Wall clock time and date at job start Tue Mar 31 2020 19:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99635 * 2 1 4 4 C 1.52996 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46472 * 299.97343 * 4 3 2 6 6 N 1.46500 * 109.47245 * 60.02565 * 5 4 3 7 7 C 1.34778 * 120.00205 * 180.02562 * 6 5 4 8 8 O 1.21610 * 119.99502 * 0.02562 * 7 6 5 9 9 C 1.47412 * 119.99946 * 180.02562 * 7 6 5 10 10 N 1.36069 * 126.45156 * 0.02562 * 9 7 6 11 11 C 1.29933 * 108.48123 * 179.97438 * 10 9 7 12 12 O 1.34051 * 109.23981 * 0.02562 * 11 10 9 13 13 C 1.34256 * 108.23069 * 359.76630 * 12 11 10 14 14 C 1.50699 * 126.52925 * 180.23356 * 13 12 11 15 15 C 1.53042 * 109.45834 * 179.97438 * 4 3 2 16 16 C 1.53192 * 109.31216 * 178.63240 * 15 4 3 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 4 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.08996 * 109.47883 * 299.99890 * 1 2 3 29 29 H 1.09002 * 109.47085 * 60.00353 * 1 2 3 30 30 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47185 * 59.99551 * 3 2 1 32 32 H 1.08991 * 109.47212 * 299.99475 * 3 2 1 33 33 H 1.09005 * 109.47339 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.47024 * 300.02839 * 5 4 3 35 35 H 0.97003 * 119.99558 * 0.02562 * 6 5 4 36 36 H 1.07998 * 125.38123 * 180.02562 * 11 10 9 37 37 H 1.09005 * 109.46474 * 270.16585 * 14 13 12 38 38 H 1.08997 * 109.47065 * 30.15946 * 14 13 12 39 39 H 1.08991 * 109.47172 * 150.16516 * 14 13 12 40 40 H 1.09002 * 109.49976 * 58.68163 * 15 4 3 41 41 H 1.09004 * 109.52502 * 298.59738 * 15 4 3 42 42 H 1.08997 * 109.58711 * 294.84701 * 16 15 4 43 43 H 1.09004 * 109.70548 * 174.49237 * 16 15 4 44 44 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 46 46 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 47 47 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 48 48 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 6 3.9862 0.4263 1.2506 6 7 3.3908 -0.9122 1.2509 7 6 3.6490 -1.7644 2.2626 8 8 4.3759 -1.4220 3.1754 9 6 3.0503 -3.1115 2.2626 10 7 2.2236 -3.6288 1.3136 11 6 1.9046 -4.8395 1.6609 12 8 2.5026 -5.1378 2.8229 13 6 3.2243 -4.0736 3.2093 14 6 4.0647 -3.9642 4.4554 15 6 4.1575 2.5831 0.0000 16 6 5.6839 2.4584 0.0352 17 7 6.1147 1.6058 -1.0812 18 6 7.0602 2.0442 -1.9694 19 1 7.1781 3.1017 -2.1546 20 6 7.8710 1.1297 -2.6276 21 7 7.9743 -0.1024 -2.1764 22 14 8.8156 1.6479 -4.1537 23 1 10.1485 2.1690 -3.7575 24 1 8.9884 0.4767 -5.0502 25 1 8.0609 2.7098 -4.8663 26 6 5.5072 0.2763 -1.2300 27 6 3.9868 0.4232 -1.2477 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6884 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0729 0.3406 1.2514 34 1 3.6637 0.9676 2.1400 35 1 2.8107 -1.1851 0.5229 36 1 1.2596 -5.5010 1.1017 37 1 3.4549 -3.5775 5.2719 38 1 4.4477 -4.9490 4.7228 39 1 4.8990 -3.2872 4.2726 40 1 3.8171 3.1331 0.8773 41 1 3.8566 3.1152 -0.9025 42 1 5.9921 2.0083 0.9788 43 1 6.1356 3.4455 -0.0635 44 1 8.5406 -0.7415 -2.6366 45 1 5.8402 -0.1751 -2.1644 46 1 5.8007 -0.3554 -0.3915 47 1 3.5248 -0.5639 -1.2585 48 1 3.6870 0.9749 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162142507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:10 Heat of formation + Delta-G solvation = -58.201884 kcal Electronic energy + Delta-G solvation = -31152.851288 eV Core-core repulsion = 27016.562252 eV Total energy + Delta-G solvation = -4136.289036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.39439 -41.27238 -39.81279 -38.28206 -36.12008 -35.83392 -34.53404 -33.34253 -32.68682 -31.64318 -29.04974 -28.81028 -27.39023 -26.79320 -25.48241 -24.57198 -23.86914 -22.78743 -22.47343 -21.42317 -20.05997 -19.19494 -18.26591 -17.88645 -17.39153 -17.05539 -16.93480 -16.88325 -16.62841 -16.24993 -15.81883 -15.64146 -15.32437 -15.24061 -15.16387 -14.81817 -14.52481 -14.29785 -14.08361 -13.93195 -13.67186 -13.35338 -13.32966 -13.06430 -12.97042 -12.67636 -12.52764 -12.36388 -12.30890 -12.27907 -11.99611 -11.83321 -11.77750 -11.48279 -11.25139 -11.11305 -11.04539 -10.54982 -10.47597 -10.10954 -9.75610 -8.64912 -7.85374 -5.30847 0.08579 1.11963 1.46315 1.47531 1.57567 1.61440 2.20612 2.30342 2.52294 2.83296 3.21945 3.29949 3.66016 3.66883 3.73308 3.83483 3.99098 4.01690 4.25774 4.27371 4.43500 4.47186 4.50012 4.54626 4.58137 4.61277 4.63587 4.68742 4.72809 4.82213 4.88427 4.91540 4.92394 5.04824 5.10918 5.16192 5.22091 5.25264 5.26506 5.37889 5.47717 5.59616 5.65977 5.78021 6.27958 6.39916 6.42442 6.77203 7.16174 7.26121 7.88392 8.40439 9.20944 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.003648 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.838923 B = 7674.214655 C = 8670.332389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.408 6.408 3 C 0.078 3.922 4 C -0.052 4.052 5 C 0.139 3.861 6 N -0.685 5.685 7 C 0.583 3.417 8 O -0.577 6.577 9 C -0.104 4.104 10 N -0.492 5.492 11 C 0.192 3.808 12 O -0.198 6.198 13 C 0.041 3.959 14 C -0.074 4.074 15 C -0.107 4.107 16 C 0.137 3.863 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.267 1.267 26 C 0.185 3.815 27 C -0.109 4.109 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.420 0.580 36 H 0.306 0.694 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.010 0.990 43 H 0.060 0.940 44 H 0.247 0.753 45 H 0.046 0.954 46 H -0.014 1.014 47 H 0.057 0.943 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.469 -6.001 9.112 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.328 6.328 3 C 0.002 3.998 4 C -0.053 4.053 5 C 0.015 3.985 6 N -0.340 5.340 7 C 0.370 3.630 8 O -0.458 6.458 9 C -0.223 4.223 10 N -0.220 5.220 11 C -0.036 4.036 12 O -0.085 6.085 13 C -0.016 4.016 14 C -0.130 4.130 15 C -0.146 4.146 16 C 0.012 3.988 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.088 0.912 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.795 3.205 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.192 1.192 26 C 0.059 3.941 27 C -0.148 4.148 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.264 0.736 36 H 0.321 0.679 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.028 0.972 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.004 0.996 47 H 0.076 0.924 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.984 -5.690 9.093 21.805 hybrid contribution 0.798 -0.327 -0.754 1.146 sum -18.185 -6.017 8.340 20.892 Atomic orbital electron populations 1.22830 0.79467 1.03363 1.00589 1.87576 1.21344 1.28370 1.95483 1.22606 0.91077 0.84676 1.01438 1.20715 0.94254 0.96433 0.93892 1.21340 0.97106 0.82333 0.97728 1.46063 1.49066 1.14064 1.24814 1.17162 0.80126 0.83295 0.82418 1.90720 1.39714 1.77620 1.37787 1.21398 1.06547 0.97739 0.96575 1.70725 1.13693 1.10304 1.27262 1.29185 0.97549 0.93510 0.83364 1.84394 1.49029 1.38430 1.36615 1.24048 0.94643 0.84170 0.98754 1.20628 0.97739 1.05263 0.89401 1.21849 0.95678 0.93929 1.03161 1.21105 0.93782 0.94506 0.89418 1.44282 1.44568 1.15342 1.28909 1.19566 1.10254 0.92590 1.16707 0.91150 1.25826 0.99039 0.96662 1.03293 1.70233 1.41961 1.05618 1.40631 0.85284 0.78536 0.77008 0.79670 1.21231 1.22174 1.19167 1.20376 0.89619 0.86003 0.98076 1.21846 0.96833 0.99336 0.96829 0.93558 0.92982 0.89182 0.91660 0.91663 0.93779 0.91389 0.73581 0.67948 0.87614 0.87589 0.89219 0.89028 0.90726 0.97184 0.92162 0.94373 0.93535 0.99554 0.92445 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -10.52 6.73 -148.98 -1.00 -11.53 16 3 C 0.08 1.94 4.80 71.98 0.35 2.29 16 4 C -0.05 -1.68 0.51 -52.16 -0.03 -1.71 16 5 C 0.14 5.00 3.80 86.38 0.33 5.33 16 6 N -0.68 -24.46 4.62 -466.38 -2.16 -26.62 16 7 C 0.58 21.68 7.81 86.66 0.68 22.36 16 8 O -0.58 -23.73 14.80 -4.06 -0.06 -23.79 16 9 C -0.10 -3.26 6.99 40.41 0.28 -2.98 16 10 N -0.49 -13.25 11.06 -305.16 -3.37 -16.62 16 11 C 0.19 3.34 13.19 130.52 1.72 5.06 16 12 O -0.20 -3.99 10.73 0.38 0.00 -3.99 16 13 C 0.04 1.04 7.44 25.19 0.19 1.23 16 14 C -0.07 -1.52 9.88 71.24 0.70 -0.82 16 15 C -0.11 -3.34 4.91 30.67 0.15 -3.19 16 16 C 0.14 5.69 6.05 86.36 0.52 6.21 16 17 N -0.61 -31.15 3.00 -699.92 -2.10 -33.25 16 18 C -0.26 -14.62 9.58 84.04 0.81 -13.81 16 19 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 20 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 21 N -0.94 -57.99 11.18 21.65 0.24 -57.75 16 22 Si 0.97 45.91 29.59 68.60 2.03 47.94 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 26 C 0.19 9.39 4.81 86.22 0.41 9.80 16 27 C -0.11 -4.27 4.57 30.53 0.14 -4.13 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.49 8.14 -2.38 -0.02 1.48 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.96 4.99 -2.38 -0.01 1.95 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.42 14.52 4.43 -92.71 -0.41 14.11 16 36 H 0.31 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 2.34 6.48 -2.39 -0.02 2.33 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.01 0.45 6.69 -2.39 -0.02 0.43 16 43 H 0.06 2.40 7.93 -2.39 -0.02 2.39 16 44 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 45 H 0.05 2.70 6.05 -2.39 -0.01 2.68 16 46 H -0.01 -0.77 6.70 -2.38 -0.02 -0.78 16 47 H 0.06 2.21 6.49 -2.39 -0.02 2.20 16 48 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -77.66 376.91 2.07 -75.59 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.57 Total: 25.15 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 7.92 Total: 24.86 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -7.39 Total: -134.24 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.06 Total: -39.31 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.66 2.07 -75.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162142507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.388 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds