Wall clock time and date at job start Tue Mar 31 2020 20:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00356 * 2 1 4 4 C 1.53001 * 109.46856 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46666 * 184.39247 * 4 3 2 6 6 N 1.46503 * 109.46225 * 303.06100 * 5 4 3 7 7 C 1.34776 * 119.99729 * 303.01430 * 6 5 4 8 8 O 1.21688 * 119.99978 * 355.01756 * 7 6 5 9 9 C 1.46726 * 119.99978 * 175.02759 * 7 6 5 10 10 O 1.35344 * 126.64353 * 0.23865 * 9 7 6 11 11 C 1.33664 * 107.68330 * 180.17355 * 10 9 7 12 12 N 1.30611 * 109.15525 * 359.61289 * 11 10 9 13 13 C 1.33690 * 108.99576 * 0.23927 * 12 11 10 14 14 C 1.50702 * 126.27330 * 180.02562 * 13 12 11 15 15 C 1.53042 * 109.44963 * 63.02548 * 5 4 3 16 16 C 1.53187 * 109.31230 * 181.37659 * 15 5 4 17 17 N 1.46928 * 108.77810 * 305.36888 * 16 15 5 18 18 C 1.36943 * 120.62856 * 233.62882 * 17 16 15 19 19 H 1.08004 * 119.99694 * 31.76095 * 18 17 16 20 20 C 1.38805 * 120.00135 * 211.76046 * 18 17 16 21 21 N 1.31624 * 119.99656 * 10.84269 * 20 18 17 22 22 Si 1.86799 * 120.00211 * 190.84689 * 20 18 17 23 23 H 1.48504 * 109.47148 * 59.99861 * 22 20 18 24 24 H 1.48502 * 109.47333 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46941 * 299.99755 * 22 20 18 26 26 C 1.46921 * 118.74164 * 53.60467 * 17 16 15 27 27 C 1.53043 * 109.45862 * 183.08780 * 5 4 3 28 28 H 1.08993 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46646 * 299.99696 * 1 2 3 30 30 H 1.08995 * 109.46959 * 59.99699 * 1 2 3 31 31 H 1.08998 * 109.47020 * 60.00168 * 3 2 1 32 32 H 1.09003 * 109.46739 * 299.99928 * 3 2 1 33 33 H 1.09000 * 109.46969 * 64.39638 * 4 3 2 34 34 H 1.08995 * 109.47200 * 304.38812 * 4 3 2 35 35 H 0.96996 * 119.99978 * 123.00801 * 6 5 4 36 36 H 1.08000 * 125.42103 * 179.87049 * 11 10 9 37 37 H 1.09002 * 109.46902 * 89.97688 * 14 13 12 38 38 H 1.09004 * 109.47023 * 209.97201 * 14 13 12 39 39 H 1.09000 * 109.47353 * 329.97267 * 14 13 12 40 40 H 1.08999 * 109.49600 * 301.33016 * 15 5 4 41 41 H 1.09002 * 109.49386 * 61.42713 * 15 5 4 42 42 H 1.09000 * 109.58694 * 185.57589 * 16 15 5 43 43 H 1.09010 * 109.58893 * 65.15782 * 16 15 5 44 44 H 0.97004 * 119.99500 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.59064 * 186.60440 * 26 17 16 46 46 H 1.09007 * 109.58255 * 66.17862 * 26 17 16 47 47 H 1.08994 * 109.49507 * 298.57843 * 27 5 4 48 48 H 1.08997 * 109.49338 * 58.67794 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 4.1576 2.5779 0.1098 6 7 3.6742 3.4169 -0.9896 7 6 3.8558 3.0251 -2.2663 8 8 4.5000 2.0216 -2.5090 9 6 3.2771 3.8087 -3.3636 10 8 2.5460 4.9419 -3.2489 11 6 2.2092 5.3342 -4.4814 12 7 2.7086 4.4958 -5.3495 13 6 3.3757 3.5389 -4.6964 14 6 4.1036 2.3756 -5.3191 15 6 3.7595 3.2092 1.4459 16 6 4.3555 4.6174 1.5384 17 7 5.8058 4.5325 1.3195 18 6 6.6809 5.0665 2.2274 19 1 6.4259 5.0852 3.2767 20 6 7.8957 5.5838 1.7991 21 7 8.1202 5.7583 0.5139 22 14 9.2119 6.0322 3.0465 23 1 9.5901 4.8242 3.8229 24 1 10.4062 6.5589 2.3384 25 1 8.6858 7.0695 3.9698 26 6 6.2995 3.8633 0.1082 27 6 5.6818 2.4635 0.0317 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8622 0.7132 -0.9276 34 1 3.8522 0.5770 0.8471 35 1 3.2233 4.2542 -0.7987 36 1 1.6215 6.2080 -4.7215 37 1 5.1368 2.6590 -5.5199 38 1 4.0860 1.5275 -4.6346 39 1 3.6146 2.0989 -6.2532 40 1 2.6731 3.2690 1.5107 41 1 4.1403 2.5985 2.2646 42 1 4.1588 5.0332 2.5266 43 1 3.9075 5.2547 0.7759 44 1 8.9693 6.1195 0.2146 45 1 7.3854 3.7815 0.1527 46 1 6.0100 4.4390 -0.7710 47 1 6.0443 1.8599 0.8637 48 1 5.9633 1.9925 -0.9100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151052180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:59 Heat of formation + Delta-G solvation = -33.864725 kcal Electronic energy + Delta-G solvation = -31364.316349 eV Core-core repulsion = 27229.082652 eV Total energy + Delta-G solvation = -4135.233697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.47571 -40.33971 -37.93940 -37.34856 -35.42946 -34.56960 -32.35625 -31.63279 -31.28718 -30.16876 -28.96861 -27.74679 -26.57312 -24.93151 -23.93592 -23.18639 -22.29953 -21.86871 -20.79513 -20.33669 -18.75153 -18.26468 -16.99505 -16.88949 -16.53641 -16.39939 -15.99164 -15.22084 -14.95162 -14.74094 -14.62860 -14.49167 -14.05896 -13.89836 -13.47283 -13.28576 -13.20982 -13.12357 -12.99743 -12.69366 -12.36632 -12.22068 -11.72135 -11.55348 -11.47870 -11.17273 -11.11026 -11.08806 -10.96086 -10.85776 -10.73986 -10.45012 -10.30212 -10.05868 -9.93786 -9.80286 -9.49896 -9.30333 -9.03317 -8.68042 -8.48927 -6.63721 -5.79867 -3.29133 0.82926 2.37632 2.45445 3.20862 3.34239 3.36690 3.42630 3.43056 3.74314 3.96319 4.46653 4.69209 4.75078 5.00425 5.10625 5.19437 5.23168 5.30266 5.31972 5.41108 5.42665 5.45811 5.46611 5.51924 5.57316 5.66980 5.72484 5.81427 5.88976 5.95051 6.07654 6.12183 6.25134 6.30118 6.34008 6.43145 6.60946 6.63624 6.72182 6.84342 6.95345 7.14823 7.38449 7.41215 7.68669 7.72247 7.77696 8.25610 8.45805 9.20295 9.81376 10.39389 11.27687 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.004282 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.171870 B = 6537.604130 C = 8320.052881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.065 3.935 4 C -0.130 4.130 5 C 0.194 3.806 6 N -0.698 5.698 7 C 0.610 3.390 8 O -0.508 6.508 9 C -0.106 4.106 10 O -0.190 6.190 11 C 0.195 3.805 12 N -0.495 5.495 13 C 0.073 3.927 14 C -0.080 4.080 15 C -0.141 4.141 16 C 0.145 3.855 17 N -0.590 5.590 18 C -0.257 4.257 19 H 0.063 0.937 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.179 3.821 27 C -0.151 4.151 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.403 0.597 36 H 0.254 0.746 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.013 0.987 44 H 0.254 0.746 45 H 0.086 0.914 46 H 0.016 0.984 47 H 0.064 0.936 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.527 -5.479 -6.434 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.168 4.168 5 C 0.109 3.891 6 N -0.349 5.349 7 C 0.395 3.605 8 O -0.386 6.386 9 C -0.161 4.161 10 O -0.076 6.076 11 C -0.030 4.030 12 N -0.224 5.224 13 C -0.051 4.051 14 C -0.137 4.137 15 C -0.180 4.180 16 C 0.018 3.982 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.081 0.919 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.053 3.947 27 C -0.191 4.191 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.239 0.761 36 H 0.270 0.730 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.034 0.966 47 H 0.082 0.918 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.881 -6.196 -7.227 17.666 hybrid contribution 0.161 1.294 1.273 1.822 sum -14.720 -4.902 -5.954 16.618 Atomic orbital electron populations 1.22693 0.81604 1.02400 0.99723 1.87879 1.19223 1.28608 1.95375 1.22601 0.94669 0.84077 0.99767 1.21993 0.92385 0.97542 1.04911 1.20320 0.95506 0.87991 0.85328 1.46042 1.59064 1.24943 1.04806 1.16256 0.79698 0.83531 0.81047 1.90797 1.39531 1.25248 1.83050 1.23184 1.04964 0.90543 0.97454 1.84505 1.53805 1.34948 1.34304 1.28259 0.98544 0.99997 0.76233 1.70318 1.13157 1.04449 1.34518 1.22034 0.97357 0.96880 0.88835 1.20383 0.98988 0.93358 1.00987 1.22428 0.99347 1.00644 0.95611 1.20879 0.86606 0.91934 0.98757 1.44009 0.99028 1.64502 1.23712 1.19106 0.97933 1.33173 0.88455 0.91919 1.25167 0.99885 0.98296 0.95845 1.69977 1.24093 1.47660 1.12884 0.86357 0.81292 0.78371 0.80595 1.20932 1.21627 1.20896 1.20696 0.99518 0.86775 0.87682 1.22622 0.92177 1.02164 1.02096 0.89875 0.94248 0.94439 0.93147 0.94022 0.89096 0.90246 0.76150 0.73018 0.89943 0.88538 0.90805 0.92425 0.90205 0.92424 0.96908 0.93546 0.89553 0.96584 0.91753 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.40 10.70 -35.23 -0.38 -5.78 16 3 C 0.07 0.87 5.50 37.16 0.20 1.07 16 4 C -0.13 -1.93 4.32 -26.73 -0.12 -2.05 16 5 C 0.19 3.10 0.35 -131.77 -0.05 3.05 16 6 N -0.70 -10.78 3.35 -48.84 -0.16 -10.94 16 7 C 0.61 9.89 6.96 -12.83 -0.09 9.80 16 8 O -0.51 -9.03 11.06 5.20 0.06 -8.97 16 9 C -0.11 -1.59 7.18 -36.84 -0.26 -1.85 16 10 O -0.19 -2.45 10.58 4.42 0.05 -2.40 16 11 C 0.19 2.03 13.21 52.24 0.69 2.72 16 12 N -0.49 -6.56 11.26 -10.89 -0.12 -6.68 16 13 C 0.07 1.04 7.16 -82.47 -0.59 0.45 16 14 C -0.08 -1.00 9.87 36.01 0.36 -0.65 16 15 C -0.14 -2.19 4.72 -26.61 -0.13 -2.32 16 16 C 0.15 2.78 6.24 -3.71 -0.02 2.76 16 17 N -0.59 -14.10 2.98 -172.32 -0.51 -14.61 16 18 C -0.26 -6.85 9.57 -15.06 -0.14 -6.99 16 19 H 0.06 1.64 7.85 -52.48 -0.41 1.22 16 20 C 0.01 0.20 5.04 -17.43 -0.09 0.11 16 21 N -0.90 -25.97 11.09 55.49 0.62 -25.35 16 22 Si 0.90 21.46 29.57 -169.99 -5.03 16.43 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.18 4.22 4.99 -3.71 -0.02 4.20 16 27 C -0.15 -2.92 4.71 -26.61 -0.13 -3.04 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.62 6.27 -51.93 -0.33 0.29 16 32 H 0.04 0.56 7.46 -51.93 -0.39 0.17 16 33 H 0.09 1.51 6.21 -51.93 -0.32 1.18 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.88 6.98 -40.82 -0.29 5.59 16 36 H 0.25 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.27 6.47 -51.93 -0.34 0.94 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.01 0.25 6.88 -51.92 -0.36 -0.11 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.09 2.34 6.14 -51.93 -0.32 2.02 16 46 H 0.02 0.41 7.74 -51.93 -0.40 0.00 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.07 1.47 6.25 -51.93 -0.32 1.14 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -32.14 376.79 -6.23 -38.37 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.15 Total: 5.57 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 0.73 Total: 8.70 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.18 Total: -57.59 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.27 Total: -17.15 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.14 -6.23 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151052180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.501 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds