Wall clock time and date at job start Tue Mar 31 2020 21:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99932 * 2 1 4 4 C 1.52998 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.46491 * 60.02535 * 4 3 2 6 6 N 1.46503 * 109.47076 * 299.97684 * 5 4 3 7 7 C 1.34780 * 120.00187 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99518 * 359.97438 * 7 6 5 9 9 C 1.47415 * 120.00108 * 179.97438 * 7 6 5 10 10 C 1.36088 * 126.45155 * 179.97438 * 9 7 6 11 11 O 1.34258 * 106.95216 * 179.97438 * 10 9 7 12 12 C 1.34052 * 108.22609 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.37667 * 180.02562 * 12 11 10 14 14 N 1.29934 * 109.24358 * 359.72379 * 12 11 10 15 15 C 1.53042 * 109.45895 * 179.97438 * 4 3 2 16 16 C 1.53192 * 109.31216 * 58.64112 * 15 4 3 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 4 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.08997 * 109.47595 * 300.00270 * 1 2 3 29 29 H 1.08996 * 109.47180 * 60.00463 * 1 2 3 30 30 H 1.09008 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47265 * 59.99728 * 3 2 1 32 32 H 1.09003 * 109.46761 * 299.99571 * 3 2 1 33 33 H 1.08997 * 109.47452 * 59.96970 * 5 4 3 34 34 H 1.08996 * 109.47457 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00052 * 359.97438 * 6 5 4 36 36 H 1.08001 * 126.52464 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.46876 * 0.02562 * 13 12 11 38 38 H 1.08996 * 109.46935 * 120.02426 * 13 12 11 39 39 H 1.08999 * 109.46958 * 240.02551 * 13 12 11 40 40 H 1.09002 * 109.49976 * 298.69035 * 15 4 3 41 41 H 1.09002 * 109.49778 * 178.59122 * 15 4 3 42 42 H 1.08997 * 109.58711 * 294.84701 * 16 15 4 43 43 H 1.09004 * 109.70548 * 174.49237 * 16 15 4 44 44 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 46 46 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 47 47 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 48 48 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9862 0.4263 -1.2505 6 7 3.3907 -0.9123 -1.2508 7 6 3.6497 -1.7649 -2.2620 8 8 4.3774 -1.4229 -3.1743 9 6 3.0510 -3.1120 -2.2619 10 6 3.2218 -4.0727 -3.2105 11 8 2.5039 -5.1386 -2.8218 12 6 1.9055 -4.8400 -1.6600 13 6 1.0052 -5.7630 -0.8798 14 7 2.2293 -3.6314 -1.3097 15 6 4.1575 2.5830 -0.0013 16 6 3.6766 3.3520 1.2333 17 7 3.9781 2.5580 2.4322 18 6 4.6878 3.1022 3.4691 19 1 5.3932 3.8983 3.2818 20 6 4.4964 2.6346 4.7621 21 7 3.4276 1.9239 5.0533 22 14 5.7558 3.0139 6.0885 23 1 5.3970 4.2879 6.7619 24 1 5.7708 1.9139 7.0859 25 1 7.1008 3.1416 5.4721 26 6 3.5088 1.1671 2.4947 27 6 3.9868 0.4243 1.2484 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.6637 0.9674 -2.1400 34 1 5.0728 0.3406 -1.2514 35 1 2.8106 -1.1852 -0.5228 36 1 3.8215 -3.9933 -4.1051 37 1 0.9153 -6.7133 -1.4060 38 1 1.4299 -5.9341 0.1094 39 1 0.0195 -5.3090 -0.7785 40 1 3.8543 3.1157 -0.9026 41 1 5.2439 2.4978 0.0235 42 1 2.6014 3.5170 1.1651 43 1 4.1905 4.3116 1.2918 44 1 3.2940 1.5968 5.9568 45 1 3.9140 0.6844 3.3840 46 1 2.4195 1.1503 2.5315 47 1 3.5622 -0.5795 1.2365 48 1 5.0748 0.3590 1.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162230452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:23 Heat of formation + Delta-G solvation = -34.581052 kcal Electronic energy + Delta-G solvation = -30769.387472 eV Core-core repulsion = 26634.122712 eV Total energy + Delta-G solvation = -4135.264760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.56272 -39.91279 -38.63196 -36.67697 -35.04945 -34.77808 -32.98206 -32.38970 -30.77313 -29.95387 -28.13598 -27.34571 -26.92949 -25.11148 -24.38554 -23.32391 -22.26199 -21.66284 -20.75723 -20.27668 -18.52842 -17.98016 -17.07855 -16.76745 -16.47259 -15.97394 -15.71518 -15.62161 -14.94910 -14.78360 -14.48979 -14.41555 -14.06549 -13.79897 -13.49870 -13.44941 -13.42853 -13.20865 -13.15118 -12.84066 -12.51553 -12.27440 -11.96694 -11.56106 -11.34333 -11.30083 -11.18499 -10.93691 -10.91183 -10.69366 -10.51923 -10.24676 -10.15259 -10.04591 -9.87677 -9.54247 -9.40132 -9.27510 -9.17993 -8.69959 -8.42564 -6.64549 -5.77470 -3.19458 0.99563 1.91518 2.40193 3.25338 3.38205 3.38756 3.45593 3.48159 3.72581 4.03541 4.51022 4.61675 4.83382 5.01787 5.04759 5.07559 5.16121 5.25499 5.35534 5.42202 5.45520 5.48103 5.53268 5.55096 5.58591 5.68547 5.78690 5.84034 5.88104 5.95629 5.98358 6.08581 6.17135 6.30790 6.44569 6.63693 6.69329 6.70873 6.76788 6.86396 6.93258 7.31259 7.37118 7.44131 7.70959 7.81438 7.90626 8.42013 8.46498 9.22988 9.86417 10.42726 11.30821 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.003045 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.222616 B = 9192.757145 C = 9640.841891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.389 6.389 3 C 0.069 3.931 4 C -0.058 4.058 5 C 0.131 3.869 6 N -0.687 5.687 7 C 0.592 3.408 8 O -0.554 6.554 9 C -0.061 4.061 10 C 0.002 3.998 11 O -0.200 6.200 12 C 0.191 3.809 13 C -0.057 4.057 14 N -0.453 5.453 15 C -0.120 4.120 16 C 0.144 3.856 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.173 3.827 27 C -0.126 4.126 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.423 0.577 36 H 0.229 0.771 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.018 0.982 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.020 0.980 47 H 0.056 0.944 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 -12.468 -14.541 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.308 6.308 3 C -0.007 4.007 4 C -0.058 4.058 5 C 0.008 3.992 6 N -0.343 5.343 7 C 0.376 3.624 8 O -0.434 6.434 9 C -0.182 4.182 10 C -0.072 4.072 11 O -0.087 6.087 12 C -0.018 4.018 13 C -0.114 4.114 14 N -0.184 5.184 15 C -0.160 4.160 16 C 0.018 3.982 17 N -0.314 5.314 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.048 3.952 27 C -0.166 4.166 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.267 0.733 36 H 0.245 0.755 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.038 0.962 47 H 0.074 0.926 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.319 -12.145 -14.397 19.867 hybrid contribution 0.385 0.014 0.360 0.527 sum -5.933 -12.131 -14.037 19.478 Atomic orbital electron populations 1.22639 0.81369 1.02212 0.99619 1.87523 1.19367 1.28563 1.95332 1.22766 0.93089 0.84267 1.00598 1.20783 0.93152 0.96783 0.95122 1.21498 0.97912 0.81991 0.97843 1.46180 1.49181 1.14016 1.24911 1.16804 0.80513 0.82325 0.82743 1.90789 1.38700 1.77103 1.36777 1.21898 1.03614 0.98086 0.94552 1.25225 0.96845 0.83977 1.01161 1.84379 1.49220 1.39408 1.35664 1.26383 0.97894 0.93150 0.84373 1.20297 0.96623 0.96090 0.98426 1.70834 1.13170 1.07610 1.26749 1.21998 1.00897 0.93652 0.99452 1.20920 0.96731 0.93955 0.86615 1.44050 1.64060 1.07856 1.15476 1.19164 1.14938 1.18448 0.85642 0.91764 1.25023 0.96721 1.00820 0.97016 1.70034 1.25203 1.40122 1.19231 0.86330 0.81512 0.77415 0.81711 1.21479 1.21594 1.20508 1.20681 0.96004 0.84004 0.94531 1.22120 1.00481 0.98265 0.95705 0.93918 0.94854 0.90059 0.91183 0.94176 0.91975 0.91422 0.73343 0.75469 0.89353 0.88185 0.88299 0.92648 0.91205 0.96468 0.92580 0.93703 0.89587 0.96188 0.92578 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 11.01 101.05 1.11 1.59 16 2 O -0.39 -5.99 6.77 -35.23 -0.24 -6.23 16 3 C 0.07 1.09 4.04 37.16 0.15 1.25 16 4 C -0.06 -0.96 0.51 -154.47 -0.08 -1.03 16 5 C 0.13 2.07 4.56 -4.04 -0.02 2.05 16 6 N -0.69 -11.00 4.60 -61.39 -0.28 -11.28 16 7 C 0.59 9.61 7.81 -12.52 -0.10 9.51 16 8 O -0.55 -10.02 16.89 5.27 0.09 -9.94 16 9 C -0.06 -0.86 6.99 -83.02 -0.58 -1.44 16 10 C 0.00 0.02 11.95 29.96 0.36 0.38 16 11 O -0.20 -2.08 10.73 6.50 0.07 -2.01 16 12 C 0.19 1.99 8.30 -13.08 -0.11 1.88 16 13 C -0.06 -0.32 10.51 36.01 0.38 0.06 16 14 N -0.45 -6.11 11.06 -7.65 -0.08 -6.19 16 15 C -0.12 -1.99 4.90 -26.61 -0.13 -2.12 16 16 C 0.14 2.88 6.05 -3.71 -0.02 2.86 16 17 N -0.59 -14.38 3.00 -172.58 -0.52 -14.90 16 18 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.86 11.18 55.49 0.62 -25.24 16 22 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.17 4.05 4.81 -3.93 -0.02 4.03 16 27 C -0.13 -2.43 4.58 -26.83 -0.12 -2.56 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.07 1.26 4.99 -51.93 -0.26 1.00 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.42 6.92 4.42 -40.82 -0.18 6.74 16 36 H 0.23 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.35 6.69 -51.93 -0.35 0.00 16 43 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.09 2.30 6.05 -51.93 -0.31 1.99 16 46 H 0.02 0.49 6.70 -51.93 -0.35 0.14 16 47 H 0.06 1.05 6.49 -51.93 -0.34 0.72 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -32.62 380.91 -6.29 -38.91 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.24 Total: 5.12 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 0.59 Total: 9.46 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.26 Total: -57.62 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.08 Total: -18.18 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.62 -6.29 -38.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162230452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.325 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds