Wall clock time and date at job start Tue Mar 31 2020 21:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99932 * 2 1 4 4 C 1.52998 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.46491 * 60.02535 * 4 3 2 6 6 N 1.46503 * 109.47076 * 299.97684 * 5 4 3 7 7 C 1.34780 * 120.00187 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99518 * 359.97438 * 7 6 5 9 9 C 1.47415 * 120.00108 * 179.97438 * 7 6 5 10 10 C 1.36088 * 126.45155 * 179.97438 * 9 7 6 11 11 O 1.34258 * 106.95216 * 179.97438 * 10 9 7 12 12 C 1.34052 * 108.22609 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.37667 * 180.02562 * 12 11 10 14 14 N 1.29934 * 109.24358 * 359.72379 * 12 11 10 15 15 C 1.53042 * 109.45895 * 179.97438 * 4 3 2 16 16 C 1.53192 * 109.31216 * 58.64112 * 15 4 3 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 4 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.08997 * 109.47595 * 300.00270 * 1 2 3 29 29 H 1.08996 * 109.47180 * 60.00463 * 1 2 3 30 30 H 1.09008 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47265 * 59.99728 * 3 2 1 32 32 H 1.09003 * 109.46761 * 299.99571 * 3 2 1 33 33 H 1.08997 * 109.47452 * 59.96970 * 5 4 3 34 34 H 1.08996 * 109.47457 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00052 * 359.97438 * 6 5 4 36 36 H 1.08001 * 126.52464 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.46876 * 0.02562 * 13 12 11 38 38 H 1.08996 * 109.46935 * 120.02426 * 13 12 11 39 39 H 1.08999 * 109.46958 * 240.02551 * 13 12 11 40 40 H 1.09002 * 109.49976 * 298.69035 * 15 4 3 41 41 H 1.09002 * 109.49778 * 178.59122 * 15 4 3 42 42 H 1.08997 * 109.58711 * 294.84701 * 16 15 4 43 43 H 1.09004 * 109.70548 * 174.49237 * 16 15 4 44 44 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 46 46 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 47 47 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 48 48 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9862 0.4263 -1.2505 6 7 3.3907 -0.9123 -1.2508 7 6 3.6497 -1.7649 -2.2620 8 8 4.3774 -1.4229 -3.1743 9 6 3.0510 -3.1120 -2.2619 10 6 3.2218 -4.0727 -3.2105 11 8 2.5039 -5.1386 -2.8218 12 6 1.9055 -4.8400 -1.6600 13 6 1.0052 -5.7630 -0.8798 14 7 2.2293 -3.6314 -1.3097 15 6 4.1575 2.5830 -0.0013 16 6 3.6766 3.3520 1.2333 17 7 3.9781 2.5580 2.4322 18 6 4.6878 3.1022 3.4691 19 1 5.3932 3.8983 3.2818 20 6 4.4964 2.6346 4.7621 21 7 3.4276 1.9239 5.0533 22 14 5.7558 3.0139 6.0885 23 1 5.3970 4.2879 6.7619 24 1 5.7708 1.9139 7.0859 25 1 7.1008 3.1416 5.4721 26 6 3.5088 1.1671 2.4947 27 6 3.9868 0.4243 1.2484 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.6637 0.9674 -2.1400 34 1 5.0728 0.3406 -1.2514 35 1 2.8106 -1.1852 -0.5228 36 1 3.8215 -3.9933 -4.1051 37 1 0.9153 -6.7133 -1.4060 38 1 1.4299 -5.9341 0.1094 39 1 0.0195 -5.3090 -0.7785 40 1 3.8543 3.1157 -0.9026 41 1 5.2439 2.4978 0.0235 42 1 2.6014 3.5170 1.1651 43 1 4.1905 4.3116 1.2918 44 1 3.2940 1.5968 5.9568 45 1 3.9140 0.6844 3.3840 46 1 2.4195 1.1503 2.5315 47 1 3.5622 -0.5795 1.2365 48 1 5.0748 0.3590 1.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162230452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:22 Heat of formation + Delta-G solvation = -58.479753 kcal Electronic energy + Delta-G solvation = -30770.423797 eV Core-core repulsion = 26634.122712 eV Total energy + Delta-G solvation = -4136.301085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.41304 -41.25421 -39.95559 -38.04959 -36.31055 -35.92888 -34.58170 -33.14469 -32.51770 -31.64810 -29.04708 -28.66628 -28.15862 -26.37824 -25.93770 -24.61127 -23.85802 -22.68736 -22.18808 -21.41911 -19.94442 -19.24023 -18.40838 -17.91994 -17.58378 -17.20624 -16.93290 -16.85116 -16.76596 -16.13610 -15.81339 -15.49615 -15.33955 -15.20457 -14.84618 -14.78488 -14.57435 -14.49974 -14.03454 -13.89109 -13.77694 -13.41787 -13.26287 -13.17597 -12.97710 -12.60935 -12.54859 -12.38446 -12.28222 -12.22970 -11.97433 -11.82995 -11.81744 -11.46871 -11.40643 -11.11072 -11.09513 -10.55743 -10.44152 -10.15331 -9.85336 -8.63477 -7.85166 -5.29373 0.09451 0.99961 1.46241 1.48540 1.57629 1.62721 2.13677 2.26128 2.52467 2.78175 3.02417 3.29765 3.67977 3.73652 3.75450 3.83115 3.92834 3.99712 4.27966 4.42653 4.43747 4.48974 4.52799 4.56718 4.60363 4.61038 4.67859 4.69272 4.70359 4.77293 4.78544 4.86784 4.90736 4.93085 5.06107 5.15676 5.21690 5.24943 5.27328 5.38462 5.46839 5.55334 5.67012 5.79810 6.23917 6.40737 6.42072 6.73019 7.17656 7.18725 7.89608 8.40622 9.20855 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.003045 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.222616 B = 9192.757145 C = 9640.841891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.402 6.402 3 C 0.077 3.923 4 C -0.050 4.050 5 C 0.139 3.861 6 N -0.689 5.689 7 C 0.590 3.410 8 O -0.579 6.579 9 C -0.099 4.099 10 C 0.023 3.977 11 O -0.196 6.196 12 C 0.199 3.801 13 C -0.057 4.057 14 N -0.488 5.488 15 C -0.110 4.110 16 C 0.141 3.859 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.066 0.934 20 C -0.050 4.050 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.187 3.813 27 C -0.111 4.111 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.421 0.579 36 H 0.255 0.745 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.248 0.752 45 H 0.046 0.954 46 H 0.002 0.998 47 H 0.057 0.943 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -13.309 -16.389 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.321 6.321 3 C 0.000 4.000 4 C -0.051 4.051 5 C 0.015 3.985 6 N -0.344 5.344 7 C 0.376 3.624 8 O -0.461 6.461 9 C -0.218 4.218 10 C -0.052 4.052 11 O -0.082 6.082 12 C -0.011 4.011 13 C -0.114 4.114 14 N -0.218 5.218 15 C -0.149 4.149 16 C 0.015 3.985 17 N -0.333 5.333 18 C -0.391 4.391 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.791 3.209 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.062 3.938 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.264 0.736 36 H 0.271 0.729 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.020 0.980 47 H 0.076 0.924 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.613 -12.968 -16.263 21.826 hybrid contribution 0.396 0.221 0.911 1.018 sum -6.217 -12.747 -15.353 20.900 Atomic orbital electron populations 1.22793 0.79840 1.03387 1.00103 1.87506 1.21029 1.28171 1.95402 1.22608 0.92383 0.84612 1.00367 1.20673 0.93887 0.96504 0.93988 1.21381 0.97573 0.82113 0.97444 1.46191 1.49143 1.14115 1.24958 1.17077 0.80051 0.83073 0.82163 1.90759 1.39889 1.77870 1.37556 1.21753 1.05694 0.97950 0.96400 1.25700 0.95544 0.83088 1.00837 1.84428 1.49040 1.38990 1.35749 1.27296 0.96969 0.92792 0.84012 1.20592 0.96108 0.96374 0.98353 1.70796 1.14344 1.09199 1.27509 1.21883 1.00586 0.93392 0.99087 1.21086 0.97056 0.94075 0.86258 1.44288 1.64095 1.08604 1.16282 1.19502 1.14970 1.18130 0.86547 0.91584 1.25745 0.98371 1.01367 0.99062 1.70185 1.26857 1.41571 1.19242 0.85348 0.79565 0.76903 0.79059 1.21118 1.22074 1.19731 1.20370 0.94551 0.84132 0.94779 1.21866 0.99564 0.98200 0.95364 0.94488 0.93230 0.88626 0.93703 0.91943 0.90738 0.91958 0.73565 0.72880 0.86760 0.87485 0.87073 0.88982 0.91553 0.96115 0.92409 0.94274 0.93569 0.98040 0.92432 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -12.09 6.77 -148.98 -1.01 -13.09 16 3 C 0.08 2.35 4.04 71.98 0.29 2.64 16 4 C -0.05 -1.60 0.51 -52.16 -0.03 -1.63 16 5 C 0.14 4.19 4.56 86.38 0.39 4.58 16 6 N -0.69 -21.57 4.60 -466.39 -2.15 -23.72 16 7 C 0.59 18.75 7.81 86.66 0.68 19.43 16 8 O -0.58 -20.46 16.89 -4.07 -0.07 -20.53 16 9 C -0.10 -2.70 6.99 40.40 0.28 -2.41 16 10 C 0.02 0.46 11.95 67.32 0.80 1.26 16 11 O -0.20 -3.62 10.73 0.35 0.00 -3.62 16 12 C 0.20 3.75 8.30 88.39 0.73 4.49 16 13 C -0.06 -0.50 10.51 71.24 0.75 0.25 16 14 N -0.49 -12.67 11.06 -293.03 -3.24 -15.91 16 15 C -0.11 -3.47 4.90 30.67 0.15 -3.32 16 16 C 0.14 5.53 6.05 86.36 0.52 6.06 16 17 N -0.61 -30.14 3.00 -699.92 -2.10 -32.24 16 18 C -0.26 -14.33 9.58 84.04 0.81 -13.53 16 19 H 0.07 3.53 7.88 -2.91 -0.02 3.50 16 20 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 21 N -0.93 -55.32 11.18 21.65 0.24 -55.08 16 22 Si 0.96 45.22 29.59 68.60 2.03 47.25 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 26 C 0.19 9.07 4.81 86.22 0.41 9.49 16 27 C -0.11 -4.34 4.58 30.53 0.14 -4.20 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.04 1.61 4.99 -2.39 -0.01 1.60 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.42 13.63 4.42 -92.71 -0.41 13.22 16 36 H 0.26 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.02 0.82 6.69 -2.39 -0.02 0.80 16 43 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 44 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 45 H 0.05 2.59 6.05 -2.39 -0.01 2.58 16 46 H 0.00 0.08 6.70 -2.38 -0.02 0.07 16 47 H 0.06 2.22 6.49 -2.39 -0.02 2.20 16 48 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -72.38 380.91 1.88 -70.50 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.57 Total: 23.64 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.60 Total: 22.81 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -7.24 Total: -126.95 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.07 Total: -37.24 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.38 1.88 -70.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162230452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.016 kcal (2) G-P(sol) polarization free energy of solvation -72.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds