Wall clock time and date at job start Tue Mar 31 2020 19:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99635 * 2 1 4 4 C 1.52996 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46472 * 299.97343 * 4 3 2 6 6 N 1.46500 * 109.47245 * 60.02565 * 5 4 3 7 7 C 1.34778 * 120.00205 * 180.02562 * 6 5 4 8 8 O 1.21610 * 119.99502 * 0.02562 * 7 6 5 9 9 C 1.47412 * 119.99946 * 180.02562 * 7 6 5 10 10 N 1.36069 * 126.45156 * 0.02562 * 9 7 6 11 11 C 1.29933 * 108.48123 * 179.97438 * 10 9 7 12 12 O 1.34051 * 109.23981 * 0.02562 * 11 10 9 13 13 C 1.34256 * 108.23069 * 359.76630 * 12 11 10 14 14 C 1.50699 * 126.52925 * 180.23356 * 13 12 11 15 15 C 1.53042 * 109.45834 * 179.97438 * 4 3 2 16 16 C 1.53192 * 109.31216 * 178.63240 * 15 4 3 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 4 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.08996 * 109.47883 * 299.99890 * 1 2 3 29 29 H 1.09002 * 109.47085 * 60.00353 * 1 2 3 30 30 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47185 * 59.99551 * 3 2 1 32 32 H 1.08991 * 109.47212 * 299.99475 * 3 2 1 33 33 H 1.09005 * 109.47339 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.47024 * 300.02839 * 5 4 3 35 35 H 0.97003 * 119.99558 * 0.02562 * 6 5 4 36 36 H 1.07998 * 125.38123 * 180.02562 * 11 10 9 37 37 H 1.09005 * 109.46474 * 270.16585 * 14 13 12 38 38 H 1.08997 * 109.47065 * 30.15946 * 14 13 12 39 39 H 1.08991 * 109.47172 * 150.16516 * 14 13 12 40 40 H 1.09002 * 109.49976 * 58.68163 * 15 4 3 41 41 H 1.09004 * 109.52502 * 298.59738 * 15 4 3 42 42 H 1.08997 * 109.58711 * 294.84701 * 16 15 4 43 43 H 1.09004 * 109.70548 * 174.49237 * 16 15 4 44 44 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 46 46 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 47 47 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 48 48 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 6 3.9862 0.4263 1.2506 6 7 3.3908 -0.9122 1.2509 7 6 3.6490 -1.7644 2.2626 8 8 4.3759 -1.4220 3.1754 9 6 3.0503 -3.1115 2.2626 10 7 2.2236 -3.6288 1.3136 11 6 1.9046 -4.8395 1.6609 12 8 2.5026 -5.1378 2.8229 13 6 3.2243 -4.0736 3.2093 14 6 4.0647 -3.9642 4.4554 15 6 4.1575 2.5831 0.0000 16 6 5.6839 2.4584 0.0352 17 7 6.1147 1.6058 -1.0812 18 6 7.0602 2.0442 -1.9694 19 1 7.1781 3.1017 -2.1546 20 6 7.8710 1.1297 -2.6276 21 7 7.9743 -0.1024 -2.1764 22 14 8.8156 1.6479 -4.1537 23 1 10.1485 2.1690 -3.7575 24 1 8.9884 0.4767 -5.0502 25 1 8.0609 2.7098 -4.8663 26 6 5.5072 0.2763 -1.2300 27 6 3.9868 0.4232 -1.2477 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6884 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0729 0.3406 1.2514 34 1 3.6637 0.9676 2.1400 35 1 2.8107 -1.1851 0.5229 36 1 1.2596 -5.5010 1.1017 37 1 3.4549 -3.5775 5.2719 38 1 4.4477 -4.9490 4.7228 39 1 4.8990 -3.2872 4.2726 40 1 3.8171 3.1331 0.8773 41 1 3.8566 3.1152 -0.9025 42 1 5.9921 2.0083 0.9788 43 1 6.1356 3.4455 -0.0635 44 1 8.5406 -0.7415 -2.6366 45 1 5.8402 -0.1751 -2.1644 46 1 5.8007 -0.3554 -0.3915 47 1 3.5248 -0.5639 -1.2585 48 1 3.6870 0.9749 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162142507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:11 Heat of formation + Delta-G solvation = -32.934588 kcal Electronic energy + Delta-G solvation = -31151.755616 eV Core-core repulsion = 27016.562252 eV Total energy + Delta-G solvation = -4135.193364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.45318 -39.88120 -38.44079 -37.02195 -34.85870 -34.46235 -32.94235 -32.38230 -30.86456 -29.92121 -27.80623 -27.59348 -26.16636 -25.58389 -23.80277 -23.47425 -22.23990 -21.77304 -20.82207 -20.18855 -18.65775 -17.73122 -16.93255 -16.64238 -16.25690 -15.87709 -15.70526 -15.53195 -15.24741 -14.72487 -14.65368 -14.41515 -13.94370 -13.70873 -13.50232 -13.38766 -13.23249 -13.12408 -12.78634 -12.69623 -12.48013 -12.20513 -11.85102 -11.61116 -11.36354 -11.33457 -11.19043 -10.88686 -10.79349 -10.67400 -10.49823 -10.23189 -10.12739 -9.92318 -9.72390 -9.61088 -9.46310 -9.33755 -8.98772 -8.48979 -8.37110 -6.60206 -5.73197 -3.15495 1.11320 2.09342 2.51308 3.40433 3.41800 3.47491 3.49509 3.56135 3.84193 4.11384 4.53758 4.61504 4.97304 5.00904 5.11043 5.14077 5.32549 5.34513 5.36021 5.38938 5.42849 5.48253 5.56088 5.61651 5.67355 5.72187 5.77230 5.78196 5.97007 6.04258 6.07820 6.13062 6.27460 6.40990 6.45329 6.65553 6.70802 6.76742 6.86637 6.92848 7.01624 7.22375 7.40192 7.45066 7.75027 7.84541 8.06997 8.50175 8.60857 9.26633 9.90351 10.47059 11.35054 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.003648 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.838923 B = 7674.214655 C = 8670.332389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.386 6.386 3 C 0.070 3.930 4 C -0.059 4.059 5 C 0.131 3.869 6 N -0.687 5.687 7 C 0.593 3.407 8 O -0.548 6.548 9 C -0.067 4.067 10 N -0.455 5.455 11 C 0.165 3.835 12 O -0.204 6.204 13 C 0.035 3.965 14 C -0.075 4.075 15 C -0.119 4.119 16 C 0.143 3.857 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.171 3.829 27 C -0.126 4.126 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.418 0.582 36 H 0.253 0.747 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.021 0.979 47 H 0.056 0.944 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.695 -6.167 9.059 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.305 6.305 3 C -0.006 4.006 4 C -0.060 4.060 5 C 0.007 3.993 6 N -0.342 5.342 7 C 0.377 3.623 8 O -0.428 6.428 9 C -0.187 4.187 10 N -0.184 5.184 11 C -0.063 4.063 12 O -0.091 6.091 13 C -0.022 4.022 14 C -0.132 4.132 15 C -0.159 4.159 16 C 0.017 3.983 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.045 3.955 27 C -0.166 4.166 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.261 0.739 36 H 0.268 0.732 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.039 0.961 47 H 0.074 0.926 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.174 -5.896 9.042 19.446 hybrid contribution -0.041 -0.183 -0.797 0.819 sum -16.215 -6.079 8.245 19.180 Atomic orbital electron populations 1.22666 0.81461 1.02437 0.99443 1.87622 1.19247 1.28344 1.95255 1.22766 0.93919 0.84209 0.99744 1.20800 0.91537 0.97218 0.96399 1.21514 0.99556 0.81598 0.96583 1.46069 1.49210 1.14171 1.24752 1.16719 0.80491 0.82218 0.82844 1.90754 1.38459 1.76724 1.36816 1.21617 1.04408 0.98147 0.94534 1.70779 1.12528 1.08359 1.26713 1.27974 0.99505 0.94307 0.84516 1.84348 1.49227 1.39356 1.36133 1.23741 0.95148 0.84456 0.98825 1.20580 0.98524 1.04179 0.89871 1.21986 0.99316 0.93505 1.01049 1.20932 0.90581 0.95426 0.91410 1.44027 1.44597 1.14889 1.27839 1.19160 1.10317 0.92240 1.16539 0.91747 1.25031 0.97562 0.96602 1.00366 1.70047 1.40716 1.04438 1.39279 0.86338 0.79884 0.77463 0.83324 1.21455 1.21639 1.20551 1.20706 0.86400 0.86701 1.01663 1.22115 1.00843 0.98575 0.95025 0.94629 0.94315 0.89867 0.93698 0.93140 0.89581 0.92433 0.73858 0.73173 0.89268 0.90336 0.86758 0.92696 0.91534 0.96003 0.92569 0.93697 0.89620 0.96128 0.92556 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.50 16 2 O -0.39 -5.36 6.73 -35.23 -0.24 -5.60 16 3 C 0.07 0.97 4.80 37.16 0.18 1.15 16 4 C -0.06 -0.97 0.51 -154.47 -0.08 -1.05 16 5 C 0.13 2.31 3.80 -4.04 -0.02 2.30 16 6 N -0.69 -11.96 4.62 -61.39 -0.28 -12.24 16 7 C 0.59 10.61 7.81 -12.53 -0.10 10.51 16 8 O -0.55 -10.73 14.80 5.27 0.08 -10.65 16 9 C -0.07 -1.04 6.99 -83.02 -0.58 -1.62 16 10 N -0.45 -6.36 11.06 -11.49 -0.13 -6.49 16 11 C 0.17 1.66 13.19 51.96 0.69 2.35 16 12 O -0.20 -2.29 10.73 6.51 0.07 -2.22 16 13 C 0.03 0.45 7.44 -35.08 -0.26 0.19 16 14 C -0.08 -0.79 9.88 36.01 0.36 -0.44 16 15 C -0.12 -1.97 4.91 -26.61 -0.13 -2.10 16 16 C 0.14 2.94 6.05 -3.71 -0.02 2.92 16 17 N -0.59 -14.69 3.00 -172.58 -0.52 -15.20 16 18 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 19 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -26.55 11.18 55.49 0.62 -25.93 16 22 Si 0.90 21.84 29.59 -169.99 -5.03 16.82 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.17 4.11 4.81 -3.93 -0.02 4.09 16 27 C -0.13 -2.44 4.57 -26.83 -0.12 -2.56 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.80 4.99 -51.93 -0.26 1.54 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.42 7.15 4.43 -40.82 -0.18 6.97 16 36 H 0.25 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.11 1.43 6.48 -51.93 -0.34 1.09 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.02 0.47 6.69 -51.93 -0.35 0.12 16 43 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.09 2.34 6.05 -51.93 -0.31 2.03 16 46 H 0.02 0.54 6.70 -51.93 -0.35 0.19 16 47 H 0.06 1.06 6.49 -51.93 -0.34 0.73 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -33.35 376.91 -6.13 -39.48 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.16 Total: 6.22 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 0.77 Total: 10.15 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.31 Total: -59.86 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.09 Total: -18.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.35 -6.13 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162142507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.541 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds