Wall clock time and date at job start Tue Mar 31 2020 20:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47265 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47027 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46471 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99739 * 180.02562 * 13 12 11 15 15 C 1.50692 * 109.47383 * 180.02562 * 14 13 12 16 16 O 1.21297 * 120.00269 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00381 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00437 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99763 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00093 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00129 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99981 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47450 * 90.00331 * 22 20 18 24 24 H 1.48503 * 109.46762 * 210.00027 * 22 20 18 25 25 H 1.48498 * 109.47053 * 329.99870 * 22 20 18 26 26 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 27 27 C 1.50706 * 127.02111 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 30 30 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 31 31 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 32 32 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 33 33 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 34 34 H 0.96997 * 120.00600 * 359.97438 * 9 7 6 35 35 H 1.09009 * 109.47024 * 299.99297 * 10 9 7 36 36 H 1.09000 * 109.47482 * 59.99504 * 10 9 7 37 37 H 1.08997 * 109.47039 * 299.99787 * 11 10 9 38 38 H 1.09008 * 109.46873 * 59.99595 * 11 10 9 39 39 H 1.08997 * 109.47331 * 299.99968 * 12 11 10 40 40 H 1.08999 * 109.46789 * 60.00058 * 12 11 10 41 41 H 1.00897 * 111.00175 * 56.04942 * 13 12 11 42 42 H 1.09006 * 109.47060 * 300.00297 * 14 13 12 43 43 H 1.08998 * 109.46897 * 59.99534 * 14 13 12 44 44 H 0.97002 * 120.00010 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00367 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47359 * 270.03118 * 27 26 2 47 47 H 1.09003 * 109.46910 * 30.02795 * 27 26 2 48 48 H 1.08995 * 109.46868 * 150.02195 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 6.6891 -2.5882 -1.1671 11 6 7.1146 -2.8691 -2.6096 12 6 8.3931 -3.7096 -2.6097 13 7 8.8013 -3.9798 -3.9948 14 6 10.0280 -4.7870 -4.0341 15 6 10.4153 -5.0428 -5.4678 16 8 9.7366 -4.5961 -6.3683 17 7 11.5165 -5.7670 -5.7495 18 6 11.8692 -5.9992 -7.0538 19 1 11.2643 -5.6022 -7.8556 20 6 13.0042 -6.7463 -7.3441 21 7 13.3420 -6.9694 -8.5943 22 14 14.0500 -7.4336 -5.9572 23 1 13.5576 -8.7853 -5.5890 24 1 15.4637 -7.5261 -6.4025 25 1 13.9602 -6.5357 -4.7779 26 6 2.2850 -1.0931 0.0005 27 6 1.8309 -2.5301 0.0017 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3634 -0.5135 0.8902 31 1 4.3626 2.7433 0.0008 32 1 5.3460 1.5568 0.8918 33 1 5.3473 1.5567 -0.8882 34 1 5.0597 -1.5169 -2.0070 35 1 7.4819 -2.0443 -0.6534 36 1 6.5035 -3.5313 -0.6532 37 1 6.3218 -3.4131 -3.1230 38 1 7.3001 -1.9260 -3.1239 39 1 9.1859 -3.1653 -2.0965 40 1 8.2080 -4.6526 -2.0953 41 1 8.9164 -3.1211 -4.5119 42 1 10.8324 -4.2504 -3.5310 43 1 9.8539 -5.7372 -3.5292 44 1 12.0596 -6.1239 -5.0293 45 1 14.1346 -7.4906 -8.7971 46 1 1.7212 -2.8757 1.0296 47 1 0.8728 -2.6088 -0.5122 48 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162103924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:14 Heat of formation + Delta-G solvation = -99.304089 kcal Electronic energy + Delta-G solvation = -27471.962072 eV Core-core repulsion = 23333.890711 eV Total energy + Delta-G solvation = -4138.071361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.62827 -40.60346 -40.29069 -37.67055 -36.15095 -35.67930 -35.26173 -34.12808 -33.75094 -32.33936 -30.62311 -29.30380 -28.62755 -26.63833 -25.54384 -24.70335 -23.47184 -22.60026 -21.31458 -21.15575 -20.35239 -20.14313 -18.24316 -17.87475 -17.60200 -17.29287 -16.97730 -16.79192 -16.70901 -16.37454 -15.73006 -15.54694 -15.32224 -14.93931 -14.81200 -14.61249 -14.42631 -14.34026 -14.24964 -14.14931 -13.90357 -13.68923 -13.50500 -13.44005 -13.34668 -13.22756 -13.04860 -12.89391 -12.73980 -12.44631 -12.40538 -12.23573 -11.97558 -11.85851 -11.51271 -11.30619 -10.47912 -10.44406 -10.24805 -10.21671 -9.32926 -9.28757 -8.41324 -6.02393 0.55277 1.14669 1.30797 1.36289 1.36312 1.45041 1.75176 1.95557 2.16478 2.23325 2.75616 3.15093 3.41114 3.46465 3.68576 3.87362 3.98770 4.05141 4.12192 4.17439 4.22680 4.31528 4.37590 4.44490 4.52047 4.56264 4.56350 4.64395 4.65880 4.68930 4.76477 4.77804 4.82632 4.85932 4.96896 5.03472 5.14081 5.18743 5.20429 5.34917 5.50295 5.52647 5.90364 6.04513 6.07522 6.37670 6.41509 6.59756 6.87949 7.06855 7.39755 7.96219 8.76279 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.001456 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.587112 B =19229.665160 C =19362.264245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 O -0.180 6.180 4 C 0.040 3.960 5 C -0.081 4.081 6 C -0.256 4.256 7 C 0.597 3.403 8 O -0.577 6.577 9 N -0.707 5.707 10 C 0.126 3.874 11 C -0.117 4.117 12 C 0.064 3.936 13 N -0.688 5.688 14 C 0.062 3.938 15 C 0.447 3.553 16 O -0.615 6.615 17 N -0.591 5.591 18 C -0.331 4.331 19 H 0.055 0.945 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.258 1.258 24 H -0.275 1.275 25 H -0.231 1.231 26 C -0.169 4.169 27 C -0.082 4.082 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.346 0.654 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.355 15.123 23.992 36.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 O -0.077 6.077 4 C -0.012 4.012 5 C -0.137 4.137 6 C -0.260 4.260 7 C 0.384 3.616 8 O -0.457 6.457 9 N -0.358 5.358 10 C 0.002 3.998 11 C -0.155 4.155 12 C -0.065 4.065 13 N -0.321 5.321 14 C -0.071 4.071 15 C 0.235 3.765 16 O -0.499 6.499 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.073 0.927 20 C -0.213 4.213 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.200 1.200 25 H -0.154 1.154 26 C -0.170 4.170 27 C -0.138 4.138 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.250 0.750 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.164 0.836 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.112 0.888 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.826 14.824 23.896 36.219 hybrid contribution 1.501 -0.025 -0.135 1.507 sum -21.325 14.799 23.761 35.190 Atomic orbital electron populations 1.20519 0.81984 1.05183 1.05098 1.22698 0.95278 0.82545 1.05851 1.83697 1.16131 1.35874 1.71985 1.22951 0.83927 0.93460 1.00844 1.20586 0.90815 0.97615 1.04719 1.21061 0.94074 0.93887 1.17012 1.17436 0.82374 0.78315 0.83497 1.90782 1.64784 1.57143 1.32945 1.45939 1.27652 1.53736 1.08446 1.21300 0.85854 0.95237 0.97425 1.21599 0.98100 1.00971 0.94814 1.21895 0.96200 1.00254 0.88126 1.60032 1.33419 1.24436 1.14214 1.21631 0.92858 1.01088 0.91496 1.21020 0.81503 0.81556 0.92388 1.90541 1.54264 1.55038 1.50098 1.42035 1.25015 1.49404 1.06789 1.19021 1.10241 1.33055 0.83676 0.92674 1.26115 0.98206 0.96920 1.00042 1.69803 1.27175 1.40192 1.20299 0.85360 0.77789 0.79874 0.78460 1.18209 1.20039 1.15396 1.21340 0.89666 0.97698 1.08321 1.20220 1.02209 0.88803 1.02605 0.89542 0.87854 0.88301 0.88088 0.89303 0.87969 0.74979 0.91225 0.91666 0.90519 0.90406 0.93547 0.89993 0.83581 0.90452 0.86802 0.77437 0.91137 0.91203 0.88761 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 9.93 71.24 0.71 0.25 16 2 C -0.02 -0.23 7.28 24.76 0.18 -0.05 16 3 O -0.18 -3.15 10.52 4.45 0.05 -3.10 16 4 C 0.04 0.70 7.37 25.26 0.19 0.89 16 5 C -0.08 -0.90 10.18 71.24 0.72 -0.17 16 6 C -0.26 -5.20 6.07 -18.99 -0.12 -5.32 16 7 C 0.60 13.45 7.41 86.65 0.64 14.09 16 8 O -0.58 -17.60 17.11 -4.06 -0.07 -17.67 16 9 N -0.71 -11.78 5.55 -466.40 -2.59 -14.37 16 10 C 0.13 2.03 5.67 86.38 0.49 2.52 16 11 C -0.12 -1.81 5.59 30.60 0.17 -1.64 16 12 C 0.06 1.19 5.69 86.30 0.49 1.68 16 13 N -0.69 -18.95 6.13 -517.93 -3.17 -22.12 16 14 C 0.06 1.81 6.17 85.55 0.53 2.34 16 15 C 0.45 19.97 7.82 87.65 0.69 20.65 16 16 O -0.61 -33.85 15.78 -3.08 -0.05 -33.90 16 17 N -0.59 -27.67 5.09 -306.99 -1.56 -29.23 16 18 C -0.33 -19.37 10.16 84.04 0.85 -18.51 16 19 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 21 N -0.93 -56.25 13.96 21.66 0.30 -55.94 16 22 Si 0.97 38.55 27.74 68.60 1.90 40.45 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 26 C -0.17 -2.97 6.37 -18.49 -0.12 -3.09 16 27 C -0.08 -1.11 10.15 71.24 0.72 -0.39 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.41 5.25 8.46 -92.71 -0.78 4.46 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.35 10.07 8.43 -89.70 -0.76 9.31 16 42 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.39 15.03 5.76 -92.71 -0.53 14.50 16 45 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 0.78 7.90 -2.39 -0.02 0.76 16 48 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -85.22 410.49 0.29 -84.93 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -1.13 Total: 38.01 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.62 Total: 12.94 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -7.02 Total: -121.67 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.07 Total: -54.66 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.45 kcal Total: -85.22 0.29 -84.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162103924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.377 kcal (2) G-P(sol) polarization free energy of solvation -85.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds