90262 -17.41259 -17.17087 -16.98503 -16.79765 -16.54013 -16.20654 -15.89476 -15.69893 -15.56461 -15.38837 -14.71344 -14.56980 -14.35086 -14.29697 -14.05332 -13.88970 -13.59112 -13.48412 -13.45667 -13.31375 -13.17602 -12.91220 -12.83063 -12.67329 -12.49632 -12.46823 -12.21989 -12.12685 -11.90006 -11.53792 -11.48955 -11.06818 -10.61927 -10.38511 -10.12207 -10.05168 -9.62446 -9.32852 -8.49406 -5.98642 0.36679 1.05869 1.37348 1.38666 1.50263 1.99757 2.00885 2.16892 2.27148 2.32254 2.92415 3.17041 3.47508 3.58416 3.63182 3.68809 3.88050 4.08596 4.13202 4.24254 4.32129 4.38860 4.40781 4.47054 4.49636 4.53501 4.63434 4.72715 4.75749 4.82007 4.90199 4.96028 5.00582 5.02533 5.04617 5.09427 5.22670 5.26601 5.37252 5.44728 5.49603 5.50788 5.89366 5.98535 6.12605 6.38590 6.54496 6.56540 7.08909 7.23802 7.51398 8.07221 8.67995 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008843 B = 0.003234 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.746353 B = 8655.888997 C =10455.142565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.171 4.171 3 C -0.032 4.032 4 O -0.172 6.172 5 C 0.050 3.950 6 C -0.273 4.273 7 C 0.579 3.421 8 O -0.582 6.582 9 N -0.704 5.704 10 C 0.137 3.863 11 H 0.049 0.951 12 C -0.153 4.153 13 C -0.116 4.116 14 C 0.078 3.922 15 H 0.050 0.950 16 C -0.136 4.136 17 N -0.676 5.676 18 C 0.070 3.930 19 C 0.434 3.566 20 O -0.623 6.623 21 N -0.572 5.572 22 C -0.338 4.338 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.274 1.274 28 H -0.267 1.267 29 H -0.270 1.270 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.241 0.759 34 H 0.255 0.745 35 H 0.414 0.586 36 H 0.084 0.916 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.337 0.663 45 H 0.049 0.951 46 H 0.105 0.895 47 H 0.395 0.605 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.833 8.513 19.956 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.173 4.173 3 C -0.097 4.097 4 O -0.066 6.066 5 C -0.021 4.021 6 C -0.277 4.277 7 C 0.368 3.632 8 O -0.462 6.462 9 N -0.357 5.357 10 C 0.032 3.968 11 H 0.067 0.933 12 C -0.212 4.212 13 C -0.153 4.153 14 C -0.031 4.031 15 H 0.068 0.932 16 C -0.194 4.194 17 N -0.311 5.311 18 C -0.062 4.062 19 C 0.222 3.778 20 O -0.510 6.510 21 N -0.209 5.209 22 C -0.467 4.467 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.191 1.191 29 H -0.195 1.195 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.257 0.743 34 H 0.271 0.729 35 H 0.252 0.748 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.157 0.843 45 H 0.067 0.933 46 H 0.123 0.877 47 H 0.229 0.771 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.068 7.494 19.744 25.942 hybrid contribution -1.132 0.849 -0.599 1.537 sum 13.935 8.343 19.145 25.106 Atomic orbital electron populations 1.20150 0.89133 1.02497 1.02309 1.21683 0.97530 0.91690 1.06408 1.24255 0.78969 1.00491 1.05978 1.83824 1.29678 1.22587 1.70527 1.25109 0.98793 0.81017 0.97165 1.21507 0.95193 0.93460 1.17557 1.17677 0.85311 0.84985 0.75229 1.90787 1.19658 1.84033 1.51771 1.45749 1.09633 1.05374 1.74916 1.21016 0.98285 0.79976 0.97509 0.93294 1.22077 1.02337 1.01663 0.95093 1.22062 0.99237 1.00565 0.93482 1.21745 0.90182 0.98170 0.92962 0.93177 1.21793 0.96488 1.00549 1.00569 1.60292 1.06358 1.56674 1.07746 1.21496 0.95665 0.95229 0.93846 1.20924 0.89190 0.84731 0.82973 1.90481 1.56236 1.34984 1.69254 1.41912 1.23378 1.34392 1.21218 1.19641 1.02076 1.19538 1.05481 0.90491 1.26056 1.02197 0.95637 0.97226 1.69667 1.39645 1.24087 1.22640 0.84988 0.77326 0.78485 0.77522 1.19906 1.19091 1.19505 0.91065 0.89721 0.93655 0.74262 0.72883 0.74807 0.89752 0.94648 0.90753 0.86510 0.89212 0.89391 0.92782 0.93909 0.84268 0.93310 0.87734 0.77094 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 10.00 71.24 0.71 -1.33 16 2 C -0.17 -3.93 6.37 -18.49 -0.12 -4.05 16 3 C -0.03 -0.50 11.96 66.89 0.80 0.30 16 4 O -0.17 -2.59 10.52 4.41 0.05 -2.55 16 5 C 0.05 0.67 11.61 67.39 0.78 1.45 16 6 C -0.27 -6.15 6.31 -18.99 -0.12 -6.27 16 7 C 0.58 15.83 7.78 86.65 0.67 16.51 16 8 O -0.58 -22.18 15.07 -4.06 -0.06 -22.24 16 9 N -0.70 -13.07 4.44 -445.83 -1.98 -15.05 16 10 C 0.14 2.87 2.48 45.00 0.11 2.98 16 11 H 0.05 1.52 5.72 -2.39 -0.01 1.50 16 12 C -0.15 -2.81 9.48 71.98 0.68 -2.13 16 13 C -0.12 -1.82 4.34 30.60 0.13 -1.69 16 14 C 0.08 1.66 2.59 44.91 0.12 1.78 16 15 H 0.05 0.99 7.28 -2.39 -0.02 0.97 16 16 C -0.14 -2.51 9.41 71.98 0.68 -1.83 16 17 N -0.68 -22.47 5.93 -495.59 -2.94 -25.41 16 18 C 0.07 2.65 5.96 85.56 0.51 3.16 16 19 C 0.43 22.40 7.82 87.66 0.69 23.08 16 20 O -0.62 -37.10 15.78 -3.07 -0.05 -37.15 16 21 N -0.57 -31.34 5.29 -306.99 -1.62 -32.96 16 22 C -0.34 -20.24 9.68 84.04 0.81 -19.42 16 23 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 25 N -0.92 -51.33 13.05 21.66 0.28 -51.05 16 26 Si 0.99 44.62 29.55 68.60 2.03 46.65 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 29 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.45 6.91 -2.39 -0.02 1.43 16 33 H 0.24 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.26 0.61 7.47 -2.91 -0.02 0.59 16 35 H 0.41 4.02 7.57 -92.71 -0.70 3.32 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.04 0.90 7.45 -2.39 -0.02 0.89 16 44 H 0.34 12.66 6.12 -89.69 -0.55 12.11 16 45 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 46 H 0.10 3.51 7.44 -2.39 -0.02 3.49 16 47 H 0.40 20.56 7.90 -92.71 -0.73 19.83 16 48 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -85.15 400.99 1.66 -83.49 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -0.98 Total: 43.89 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.93 Total: 12.37 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -6.26 Total: -124.47 kcal Atomic # 8 Polarization: -61.87 SS G_CDS: -0.06 Total: -61.93 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -85.15 1.66 -83.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135203537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.405 kcal (2) G-P(sol) polarization free energy of solvation -85.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds