Wall clock time and date at job start Tue Mar 31 2020 19:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34333 * 126.44526 * 2 1 4 4 N 1.34475 * 107.66873 * 179.77267 * 3 2 1 5 5 C 1.30253 * 108.70002 * 0.42030 * 4 3 2 6 6 C 1.50703 * 125.61548 * 179.84426 * 5 4 3 7 7 O 1.42899 * 109.47389 * 89.69296 * 6 5 4 8 8 C 1.42894 * 114.00103 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47387 * 179.97438 * 8 7 6 10 10 O 1.21276 * 119.99627 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99946 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99448 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46978 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47443 * 175.45413 * 13 12 11 15 15 C 1.52994 * 115.55203 * 279.32699 * 14 13 12 16 16 N 1.46502 * 109.47083 * 294.94915 * 15 14 13 17 17 C 1.36941 * 120.00230 * 174.37457 * 16 15 14 18 18 H 1.08004 * 119.99691 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99812 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00235 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46707 * 59.99718 * 21 19 17 23 23 H 1.48493 * 109.47030 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47124 * 299.99867 * 21 19 17 25 25 C 1.53007 * 117.49903 * 133.61229 * 14 13 12 26 26 C 1.52999 * 59.99972 * 252.51270 * 25 14 13 27 27 O 1.33963 * 108.76525 * 359.57537 * 5 4 3 28 28 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46655 * 299.99754 * 1 2 3 30 30 H 1.09001 * 109.47176 * 59.99370 * 1 2 3 31 31 H 1.08002 * 126.16118 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47348 * 329.69090 * 6 5 4 33 33 H 1.08995 * 109.46811 * 209.69279 * 6 5 4 34 34 H 1.09001 * 109.47355 * 60.00245 * 8 7 6 35 35 H 1.08998 * 109.47262 * 300.00373 * 8 7 6 36 36 H 0.96999 * 120.00300 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.47213 * 299.99904 * 12 11 9 38 38 H 1.08997 * 109.47205 * 60.00430 * 12 11 9 39 39 H 1.09003 * 109.46928 * 295.45690 * 13 12 11 40 40 H 1.09001 * 109.47093 * 55.45466 * 13 12 11 41 41 H 1.08998 * 109.47168 * 54.94880 * 15 14 13 42 42 H 1.08997 * 109.47202 * 174.94846 * 15 14 13 43 43 H 0.97006 * 119.99863 * 354.37036 * 16 15 14 44 44 H 0.97007 * 119.99878 * 180.02562 * 20 19 17 45 45 H 1.09001 * 117.49948 * 0.02562 * 25 14 13 46 46 H 1.09004 * 117.49605 * 145.02136 * 25 14 13 47 47 H 1.08994 * 117.49813 * 252.50261 * 26 25 14 48 48 H 1.09003 * 117.49585 * 107.48997 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5765 -0.6547 -0.0009 6 6 4.8005 -1.5340 -0.0015 7 8 5.1878 -1.8122 1.3456 8 6 6.3444 -2.6438 1.4578 9 6 6.6609 -2.8703 2.9138 10 8 5.9642 -2.3694 3.7708 11 7 7.7175 -3.6305 3.2633 12 6 8.0248 -3.8511 4.6786 13 6 9.2633 -4.7414 4.7988 14 6 9.6513 -4.8792 6.2724 15 6 10.4460 -3.7102 6.8577 16 7 11.7500 -3.6259 6.1951 17 6 12.5930 -2.5831 6.4729 18 1 12.2963 -1.8226 7.1801 19 6 13.8282 -2.5029 5.8447 20 7 14.1894 -3.4295 4.9825 21 14 14.9779 -1.0800 6.2231 22 1 15.3108 -1.0841 7.6703 23 1 16.2238 -1.2256 5.4285 24 1 14.3130 0.2005 5.8717 25 6 9.9736 -6.2826 6.7897 26 6 8.6674 -5.5982 7.1976 27 8 2.3075 -1.0840 -0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.9822 2.1112 0.0004 32 1 5.6147 -1.0230 -0.5155 33 1 4.5761 -2.4686 -0.5154 34 1 7.1908 -2.1562 0.9741 35 1 6.1517 -3.6014 0.9742 36 1 8.2745 -4.0314 2.5778 37 1 8.2179 -2.8934 5.1621 38 1 7.1784 -4.3384 5.1625 39 1 9.0439 -5.7265 4.3871 40 1 10.0886 -4.2923 4.2463 41 1 9.8971 -2.7820 6.6989 42 1 10.5910 -3.8683 7.9263 43 1 12.0162 -4.3088 5.5597 44 1 15.0528 -3.3736 4.5438 45 1 9.9096 -7.1076 6.0802 46 1 10.7522 -6.3733 7.5472 47 1 8.5867 -5.2387 8.2234 48 1 7.7438 -5.9729 6.7565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166107178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:13 Heat of formation + Delta-G solvation = -21.099148 kcal Electronic energy + Delta-G solvation = -27717.616362 eV Core-core repulsion = 23582.936222 eV Total energy + Delta-G solvation = -4134.680140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.68132 -39.88498 -38.42939 -37.81549 -35.08493 -34.82295 -33.90465 -33.15673 -30.86443 -30.68654 -29.65222 -27.52451 -25.91875 -25.48096 -23.29236 -22.73538 -22.68160 -21.76474 -21.47177 -20.73051 -18.63629 -17.86351 -17.57234 -17.07936 -16.90574 -16.63551 -16.59028 -15.64172 -15.43445 -15.08488 -14.97901 -14.70139 -14.40708 -14.12170 -13.90834 -13.57609 -13.46728 -13.42746 -13.09380 -12.84211 -12.72150 -12.49393 -12.34384 -12.21252 -11.90455 -11.65522 -11.44670 -11.12671 -10.95472 -10.87446 -10.81338 -10.59885 -10.25779 -10.17043 -9.90501 -9.86258 -9.63683 -9.32179 -9.10105 -9.03981 -8.83484 -6.89232 -5.75217 -3.02917 0.93829 2.03028 2.31100 2.56279 2.81066 3.45708 3.49844 3.50150 3.51024 3.99824 4.07487 4.30969 4.49379 4.57053 4.62503 4.63297 4.71659 4.77736 4.87263 4.92022 4.99882 5.02030 5.09471 5.12741 5.15772 5.31979 5.46045 5.53138 5.59660 5.66011 5.67825 5.75988 5.91228 5.91874 6.16026 6.18913 6.23175 6.37383 6.43588 6.46507 6.49111 6.57482 6.77557 6.85538 7.36172 7.45014 7.71719 8.18118 8.44073 9.55726 10.13860 10.49817 11.47520 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.001826 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.477883 B =15327.715726 C =16738.260331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.040 4.040 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.187 3.813 6 C 0.161 3.839 7 O -0.357 6.357 8 C 0.045 3.955 9 C 0.512 3.488 10 O -0.520 6.520 11 N -0.725 5.725 12 C 0.126 3.874 13 C -0.091 4.091 14 C -0.120 4.120 15 C 0.187 3.813 16 N -0.727 5.727 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.164 4.164 26 C -0.178 4.178 27 O -0.195 6.195 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.186 0.814 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.017 0.983 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.144 -1.467 -13.445 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.187 5.187 5 C -0.020 4.020 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.035 4.035 9 C 0.296 3.704 10 O -0.394 6.394 11 N -0.378 5.378 12 C 0.004 3.996 13 C -0.128 4.128 14 C -0.121 4.121 15 C 0.060 3.940 16 N -0.371 5.371 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.201 4.201 26 C -0.215 4.215 27 O -0.081 6.081 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.203 0.797 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.135 -0.573 -12.566 28.107 hybrid contribution 0.640 -0.047 -0.517 0.824 sum -24.495 -0.620 -13.082 27.777 Atomic orbital electron populations 1.20318 0.83717 1.04535 1.04069 1.23586 0.95195 0.84521 1.06022 1.23127 0.87574 1.00594 1.07085 1.70428 1.23317 1.09055 1.15902 1.25509 0.83856 0.89959 1.02635 1.20486 0.89135 0.96444 0.85567 1.88076 1.45600 1.69799 1.23936 1.22280 0.89616 0.95969 0.95605 1.20064 0.81027 0.79081 0.90209 1.90754 1.49007 1.48040 1.51644 1.45897 1.30124 1.52218 1.09564 1.21385 0.97302 1.00799 0.80145 1.21255 0.97225 0.99089 0.95271 1.21569 1.01934 0.94918 0.93656 1.20184 0.86663 0.92877 0.94303 1.42281 1.14072 1.29412 1.51357 1.19201 0.96348 1.01470 1.19889 0.91317 1.24704 0.97973 0.98660 0.99595 1.69649 1.22004 1.35033 1.31605 0.86283 0.80375 0.82106 0.77534 1.21321 1.21729 1.21288 1.22966 0.98685 0.94927 1.03564 1.22978 0.93667 1.04776 1.00107 1.84390 1.17719 1.36632 1.69369 0.90235 0.89023 0.89163 0.79664 0.88257 0.89865 0.89304 0.89680 0.76447 0.90820 0.91662 0.91912 0.89354 0.95525 0.96555 0.78169 0.93567 0.89319 0.88593 0.88928 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.43 36.01 0.38 0.07 16 2 C -0.04 -0.36 7.39 -35.69 -0.26 -0.62 16 3 C -0.04 -0.44 11.80 -17.77 -0.21 -0.65 16 4 N -0.46 -5.80 11.29 -11.10 -0.13 -5.93 16 5 C 0.19 2.16 7.97 -12.95 -0.10 2.06 16 6 C 0.16 1.40 6.56 36.01 0.24 1.63 16 7 O -0.36 -4.37 9.86 -55.14 -0.54 -4.91 16 8 C 0.05 0.41 6.42 36.01 0.23 0.65 16 9 C 0.51 6.90 7.91 -10.98 -0.09 6.82 16 10 O -0.52 -9.69 16.50 -14.35 -0.24 -9.93 16 11 N -0.72 -8.51 5.56 -60.29 -0.33 -8.85 16 12 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 13 C -0.09 -1.27 5.24 -26.73 -0.14 -1.41 16 14 C -0.12 -1.89 1.52 -154.51 -0.23 -2.13 16 15 C 0.19 3.79 6.10 -4.04 -0.02 3.76 16 16 N -0.73 -18.11 5.30 -59.91 -0.32 -18.42 16 17 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 21 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C -0.16 -2.39 9.90 -26.73 -0.26 -2.65 16 26 C -0.18 -2.37 9.57 -26.73 -0.26 -2.62 16 27 O -0.19 -2.17 10.78 5.36 0.06 -2.11 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.19 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 37 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 38 H 0.07 0.90 7.80 -51.93 -0.41 0.49 16 39 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 40 H 0.09 1.44 7.64 -51.93 -0.40 1.05 16 41 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16 42 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 43 H 0.38 9.98 7.46 -40.82 -0.30 9.67 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 46 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 47 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.09 1.05 7.98 -51.93 -0.41 0.64 16 LS Contribution 411.33 15.07 6.20 6.20 Total: -1.00 -37.89 411.33 -8.30 -46.19 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.69 Total: 8.05 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.01 Total: -0.65 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.05 Total: -60.34 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.72 Total: -16.95 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.89 -8.30 -46.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166107178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.091 kcal (2) G-P(sol) polarization free energy of solvation -37.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds