Wall clock time and date at job start Tue Mar 31 2020 19:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34333 * 126.44526 * 2 1 4 4 N 1.34475 * 107.66873 * 179.77267 * 3 2 1 5 5 C 1.30253 * 108.70002 * 0.42030 * 4 3 2 6 6 C 1.50703 * 125.61548 * 179.84426 * 5 4 3 7 7 O 1.42899 * 109.47389 * 89.69296 * 6 5 4 8 8 C 1.42894 * 114.00103 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47387 * 179.97438 * 8 7 6 10 10 O 1.21276 * 119.99627 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99946 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99448 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46978 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47443 * 175.45413 * 13 12 11 15 15 C 1.52994 * 115.55203 * 279.32699 * 14 13 12 16 16 N 1.46502 * 109.47083 * 294.94915 * 15 14 13 17 17 C 1.36941 * 120.00230 * 174.37457 * 16 15 14 18 18 H 1.08004 * 119.99691 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99812 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00235 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46707 * 59.99718 * 21 19 17 23 23 H 1.48493 * 109.47030 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47124 * 299.99867 * 21 19 17 25 25 C 1.53007 * 117.49903 * 133.61229 * 14 13 12 26 26 C 1.52999 * 59.99972 * 252.51270 * 25 14 13 27 27 O 1.33963 * 108.76525 * 359.57537 * 5 4 3 28 28 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46655 * 299.99754 * 1 2 3 30 30 H 1.09001 * 109.47176 * 59.99370 * 1 2 3 31 31 H 1.08002 * 126.16118 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47348 * 329.69090 * 6 5 4 33 33 H 1.08995 * 109.46811 * 209.69279 * 6 5 4 34 34 H 1.09001 * 109.47355 * 60.00245 * 8 7 6 35 35 H 1.08998 * 109.47262 * 300.00373 * 8 7 6 36 36 H 0.96999 * 120.00300 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.47213 * 299.99904 * 12 11 9 38 38 H 1.08997 * 109.47205 * 60.00430 * 12 11 9 39 39 H 1.09003 * 109.46928 * 295.45690 * 13 12 11 40 40 H 1.09001 * 109.47093 * 55.45466 * 13 12 11 41 41 H 1.08998 * 109.47168 * 54.94880 * 15 14 13 42 42 H 1.08997 * 109.47202 * 174.94846 * 15 14 13 43 43 H 0.97006 * 119.99863 * 354.37036 * 16 15 14 44 44 H 0.97007 * 119.99878 * 180.02562 * 20 19 17 45 45 H 1.09001 * 117.49948 * 0.02562 * 25 14 13 46 46 H 1.09004 * 117.49605 * 145.02136 * 25 14 13 47 47 H 1.08994 * 117.49813 * 252.50261 * 26 25 14 48 48 H 1.09003 * 117.49585 * 107.48997 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5765 -0.6547 -0.0009 6 6 4.8005 -1.5340 -0.0015 7 8 5.1878 -1.8122 1.3456 8 6 6.3444 -2.6438 1.4578 9 6 6.6609 -2.8703 2.9138 10 8 5.9642 -2.3694 3.7708 11 7 7.7175 -3.6305 3.2633 12 6 8.0248 -3.8511 4.6786 13 6 9.2633 -4.7414 4.7988 14 6 9.6513 -4.8792 6.2724 15 6 10.4460 -3.7102 6.8577 16 7 11.7500 -3.6259 6.1951 17 6 12.5930 -2.5831 6.4729 18 1 12.2963 -1.8226 7.1801 19 6 13.8282 -2.5029 5.8447 20 7 14.1894 -3.4295 4.9825 21 14 14.9779 -1.0800 6.2231 22 1 15.3108 -1.0841 7.6703 23 1 16.2238 -1.2256 5.4285 24 1 14.3130 0.2005 5.8717 25 6 9.9736 -6.2826 6.7897 26 6 8.6674 -5.5982 7.1976 27 8 2.3075 -1.0840 -0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.9822 2.1112 0.0004 32 1 5.6147 -1.0230 -0.5155 33 1 4.5761 -2.4686 -0.5154 34 1 7.1908 -2.1562 0.9741 35 1 6.1517 -3.6014 0.9742 36 1 8.2745 -4.0314 2.5778 37 1 8.2179 -2.8934 5.1621 38 1 7.1784 -4.3384 5.1625 39 1 9.0439 -5.7265 4.3871 40 1 10.0886 -4.2923 4.2463 41 1 9.8971 -2.7820 6.6989 42 1 10.5910 -3.8683 7.9263 43 1 12.0162 -4.3088 5.5597 44 1 15.0528 -3.3736 4.5438 45 1 9.9096 -7.1076 6.0802 46 1 10.7522 -6.3733 7.5472 47 1 8.5867 -5.2387 8.2234 48 1 7.7438 -5.9729 6.7565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166107178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:12 Heat of formation + Delta-G solvation = -50.336416 kcal Electronic energy + Delta-G solvation = -27718.884185 eV Core-core repulsion = 23582.936222 eV Total energy + Delta-G solvation = -4135.947963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.41437 -40.91470 -39.60439 -38.71932 -36.11172 -35.86369 -35.71500 -33.73790 -32.77513 -31.76679 -30.38109 -28.38420 -27.67866 -26.13028 -24.65008 -24.39562 -23.40345 -22.95200 -22.20170 -21.77019 -20.00698 -19.06090 -18.64220 -18.35471 -17.76882 -17.47190 -17.38618 -16.79630 -16.57431 -16.42183 -15.97079 -15.85059 -15.58441 -15.31929 -15.02514 -14.82296 -14.61348 -14.20122 -14.16905 -13.89059 -13.83051 -13.32399 -13.22095 -13.15972 -13.05444 -12.98486 -12.76658 -12.55494 -12.47279 -12.27602 -12.17734 -11.92364 -11.83116 -11.65597 -11.09703 -10.98222 -10.92043 -10.87314 -10.55768 -10.12797 -9.77820 -8.96843 -7.94319 -5.21660 0.21865 1.33399 1.46630 1.48819 1.54933 1.55245 1.62216 1.95163 2.54440 2.80402 2.91126 3.30040 3.38343 3.69122 3.76646 3.84662 3.86600 3.98470 3.99498 4.07269 4.09915 4.18480 4.22394 4.26581 4.29463 4.42736 4.46458 4.49738 4.61078 4.65641 4.67139 4.84602 4.94122 4.97885 4.98028 5.08828 5.13390 5.18520 5.24557 5.28335 5.34757 5.39150 5.41579 5.49128 5.81320 6.28105 6.53681 6.61649 7.21417 7.35555 8.11244 8.38134 9.28407 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.001826 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.477883 B =15327.715726 C =16738.260331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.038 4.038 3 C -0.069 4.069 4 N -0.493 5.493 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.398 6.398 8 C 0.049 3.951 9 C 0.504 3.496 10 O -0.582 6.582 11 N -0.712 5.712 12 C 0.134 3.866 13 C -0.076 4.076 14 C -0.141 4.141 15 C 0.187 3.813 16 N -0.734 5.734 17 C -0.249 4.249 18 H 0.068 0.932 19 C -0.069 4.069 20 N -0.963 5.963 21 Si 0.968 3.032 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.162 4.162 26 C -0.153 4.153 27 O -0.208 6.208 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.209 0.791 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.419 0.581 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.378 0.622 44 H 0.252 0.748 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.415 -2.468 -14.632 30.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 C -0.208 4.208 4 N -0.224 5.224 5 C -0.041 4.041 6 C 0.083 3.917 7 O -0.317 6.317 8 C -0.029 4.029 9 C 0.291 3.709 10 O -0.461 6.461 11 N -0.366 5.366 12 C 0.010 3.990 13 C -0.113 4.113 14 C -0.142 4.142 15 C 0.061 3.939 16 N -0.376 5.376 17 C -0.381 4.381 18 H 0.086 0.914 19 C -0.261 4.261 20 N -0.613 5.613 21 Si 0.798 3.202 22 H -0.207 1.207 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.199 4.199 26 C -0.190 4.190 27 O -0.095 6.095 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.225 0.775 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.148 0.852 36 H 0.256 0.744 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -26.408 -1.592 -13.763 29.822 hybrid contribution 0.961 0.289 -0.096 1.008 sum -25.447 -1.302 -13.859 29.006 Atomic orbital electron populations 1.20563 0.80512 1.05479 1.05873 1.24449 0.96886 0.83754 1.04036 1.23611 0.87059 1.02129 1.07971 1.70392 1.24992 1.10079 1.16941 1.26152 0.84775 0.90217 1.02932 1.20812 0.88626 0.97876 0.84370 1.88003 1.46739 1.70730 1.26224 1.22431 0.89907 0.98162 0.92434 1.20956 0.80210 0.77842 0.91852 1.90723 1.51134 1.50505 1.53732 1.45781 1.29916 1.51695 1.09197 1.21162 0.97444 0.99025 0.81331 1.21102 0.96015 1.00371 0.93845 1.21431 1.03587 0.94053 0.95152 1.20224 0.85234 0.94622 0.93827 1.42397 1.15346 1.28472 1.51429 1.19552 0.97012 1.02071 1.19436 0.91444 1.25452 0.99519 1.01217 0.99951 1.69786 1.22213 1.36659 1.32673 0.85294 0.78238 0.79292 0.77416 1.20670 1.21762 1.20793 1.23013 0.98971 0.94438 1.03460 1.23057 0.93968 1.02395 0.99596 1.84395 1.18001 1.37564 1.69525 0.89695 0.87580 0.86766 0.77450 0.86578 0.86402 0.86595 0.85233 0.74373 0.94325 0.91102 0.88760 0.91964 0.96695 0.97144 0.78969 0.93946 0.87091 0.90250 0.88826 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.24 0.74 0.28 16 2 C -0.04 -0.66 7.39 24.79 0.18 -0.47 16 3 C -0.07 -1.37 11.80 83.40 0.98 -0.38 16 4 N -0.49 -12.73 11.29 -303.83 -3.43 -16.16 16 5 C 0.17 3.82 7.97 88.34 0.70 4.52 16 6 C 0.16 2.56 6.56 71.24 0.47 3.02 16 7 O -0.40 -9.43 9.86 -129.94 -1.28 -10.71 16 8 C 0.05 0.80 6.42 71.24 0.46 1.26 16 9 C 0.50 13.29 7.91 87.66 0.69 13.98 16 10 O -0.58 -22.27 16.50 16.02 0.26 -22.01 16 11 N -0.71 -15.92 5.56 -463.06 -2.57 -18.49 16 12 C 0.13 3.67 5.51 86.38 0.48 4.14 16 13 C -0.08 -2.04 5.24 30.59 0.16 -1.88 16 14 C -0.14 -4.36 1.52 -52.18 -0.08 -4.44 16 15 C 0.19 7.74 6.10 86.38 0.53 8.27 16 16 N -0.73 -37.29 5.30 -343.46 -1.82 -39.11 16 17 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 18 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 20 N -0.96 -58.03 13.06 21.65 0.28 -57.75 16 21 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 25 C -0.16 -4.41 9.90 30.60 0.30 -4.11 16 26 C -0.15 -3.74 9.57 30.59 0.29 -3.44 16 27 O -0.21 -4.58 10.78 -3.74 -0.04 -4.62 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.21 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.42 6.34 8.47 -92.71 -0.79 5.56 16 37 H 0.04 1.33 7.69 -2.38 -0.02 1.31 16 38 H 0.07 1.87 7.80 -2.39 -0.02 1.85 16 39 H 0.09 1.96 7.94 -2.39 -0.02 1.94 16 40 H 0.06 2.02 7.64 -2.39 -0.02 2.00 16 41 H 0.02 0.65 7.69 -2.39 -0.02 0.64 16 42 H 0.01 0.45 8.09 -2.39 -0.02 0.43 16 43 H 0.38 19.99 7.46 -92.70 -0.69 19.30 16 44 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 45 H 0.11 2.53 8.08 -2.39 -0.02 2.52 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.11 2.28 7.98 -2.39 -0.02 2.26 16 Total: -1.00 -86.13 411.33 0.15 -85.98 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.50 Total: 30.28 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 7.22 Total: 3.97 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -7.54 Total: -131.51 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.06 Total: -37.34 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -86.13 0.15 -85.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166107178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.641 kcal (2) G-P(sol) polarization free energy of solvation -86.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds