Wall clock time and date at job start Tue Mar 31 2020 21:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50687 * 109.47209 * 2 1 4 4 O 1.33494 * 126.82913 * 275.26196 * 3 2 1 5 5 N 1.20660 * 113.16060 * 180.02562 * 4 3 2 6 6 C 1.30018 * 112.29560 * 359.71113 * 5 4 3 7 7 C 1.50706 * 127.33397 * 180.30358 * 6 5 4 8 8 C 1.37366 * 126.83320 * 95.28966 * 3 2 1 9 9 C 1.47399 * 128.56000 * 359.95034 * 8 3 2 10 10 O 1.21615 * 119.99634 * 95.96587 * 9 8 3 11 11 N 1.34773 * 120.00336 * 275.96259 * 9 8 3 12 12 C 1.47504 * 118.75749 * 174.81716 * 11 9 8 13 13 C 1.53574 * 111.02909 * 138.39299 * 12 11 9 14 14 C 1.51535 * 109.57864 * 320.02154 * 13 12 11 15 15 O 1.42151 * 108.74946 * 91.40126 * 14 13 12 16 16 C 1.38013 * 119.44498 * 272.76510 * 15 14 13 17 17 H 1.09001 * 109.47297 * 303.43226 * 16 15 14 18 18 C 1.52997 * 109.47544 * 183.43368 * 16 15 14 19 19 N 1.46505 * 109.47213 * 64.98920 * 18 16 15 20 20 C 1.36935 * 120.00055 * 179.72589 * 19 18 16 21 21 H 1.08001 * 119.99970 * 0.27909 * 20 19 18 22 22 C 1.38816 * 119.99859 * 180.27697 * 20 19 18 23 23 N 1.31618 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 119.99930 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47409 * 90.00098 * 24 22 20 26 26 H 1.48505 * 109.47292 * 210.00273 * 24 22 20 27 27 H 1.48507 * 109.47286 * 329.99968 * 24 22 20 28 28 C 1.45126 * 118.75535 * 354.84229 * 11 9 8 29 29 H 1.08997 * 109.47069 * 174.89440 * 1 2 3 30 30 H 1.08997 * 109.47045 * 294.89503 * 1 2 3 31 31 H 1.08998 * 109.46756 * 54.89612 * 1 2 3 32 32 H 1.09002 * 109.47006 * 239.99434 * 2 1 3 33 33 H 1.09003 * 109.46932 * 120.00323 * 2 1 3 34 34 H 1.08996 * 109.47025 * 270.14617 * 7 6 5 35 35 H 1.09005 * 109.46965 * 30.14871 * 7 6 5 36 36 H 1.08997 * 109.47432 * 150.14466 * 7 6 5 37 37 H 1.09000 * 109.16762 * 258.79023 * 12 11 9 38 38 H 1.09000 * 109.16850 * 17.99262 * 12 11 9 39 39 H 1.09002 * 109.44944 * 80.05909 * 13 12 11 40 40 H 1.09002 * 109.45306 * 199.99162 * 13 12 11 41 41 H 1.09000 * 109.58991 * 211.17955 * 14 13 12 42 42 H 1.08999 * 109.59470 * 331.62268 * 14 13 12 43 43 H 1.09002 * 109.47169 * 304.99093 * 18 16 15 44 44 H 1.09001 * 109.47761 * 184.99283 * 18 16 15 45 45 H 0.96998 * 119.99494 * 0.02562 * 19 18 16 46 46 H 0.96992 * 120.00106 * 180.02562 * 23 22 20 47 47 H 1.09004 * 109.45329 * 149.23921 * 28 11 9 48 48 H 1.08997 * 109.44615 * 29.27445 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2067 2.2078 -1.0640 5 7 2.6227 3.3043 -0.7801 6 6 2.7935 3.4507 0.5004 7 6 3.2895 4.6774 1.2219 8 6 2.4024 2.1633 1.0948 9 6 2.4016 1.7693 2.5151 10 8 3.4222 1.3574 3.0325 11 7 1.2698 1.8656 3.2405 12 6 1.2688 1.3566 4.6250 13 6 0.5166 2.3122 5.5629 14 6 0.8437 3.7457 5.1963 15 8 -0.1174 4.2076 4.2563 16 6 0.0906 3.9882 2.9097 17 1 1.0490 4.4163 2.6157 18 6 -1.0310 4.6490 2.1059 19 7 -0.9635 6.1025 2.2770 20 6 -1.8700 6.9094 1.6427 21 1 -2.6375 6.4740 1.0199 22 6 -1.8024 8.2869 1.8002 23 7 -0.8668 8.8175 2.5588 24 14 -3.0393 9.3876 0.9356 25 1 -4.2178 9.5943 1.8151 26 1 -2.4101 10.6987 0.6349 27 1 -3.4735 8.7449 -0.3309 28 6 0.0980 2.4657 2.6298 29 1 -0.3633 -1.0236 -0.0915 30 1 -0.3633 0.4326 0.9321 31 1 -0.3633 0.5910 -0.8407 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.3757 4.6367 1.3032 35 1 3.0000 5.5685 0.6649 36 1 2.8516 4.7142 2.2194 37 1 0.7856 0.3798 4.6468 38 1 2.2978 1.2537 4.9692 39 1 -0.5565 2.1479 5.4640 40 1 0.8191 2.1228 6.5928 41 1 0.8093 4.3684 6.0902 42 1 1.8389 3.7919 4.7541 43 1 -1.9953 4.2858 2.4614 44 1 -0.9162 4.4017 1.0506 45 1 -0.2740 6.4934 2.8361 46 1 -0.8198 9.7799 2.6692 47 1 -0.8013 2.0149 3.0496 48 1 0.1218 2.2944 1.5536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202030921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:22 Heat of formation + Delta-G solvation = -3.010898 kcal Electronic energy + Delta-G solvation = -31715.560338 eV Core-core repulsion = 27581.664564 eV Total energy + Delta-G solvation = -4133.895775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.93283 -40.62189 -38.59327 -35.47755 -35.27817 -34.76849 -34.47696 -33.03336 -31.10762 -30.45637 -28.96413 -28.63481 -26.96656 -25.56137 -24.53091 -23.84581 -22.68525 -21.57928 -21.07902 -20.20068 -19.42612 -17.92425 -17.61126 -17.26189 -16.92509 -16.65132 -16.33910 -15.76245 -15.24047 -15.05445 -14.62928 -14.37402 -14.07881 -13.78116 -13.69238 -13.40394 -13.31473 -13.12860 -13.06155 -12.93057 -12.69660 -12.66025 -12.38719 -12.18733 -11.88676 -11.87969 -11.66852 -11.36226 -11.04696 -10.98893 -10.81700 -10.80844 -10.43082 -10.22773 -10.03950 -9.86359 -9.72476 -9.49392 -9.45162 -8.87520 -8.68372 -6.90286 -5.73632 -3.02258 1.19628 1.90254 2.17545 2.62850 2.95631 3.45429 3.50356 3.52014 3.86517 4.00213 4.10531 4.39559 4.57716 4.64779 4.68123 4.77023 4.79316 4.86410 4.91535 5.01321 5.07980 5.12479 5.24815 5.36024 5.37589 5.45644 5.49846 5.51928 5.55120 5.59681 5.61517 5.63745 5.72200 5.74837 5.83357 5.87053 5.96695 6.03684 6.13677 6.24952 6.29397 6.52178 6.68142 7.05223 7.70755 7.84913 7.91481 8.21160 8.44201 9.56250 10.12591 10.48576 11.49074 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004240 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.445719 B = 6602.568040 C = 7731.324423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.045 4.045 3 C 0.012 3.988 4 O 0.101 5.899 5 N -0.349 5.349 6 C 0.065 3.935 7 C -0.081 4.081 8 C -0.246 4.246 9 C 0.600 3.400 10 O -0.529 6.529 11 N -0.597 5.597 12 C 0.110 3.890 13 C -0.165 4.165 14 C 0.072 3.928 15 O -0.365 6.365 16 C 0.084 3.916 17 H 0.053 0.947 18 C 0.167 3.833 19 N -0.723 5.723 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.070 3.930 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.028 0.972 44 H 0.030 0.970 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.090 0.910 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -20.627 0.802 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.083 4.083 3 C -0.052 4.052 4 O 0.039 5.961 5 N -0.054 5.054 6 C -0.098 4.098 7 C -0.138 4.138 8 C -0.253 4.253 9 C 0.386 3.614 10 O -0.405 6.405 11 N -0.329 5.329 12 C -0.011 4.011 13 C -0.203 4.203 14 C -0.005 4.005 15 O -0.283 6.283 16 C 0.024 3.976 17 H 0.070 0.930 18 C 0.038 3.962 19 N -0.368 5.368 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.054 4.054 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.221 0.779 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.964 -19.923 -0.004 20.797 hybrid contribution -0.265 0.370 0.375 0.590 sum 5.699 -19.553 0.371 20.370 Atomic orbital electron populations 1.21862 0.92827 1.03206 1.03366 1.20222 0.97180 0.85918 1.05017 1.24585 0.99002 0.96083 0.85526 1.84546 1.61469 1.17056 1.33067 1.73654 1.16278 0.98905 1.16609 1.24724 1.00191 0.95872 0.88971 1.20314 1.01474 0.92202 0.99852 1.21789 1.12670 0.95866 0.95010 1.17069 0.83140 0.77183 0.83990 1.90793 1.31938 1.46237 1.71531 1.47837 1.11644 1.59801 1.13644 1.21896 1.02825 0.96553 0.79846 1.22498 1.02059 0.96284 0.99498 1.22156 0.92048 0.93464 0.92810 1.86450 1.47578 1.79419 1.14877 1.22410 1.00376 0.92041 0.82773 0.92965 1.20583 0.94217 0.86670 0.94685 1.42182 1.37408 0.98792 1.58393 1.19196 1.07474 0.88170 1.22191 0.91251 1.24714 0.98937 0.96653 1.00450 1.69664 1.34972 1.10736 1.42570 0.86208 0.80677 0.80337 0.79073 1.21718 1.21795 1.20783 1.22700 0.87981 0.95456 0.99228 0.90873 0.91842 0.91378 0.88621 0.88714 0.89735 0.88998 0.90007 0.91376 0.88894 0.89987 0.89547 0.89064 0.93382 0.95374 0.95287 0.77927 0.93559 0.89162 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.77 37.16 0.36 -0.71 16 2 C -0.05 -0.35 6.41 -27.89 -0.18 -0.53 16 3 C 0.01 0.14 6.29 -34.63 -0.22 -0.08 16 4 O 0.10 1.37 11.06 18.65 0.21 1.58 16 5 N -0.35 -5.45 12.01 34.78 0.42 -5.03 16 6 C 0.06 0.98 7.59 -79.77 -0.61 0.37 16 7 C -0.08 -1.15 10.23 36.01 0.37 -0.78 16 8 C -0.25 -3.39 4.41 -102.89 -0.45 -3.85 16 9 C 0.60 8.37 7.32 -12.53 -0.09 8.28 16 10 O -0.53 -8.68 16.40 5.26 0.09 -8.59 16 11 N -0.60 -7.20 2.19 -173.75 -0.38 -7.59 16 12 C 0.11 1.12 6.18 -3.19 -0.02 1.10 16 13 C -0.17 -1.63 5.79 -27.17 -0.16 -1.79 16 14 C 0.07 0.94 6.38 36.42 0.23 1.17 16 15 O -0.37 -6.17 9.38 -26.53 -0.25 -6.42 16 16 C 0.08 1.38 2.68 -25.78 -0.07 1.31 16 17 H 0.05 0.92 5.96 -51.93 -0.31 0.61 16 18 C 0.17 3.33 5.92 -4.04 -0.02 3.31 16 19 N -0.72 -18.44 5.54 -59.90 -0.33 -18.77 16 20 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 24 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.07 0.89 4.33 -3.83 -0.02 0.87 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 6.47 -51.93 -0.34 0.15 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.73 8.00 -51.93 -0.42 0.31 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.18 6.30 -51.93 -0.33 0.85 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.01 6.95 -51.93 -0.36 0.65 16 39 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.66 7.40 -51.93 -0.38 0.27 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.39 10.52 7.65 -40.82 -0.31 10.21 16 46 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 48 H 0.09 1.08 4.90 -51.93 -0.25 0.82 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -34.00 386.61 -7.15 -41.15 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.31 Total: 6.52 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.12 Total: 1.37 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.43 Total: -58.94 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.04 Total: -13.43 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.00 -7.15 -41.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202030921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.138 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds