Wall clock time and date at job start Tue Mar 31 2020 20:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00356 * 2 1 4 4 C 1.53001 * 109.46856 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46666 * 184.39247 * 4 3 2 6 6 N 1.46503 * 109.46225 * 303.06100 * 5 4 3 7 7 C 1.34776 * 119.99729 * 303.01430 * 6 5 4 8 8 O 1.21688 * 119.99978 * 355.01756 * 7 6 5 9 9 C 1.46726 * 119.99978 * 175.02759 * 7 6 5 10 10 O 1.35344 * 126.64353 * 0.23865 * 9 7 6 11 11 C 1.33664 * 107.68330 * 180.17355 * 10 9 7 12 12 N 1.30611 * 109.15525 * 359.61289 * 11 10 9 13 13 C 1.33690 * 108.99576 * 0.23927 * 12 11 10 14 14 C 1.50702 * 126.27330 * 180.02562 * 13 12 11 15 15 C 1.53042 * 109.44963 * 63.02548 * 5 4 3 16 16 C 1.53187 * 109.31230 * 181.37659 * 15 5 4 17 17 N 1.46928 * 108.77810 * 305.36888 * 16 15 5 18 18 C 1.36943 * 120.62856 * 233.62882 * 17 16 15 19 19 H 1.08004 * 119.99694 * 31.76095 * 18 17 16 20 20 C 1.38805 * 120.00135 * 211.76046 * 18 17 16 21 21 N 1.31624 * 119.99656 * 10.84269 * 20 18 17 22 22 Si 1.86799 * 120.00211 * 190.84689 * 20 18 17 23 23 H 1.48504 * 109.47148 * 59.99861 * 22 20 18 24 24 H 1.48502 * 109.47333 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46941 * 299.99755 * 22 20 18 26 26 C 1.46921 * 118.74164 * 53.60467 * 17 16 15 27 27 C 1.53043 * 109.45862 * 183.08780 * 5 4 3 28 28 H 1.08993 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46646 * 299.99696 * 1 2 3 30 30 H 1.08995 * 109.46959 * 59.99699 * 1 2 3 31 31 H 1.08998 * 109.47020 * 60.00168 * 3 2 1 32 32 H 1.09003 * 109.46739 * 299.99928 * 3 2 1 33 33 H 1.09000 * 109.46969 * 64.39638 * 4 3 2 34 34 H 1.08995 * 109.47200 * 304.38812 * 4 3 2 35 35 H 0.96996 * 119.99978 * 123.00801 * 6 5 4 36 36 H 1.08000 * 125.42103 * 179.87049 * 11 10 9 37 37 H 1.09002 * 109.46902 * 89.97688 * 14 13 12 38 38 H 1.09004 * 109.47023 * 209.97201 * 14 13 12 39 39 H 1.09000 * 109.47353 * 329.97267 * 14 13 12 40 40 H 1.08999 * 109.49600 * 301.33016 * 15 5 4 41 41 H 1.09002 * 109.49386 * 61.42713 * 15 5 4 42 42 H 1.09000 * 109.58694 * 185.57589 * 16 15 5 43 43 H 1.09010 * 109.58893 * 65.15782 * 16 15 5 44 44 H 0.97004 * 119.99500 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.59064 * 186.60440 * 26 17 16 46 46 H 1.09007 * 109.58255 * 66.17862 * 26 17 16 47 47 H 1.08994 * 109.49507 * 298.57843 * 27 5 4 48 48 H 1.08997 * 109.49338 * 58.67794 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 4.1576 2.5779 0.1098 6 7 3.6742 3.4169 -0.9896 7 6 3.8558 3.0251 -2.2663 8 8 4.5000 2.0216 -2.5090 9 6 3.2771 3.8087 -3.3636 10 8 2.5460 4.9419 -3.2489 11 6 2.2092 5.3342 -4.4814 12 7 2.7086 4.4958 -5.3495 13 6 3.3757 3.5389 -4.6964 14 6 4.1036 2.3756 -5.3191 15 6 3.7595 3.2092 1.4459 16 6 4.3555 4.6174 1.5384 17 7 5.8058 4.5325 1.3195 18 6 6.6809 5.0665 2.2274 19 1 6.4259 5.0852 3.2767 20 6 7.8957 5.5838 1.7991 21 7 8.1202 5.7583 0.5139 22 14 9.2119 6.0322 3.0465 23 1 9.5901 4.8242 3.8229 24 1 10.4062 6.5589 2.3384 25 1 8.6858 7.0695 3.9698 26 6 6.2995 3.8633 0.1082 27 6 5.6818 2.4635 0.0317 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8622 0.7132 -0.9276 34 1 3.8522 0.5770 0.8471 35 1 3.2233 4.2542 -0.7987 36 1 1.6215 6.2080 -4.7215 37 1 5.1368 2.6590 -5.5199 38 1 4.0860 1.5275 -4.6346 39 1 3.6146 2.0989 -6.2532 40 1 2.6731 3.2690 1.5107 41 1 4.1403 2.5985 2.2646 42 1 4.1588 5.0332 2.5266 43 1 3.9075 5.2547 0.7759 44 1 8.9693 6.1195 0.2146 45 1 7.3854 3.7815 0.1527 46 1 6.0100 4.4390 -0.7710 47 1 6.0443 1.8599 0.8637 48 1 5.9633 1.9925 -0.9100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151052180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:58 Heat of formation + Delta-G solvation = -57.748327 kcal Electronic energy + Delta-G solvation = -31365.352020 eV Core-core repulsion = 27229.082652 eV Total energy + Delta-G solvation = -4136.269368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.46151 -41.65573 -39.11888 -38.60962 -36.55693 -36.09811 -33.77515 -33.20308 -32.37939 -31.78529 -30.44522 -28.84514 -27.65380 -26.43299 -25.03914 -24.64297 -23.74868 -23.02596 -22.07137 -21.72169 -20.20530 -19.43269 -18.71280 -17.96266 -17.49522 -17.46404 -16.98050 -16.83034 -16.48107 -15.87555 -15.78329 -15.69497 -15.56399 -15.21068 -15.13414 -14.85356 -14.36754 -14.28699 -14.07094 -13.97354 -13.83573 -13.25864 -13.18427 -12.99985 -12.80112 -12.72587 -12.59261 -12.30656 -12.25099 -12.15483 -12.09826 -11.98479 -11.92696 -11.81642 -11.43107 -11.32383 -10.78888 -10.54662 -10.53092 -10.21974 -9.88039 -8.60262 -7.85299 -5.36772 -0.21333 1.40507 1.45461 1.46820 1.49216 1.55294 2.01298 2.18376 2.51290 2.78537 3.14346 3.31240 3.60947 3.67962 3.69647 3.84635 3.96504 4.07944 4.15028 4.33506 4.41541 4.42986 4.45190 4.52039 4.52527 4.57351 4.66200 4.67419 4.71517 4.80981 4.82968 4.85409 4.98825 5.00949 5.04053 5.10628 5.15279 5.24189 5.30677 5.33829 5.49083 5.55594 5.65458 5.76133 6.23482 6.33435 6.42104 6.57654 7.03195 7.16953 7.87188 8.39811 9.19771 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.004282 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.171870 B = 6537.604130 C = 8320.052881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.073 3.927 4 C -0.121 4.121 5 C 0.201 3.799 6 N -0.694 5.694 7 C 0.607 3.393 8 O -0.533 6.533 9 C -0.136 4.136 10 O -0.194 6.194 11 C 0.224 3.776 12 N -0.523 5.523 13 C 0.069 3.931 14 C -0.079 4.079 15 C -0.127 4.127 16 C 0.141 3.859 17 N -0.606 5.606 18 C -0.262 4.262 19 H 0.069 0.931 20 C -0.048 4.048 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.195 3.805 27 C -0.139 4.139 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.309 0.691 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.247 0.753 45 H 0.043 0.957 46 H -0.010 1.010 47 H 0.061 0.939 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.210 -5.132 -5.744 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.003 4.003 4 C -0.159 4.159 5 C 0.116 3.884 6 N -0.345 5.345 7 C 0.393 3.607 8 O -0.412 6.412 9 C -0.191 4.191 10 O -0.081 6.081 11 C -0.001 4.001 12 N -0.252 5.252 13 C -0.054 4.054 14 C -0.136 4.136 15 C -0.166 4.166 16 C 0.015 3.985 17 N -0.330 5.330 18 C -0.392 4.392 19 H 0.087 0.913 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.794 3.206 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.198 1.198 26 C 0.069 3.931 27 C -0.178 4.178 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.324 0.676 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.008 0.992 47 H 0.080 0.920 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.611 -5.857 -6.521 19.671 hybrid contribution 0.897 1.236 0.978 1.814 sum -16.714 -4.621 -5.542 18.205 Atomic orbital electron populations 1.22916 0.79587 1.03810 1.00708 1.87838 1.21451 1.28706 1.95559 1.22471 0.93100 0.84299 1.00446 1.21814 0.93993 0.96134 1.03992 1.20142 0.92956 0.89234 0.86059 1.45949 1.58978 1.25046 1.04530 1.16440 0.79328 0.83400 0.81488 1.90779 1.40576 1.26353 1.83501 1.22871 1.07195 0.91959 0.97121 1.84504 1.53799 1.34330 1.35443 1.29584 0.95948 0.99699 0.74844 1.70361 1.14433 1.05157 1.35224 1.22322 0.96889 0.97235 0.88936 1.20383 0.99029 0.92699 1.01457 1.22302 1.01428 0.97909 0.94961 1.21071 0.83828 0.94382 0.99172 1.44220 1.01003 1.64662 1.23096 1.19486 0.98523 1.31905 0.89288 0.91309 1.25900 1.02062 0.99085 0.97321 1.70160 1.24085 1.49279 1.14710 0.85369 0.78497 0.78227 0.78486 1.20429 1.22478 1.19842 1.20308 0.97189 0.88694 0.86902 1.22398 0.94996 0.99047 1.01407 0.88407 0.92757 0.93883 0.91362 0.94256 0.91108 0.89921 0.75537 0.67638 0.90066 0.89570 0.89000 0.88537 0.90122 0.91873 0.96288 0.94398 0.93839 0.99164 0.92003 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.62 10.70 -148.98 -1.59 -12.21 16 3 C 0.07 1.78 5.50 71.98 0.40 2.18 16 4 C -0.12 -3.48 4.32 30.60 0.13 -3.34 16 5 C 0.20 6.31 0.35 3.63 0.00 6.31 16 6 N -0.69 -21.13 3.35 -426.65 -1.43 -22.56 16 7 C 0.61 19.96 6.96 86.46 0.60 20.56 16 8 O -0.53 -19.59 11.06 -4.31 -0.05 -19.64 16 9 C -0.14 -4.03 7.18 24.05 0.17 -3.86 16 10 O -0.19 -4.68 10.58 -7.09 -0.07 -4.75 16 11 C 0.22 4.02 13.21 130.42 1.72 5.74 16 12 N -0.52 -12.97 11.26 -303.14 -3.41 -16.38 16 13 C 0.07 1.97 7.16 41.83 0.30 2.27 16 14 C -0.08 -1.99 9.87 71.24 0.70 -1.29 16 15 C -0.13 -3.66 4.72 30.67 0.14 -3.51 16 16 C 0.14 5.20 6.24 86.36 0.54 5.74 16 17 N -0.61 -29.22 2.98 -699.10 -2.09 -31.31 16 18 C -0.26 -14.02 9.57 84.03 0.80 -13.22 16 19 H 0.07 3.54 7.85 -2.91 -0.02 3.52 16 20 C -0.05 -2.68 5.04 84.86 0.43 -2.25 16 21 N -0.94 -55.88 11.09 21.65 0.24 -55.64 16 22 Si 0.97 44.74 29.57 68.60 2.03 46.77 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 C 0.20 9.56 4.99 86.36 0.43 9.99 16 27 C -0.14 -5.51 4.71 30.67 0.14 -5.37 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.41 6.27 -2.39 -0.01 1.39 16 32 H 0.04 0.98 7.46 -2.39 -0.02 0.96 16 33 H 0.07 2.36 6.21 -2.39 -0.01 2.35 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.41 11.44 6.98 -92.71 -0.65 10.79 16 36 H 0.31 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.09 2.36 6.47 -2.38 -0.02 2.34 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.10 2.10 6.35 -2.39 -0.02 2.08 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 43 H 0.02 0.69 6.88 -2.38 -0.02 0.68 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 45 H 0.04 2.49 6.14 -2.39 -0.01 2.47 16 46 H -0.01 -0.52 7.74 -2.38 -0.02 -0.54 16 47 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.06 2.64 6.25 -2.39 -0.01 2.63 16 Total: -1.00 -72.66 376.79 1.73 -70.92 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.34 Total: 23.17 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 7.77 Total: 21.63 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -6.69 Total: -125.88 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.72 Total: -36.61 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -72.66 1.73 -70.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151052180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.176 kcal (2) G-P(sol) polarization free energy of solvation -72.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds