Wall clock time and date at job start Tue Mar 31 2020 20:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47265 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47027 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46471 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99739 * 180.02562 * 13 12 11 15 15 C 1.50692 * 109.47383 * 180.02562 * 14 13 12 16 16 O 1.21297 * 120.00269 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00381 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00437 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99763 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00093 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00129 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99981 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47450 * 90.00331 * 22 20 18 24 24 H 1.48503 * 109.46762 * 210.00027 * 22 20 18 25 25 H 1.48498 * 109.47053 * 329.99870 * 22 20 18 26 26 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 27 27 C 1.50706 * 127.02111 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 30 30 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 31 31 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 32 32 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 33 33 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 34 34 H 0.96997 * 120.00600 * 359.97438 * 9 7 6 35 35 H 1.09009 * 109.47024 * 299.99297 * 10 9 7 36 36 H 1.09000 * 109.47482 * 59.99504 * 10 9 7 37 37 H 1.08997 * 109.47039 * 299.99787 * 11 10 9 38 38 H 1.09008 * 109.46873 * 59.99595 * 11 10 9 39 39 H 1.08997 * 109.47331 * 299.99968 * 12 11 10 40 40 H 1.08999 * 109.46789 * 60.00058 * 12 11 10 41 41 H 1.00897 * 111.00175 * 56.04942 * 13 12 11 42 42 H 1.09006 * 109.47060 * 300.00297 * 14 13 12 43 43 H 1.08998 * 109.46897 * 59.99534 * 14 13 12 44 44 H 0.97002 * 120.00010 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00367 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47359 * 270.03118 * 27 26 2 47 47 H 1.09003 * 109.46910 * 30.02795 * 27 26 2 48 48 H 1.08995 * 109.46868 * 150.02195 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 6.6891 -2.5882 -1.1671 11 6 7.1146 -2.8691 -2.6096 12 6 8.3931 -3.7096 -2.6097 13 7 8.8013 -3.9798 -3.9948 14 6 10.0280 -4.7870 -4.0341 15 6 10.4153 -5.0428 -5.4678 16 8 9.7366 -4.5961 -6.3683 17 7 11.5165 -5.7670 -5.7495 18 6 11.8692 -5.9992 -7.0538 19 1 11.2643 -5.6022 -7.8556 20 6 13.0042 -6.7463 -7.3441 21 7 13.3420 -6.9694 -8.5943 22 14 14.0500 -7.4336 -5.9572 23 1 13.5576 -8.7853 -5.5890 24 1 15.4637 -7.5261 -6.4025 25 1 13.9602 -6.5357 -4.7779 26 6 2.2850 -1.0931 0.0005 27 6 1.8309 -2.5301 0.0017 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3634 -0.5135 0.8902 31 1 4.3626 2.7433 0.0008 32 1 5.3460 1.5568 0.8918 33 1 5.3473 1.5567 -0.8882 34 1 5.0597 -1.5169 -2.0070 35 1 7.4819 -2.0443 -0.6534 36 1 6.5035 -3.5313 -0.6532 37 1 6.3218 -3.4131 -3.1230 38 1 7.3001 -1.9260 -3.1239 39 1 9.1859 -3.1653 -2.0965 40 1 8.2080 -4.6526 -2.0953 41 1 8.9164 -3.1211 -4.5119 42 1 10.8324 -4.2504 -3.5310 43 1 9.8539 -5.7372 -3.5292 44 1 12.0596 -6.1239 -5.0293 45 1 14.1346 -7.4906 -8.7971 46 1 1.7212 -2.8757 1.0296 47 1 0.8728 -2.6088 -0.5122 48 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162103924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:15 Heat of formation + Delta-G solvation = -70.540289 kcal Electronic energy + Delta-G solvation = -27470.714780 eV Core-core repulsion = 23333.890711 eV Total energy + Delta-G solvation = -4136.824069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.99300 -39.73117 -38.51641 -36.63928 -34.92002 -34.66966 -33.91194 -33.50851 -31.72631 -31.34731 -30.20396 -28.62614 -27.36535 -25.43007 -24.65392 -23.56428 -22.58345 -21.79647 -20.45532 -19.62201 -19.35039 -18.33587 -17.54328 -16.99142 -16.49747 -16.19933 -16.10024 -15.77441 -15.42700 -14.94314 -14.59692 -14.53996 -14.16921 -14.00810 -13.95807 -13.74810 -13.48430 -13.38575 -13.24180 -13.15427 -13.14798 -12.92518 -12.84840 -12.61416 -12.38715 -12.17080 -11.94624 -11.75110 -11.65975 -11.55683 -11.19984 -11.03267 -10.60172 -10.40071 -9.98392 -9.78345 -9.58203 -9.40718 -8.69510 -8.61560 -8.21300 -8.16438 -6.31950 -3.83493 1.19185 1.78909 2.21150 2.33142 2.91913 3.02033 3.06684 3.14753 3.72857 4.00033 4.05594 4.10219 4.35642 4.42808 4.62354 4.70742 4.73636 4.78792 4.84898 4.94696 4.97098 4.97401 5.02559 5.11577 5.21085 5.25723 5.27890 5.30641 5.34102 5.42303 5.47288 5.50223 5.55726 5.61687 5.74898 5.79241 5.88241 5.92424 5.97752 6.04035 6.11121 6.69953 7.05024 7.14714 7.53521 7.57494 7.87472 8.13519 8.58841 8.94002 9.41526 9.81631 10.81143 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.001456 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.587112 B =19229.665160 C =19362.264245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 O -0.171 6.171 4 C 0.043 3.957 5 C -0.081 4.081 6 C -0.229 4.229 7 C 0.594 3.406 8 O -0.532 6.532 9 N -0.720 5.720 10 C 0.120 3.880 11 C -0.129 4.129 12 C 0.063 3.937 13 N -0.669 5.669 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.565 6.565 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.146 4.146 27 C -0.084 4.084 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.351 0.649 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.371 0.629 45 H 0.273 0.727 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.265 14.984 21.178 34.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 O -0.068 6.068 4 C -0.008 4.008 5 C -0.137 4.137 6 C -0.233 4.233 7 C 0.379 3.621 8 O -0.408 6.408 9 N -0.372 5.372 10 C -0.004 4.004 11 C -0.168 4.168 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.447 6.447 17 N -0.230 5.230 18 C -0.435 4.435 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.148 4.148 27 C -0.141 4.141 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.170 0.830 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.711 14.671 21.084 34.286 hybrid contribution 1.599 -0.056 0.842 1.808 sum -21.112 14.615 21.927 33.765 Atomic orbital electron populations 1.20322 0.84648 1.04124 1.03726 1.22001 0.93808 0.83163 1.07281 1.83677 1.15938 1.35251 1.71962 1.22471 0.83324 0.93273 1.01758 1.20464 0.91650 0.97259 1.04371 1.20949 0.93900 0.93181 1.15285 1.17282 0.82336 0.78765 0.83722 1.90814 1.63436 1.55173 1.31414 1.46021 1.27955 1.54638 1.08537 1.21373 0.85955 0.95537 0.97542 1.21746 0.99007 1.00956 0.95049 1.21829 0.95217 0.99310 0.90376 1.60033 1.33954 1.24497 1.11719 1.21703 0.91187 0.99014 0.96567 1.19709 0.83051 0.83874 0.89856 1.90563 1.52966 1.53673 1.47529 1.42206 1.24025 1.48585 1.08152 1.19437 1.09768 1.31520 0.82743 0.86285 1.25039 0.97186 0.97407 0.96491 1.69621 1.26200 1.39238 1.17050 0.86665 0.80940 0.79928 0.81804 1.19579 1.20180 1.19530 1.21038 0.89941 0.96528 1.07306 1.20198 1.01395 0.89968 1.02544 0.90421 0.89490 0.89586 0.89792 0.89022 0.89105 0.76184 0.91272 0.91081 0.90001 0.91151 0.95173 0.90721 0.83002 0.93698 0.89399 0.79666 0.91603 0.91001 0.91062 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 9.93 36.01 0.36 0.06 16 2 C -0.01 -0.11 7.28 -35.74 -0.26 -0.37 16 3 O -0.17 -1.57 10.52 7.65 0.08 -1.49 16 4 C 0.04 0.39 7.37 -34.96 -0.26 0.13 16 5 C -0.08 -0.49 10.18 36.01 0.37 -0.12 16 6 C -0.23 -2.34 6.07 -103.28 -0.63 -2.96 16 7 C 0.59 6.70 7.41 -12.54 -0.09 6.61 16 8 O -0.53 -8.00 17.11 5.27 0.09 -7.91 16 9 N -0.72 -6.29 5.55 -61.39 -0.34 -6.63 16 10 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 11 C -0.13 -1.13 5.59 -26.73 -0.15 -1.28 16 12 C 0.06 0.67 5.69 -3.82 -0.02 0.65 16 13 N -0.67 -9.94 6.13 -115.06 -0.70 -10.64 16 14 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 15 C 0.45 10.15 7.82 -10.99 -0.09 10.06 16 16 O -0.57 -15.12 15.78 5.54 0.09 -15.03 16 17 N -0.59 -14.03 5.09 -10.97 -0.06 -14.08 16 18 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 19 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 22 Si 0.88 19.32 27.74 -169.99 -4.71 14.60 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 26 C -0.15 -1.33 6.37 -102.50 -0.65 -1.98 16 27 C -0.08 -0.60 10.15 36.01 0.37 -0.24 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.40 2.76 8.46 -40.82 -0.35 2.42 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.35 5.34 8.43 -39.29 -0.33 5.01 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.36 7.90 -51.93 -0.41 -0.06 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 410.49 15.07 6.19 6.19 Total: -1.00 -36.49 410.49 -7.60 -44.09 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -7.64 Total: 11.28 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.36 Total: 4.57 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.33 Total: -56.29 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.26 Total: -24.44 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.49 -7.60 -44.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162103924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.455 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds