Wall clock time and date at job start Tue Mar 31 2020 21:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50687 * 109.47209 * 2 1 4 4 O 1.33494 * 126.82913 * 275.26196 * 3 2 1 5 5 N 1.20660 * 113.16060 * 180.02562 * 4 3 2 6 6 C 1.30018 * 112.29560 * 359.71113 * 5 4 3 7 7 C 1.50706 * 127.33397 * 180.30358 * 6 5 4 8 8 C 1.37366 * 126.83320 * 95.28966 * 3 2 1 9 9 C 1.47399 * 128.56000 * 359.95034 * 8 3 2 10 10 O 1.21615 * 119.99634 * 95.96587 * 9 8 3 11 11 N 1.34773 * 120.00336 * 275.96259 * 9 8 3 12 12 C 1.47504 * 118.75749 * 174.81716 * 11 9 8 13 13 C 1.53574 * 111.02909 * 138.39299 * 12 11 9 14 14 C 1.51535 * 109.57864 * 320.02154 * 13 12 11 15 15 O 1.42151 * 108.74946 * 91.40126 * 14 13 12 16 16 C 1.38013 * 119.44498 * 272.76510 * 15 14 13 17 17 H 1.09001 * 109.47297 * 303.43226 * 16 15 14 18 18 C 1.52997 * 109.47544 * 183.43368 * 16 15 14 19 19 N 1.46505 * 109.47213 * 64.98920 * 18 16 15 20 20 C 1.36935 * 120.00055 * 179.72589 * 19 18 16 21 21 H 1.08001 * 119.99970 * 0.27909 * 20 19 18 22 22 C 1.38816 * 119.99859 * 180.27697 * 20 19 18 23 23 N 1.31618 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 119.99930 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47409 * 90.00098 * 24 22 20 26 26 H 1.48505 * 109.47292 * 210.00273 * 24 22 20 27 27 H 1.48507 * 109.47286 * 329.99968 * 24 22 20 28 28 C 1.45126 * 118.75535 * 354.84229 * 11 9 8 29 29 H 1.08997 * 109.47069 * 174.89440 * 1 2 3 30 30 H 1.08997 * 109.47045 * 294.89503 * 1 2 3 31 31 H 1.08998 * 109.46756 * 54.89612 * 1 2 3 32 32 H 1.09002 * 109.47006 * 239.99434 * 2 1 3 33 33 H 1.09003 * 109.46932 * 120.00323 * 2 1 3 34 34 H 1.08996 * 109.47025 * 270.14617 * 7 6 5 35 35 H 1.09005 * 109.46965 * 30.14871 * 7 6 5 36 36 H 1.08997 * 109.47432 * 150.14466 * 7 6 5 37 37 H 1.09000 * 109.16762 * 258.79023 * 12 11 9 38 38 H 1.09000 * 109.16850 * 17.99262 * 12 11 9 39 39 H 1.09002 * 109.44944 * 80.05909 * 13 12 11 40 40 H 1.09002 * 109.45306 * 199.99162 * 13 12 11 41 41 H 1.09000 * 109.58991 * 211.17955 * 14 13 12 42 42 H 1.08999 * 109.59470 * 331.62268 * 14 13 12 43 43 H 1.09002 * 109.47169 * 304.99093 * 18 16 15 44 44 H 1.09001 * 109.47761 * 184.99283 * 18 16 15 45 45 H 0.96998 * 119.99494 * 0.02562 * 19 18 16 46 46 H 0.96992 * 120.00106 * 180.02562 * 23 22 20 47 47 H 1.09004 * 109.45329 * 149.23921 * 28 11 9 48 48 H 1.08997 * 109.44615 * 29.27445 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2067 2.2078 -1.0640 5 7 2.6227 3.3043 -0.7801 6 6 2.7935 3.4507 0.5004 7 6 3.2895 4.6774 1.2219 8 6 2.4024 2.1633 1.0948 9 6 2.4016 1.7693 2.5151 10 8 3.4222 1.3574 3.0325 11 7 1.2698 1.8656 3.2405 12 6 1.2688 1.3566 4.6250 13 6 0.5166 2.3122 5.5629 14 6 0.8437 3.7457 5.1963 15 8 -0.1174 4.2076 4.2563 16 6 0.0906 3.9882 2.9097 17 1 1.0490 4.4163 2.6157 18 6 -1.0310 4.6490 2.1059 19 7 -0.9635 6.1025 2.2770 20 6 -1.8700 6.9094 1.6427 21 1 -2.6375 6.4740 1.0199 22 6 -1.8024 8.2869 1.8002 23 7 -0.8668 8.8175 2.5588 24 14 -3.0393 9.3876 0.9356 25 1 -4.2178 9.5943 1.8151 26 1 -2.4101 10.6987 0.6349 27 1 -3.4735 8.7449 -0.3309 28 6 0.0980 2.4657 2.6298 29 1 -0.3633 -1.0236 -0.0915 30 1 -0.3633 0.4326 0.9321 31 1 -0.3633 0.5910 -0.8407 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.3757 4.6367 1.3032 35 1 3.0000 5.5685 0.6649 36 1 2.8516 4.7142 2.2194 37 1 0.7856 0.3798 4.6468 38 1 2.2978 1.2537 4.9692 39 1 -0.5565 2.1479 5.4640 40 1 0.8191 2.1228 6.5928 41 1 0.8093 4.3684 6.0902 42 1 1.8389 3.7919 4.7541 43 1 -1.9953 4.2858 2.4614 44 1 -0.9162 4.4017 1.0506 45 1 -0.2740 6.4934 2.8361 46 1 -0.8198 9.7799 2.6692 47 1 -0.8013 2.0149 3.0496 48 1 0.1218 2.2944 1.5536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202030921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:21 Heat of formation + Delta-G solvation = -24.998114 kcal Electronic energy + Delta-G solvation = -31716.513776 eV Core-core repulsion = 27581.664564 eV Total energy + Delta-G solvation = -4134.849212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.02932 -41.71290 -39.79787 -36.78343 -36.43898 -35.87980 -35.65136 -34.39708 -32.81216 -31.41153 -30.31678 -29.84308 -28.02551 -27.02804 -25.64778 -24.79676 -24.29466 -22.75978 -22.33731 -21.18477 -20.45126 -19.25957 -19.00884 -18.68367 -18.09693 -17.78348 -17.42313 -16.89630 -16.64429 -16.20937 -15.98651 -15.51824 -15.15386 -14.94954 -14.80031 -14.75331 -14.70453 -14.46256 -14.19614 -13.97005 -13.93101 -13.68391 -13.49964 -13.34151 -13.22849 -12.77804 -12.75036 -12.58772 -12.48050 -12.38731 -12.12716 -11.94989 -11.86559 -11.81445 -11.56456 -11.34988 -10.98277 -10.96239 -10.60380 -10.47548 -9.77306 -8.99672 -7.93209 -5.22102 0.22586 0.77043 1.08783 1.47480 1.49419 1.57495 1.66104 2.01056 2.56466 2.67199 2.92412 3.13637 3.37148 3.41158 3.59747 3.76014 3.82834 3.88770 3.96844 4.05633 4.11551 4.19528 4.22529 4.29195 4.32430 4.36577 4.41292 4.44477 4.48922 4.55882 4.62504 4.73169 4.77942 4.81487 4.84251 4.92714 4.97641 5.03320 5.06085 5.10267 5.20647 5.33549 5.36058 5.49061 6.01109 6.27268 6.69357 6.81103 7.16081 7.34501 8.08485 8.32805 9.30356 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004240 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.445719 B = 6602.568040 C = 7731.324423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.045 4.045 3 C 0.031 3.969 4 O 0.101 5.899 5 N -0.375 5.375 6 C 0.047 3.953 7 C -0.078 4.078 8 C -0.268 4.268 9 C 0.604 3.396 10 O -0.557 6.557 11 N -0.589 5.589 12 C 0.107 3.893 13 C -0.153 4.153 14 C 0.066 3.934 15 O -0.392 6.392 16 C 0.094 3.906 17 H 0.034 0.966 18 C 0.166 3.834 19 N -0.737 5.737 20 C -0.244 4.244 21 H 0.077 0.923 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.269 1.269 28 C 0.085 3.915 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.036 0.964 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.113 0.887 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -23.274 0.791 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.083 4.083 3 C -0.033 4.033 4 O 0.039 5.961 5 N -0.081 5.081 6 C -0.114 4.114 7 C -0.135 4.135 8 C -0.275 4.275 9 C 0.391 3.609 10 O -0.435 6.435 11 N -0.319 5.319 12 C -0.013 4.013 13 C -0.191 4.191 14 C -0.010 4.010 15 O -0.311 6.311 16 C 0.033 3.967 17 H 0.052 0.948 18 C 0.039 3.961 19 N -0.379 5.379 20 C -0.376 4.376 21 H 0.095 0.905 22 C -0.265 4.265 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.213 1.213 26 H -0.223 1.223 27 H -0.194 1.194 28 C -0.039 4.039 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.131 0.869 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.676 -22.619 -0.018 23.097 hybrid contribution 0.137 1.123 0.402 1.201 sum 4.814 -21.495 0.384 22.031 Atomic orbital electron populations 1.21875 0.91729 1.04684 1.02746 1.20508 0.97899 0.83266 1.06594 1.25339 0.96723 0.97008 0.84241 1.84509 1.61181 1.16763 1.33624 1.73634 1.17437 1.00054 1.16975 1.24906 1.00614 0.96684 0.89238 1.20261 1.02407 0.91756 0.99082 1.21841 1.14303 0.95742 0.95618 1.17059 0.83102 0.76718 0.84001 1.90776 1.32872 1.47791 1.72093 1.47849 1.10872 1.58886 1.14328 1.22113 1.02923 0.97820 0.78478 1.22417 1.02208 0.93525 1.00938 1.22361 0.90779 0.95896 0.91955 1.86377 1.48923 1.80598 1.15203 1.22138 0.97783 0.94245 0.82489 0.94833 1.20707 0.95854 0.83984 0.95599 1.42369 1.36599 1.01030 1.57927 1.19621 1.07531 0.88841 1.21580 0.90528 1.25537 1.01050 0.98163 1.01779 1.69828 1.36992 1.10572 1.44494 0.85165 0.78285 0.78054 0.78415 1.21288 1.22322 1.19378 1.22501 0.88975 0.92670 0.99770 0.88337 0.92493 0.91989 0.86152 0.87981 0.88230 0.90261 0.90824 0.88424 0.89544 0.89604 0.86724 0.88576 0.94548 0.94897 0.94897 0.79448 0.94100 0.86909 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.77 71.98 0.70 -0.94 16 2 C -0.04 -0.58 6.41 29.85 0.19 -0.38 16 3 C 0.03 0.69 6.29 25.48 0.16 0.85 16 4 O 0.10 2.69 11.06 76.97 0.85 3.54 16 5 N -0.37 -11.87 12.01 -44.78 -0.54 -12.41 16 6 C 0.05 1.46 7.59 45.16 0.34 1.80 16 7 C -0.08 -2.32 10.23 71.24 0.73 -1.59 16 8 C -0.27 -7.25 4.41 -18.74 -0.08 -7.33 16 9 C 0.60 16.31 7.32 86.66 0.63 16.94 16 10 O -0.56 -17.91 16.40 -4.08 -0.07 -17.97 16 11 N -0.59 -13.18 2.19 -821.86 -1.80 -14.98 16 12 C 0.11 1.88 6.18 86.38 0.53 2.42 16 13 C -0.15 -2.62 5.79 30.31 0.18 -2.44 16 14 C 0.07 1.68 6.38 71.50 0.46 2.13 16 15 O -0.39 -13.14 9.38 -117.84 -1.11 -14.25 16 16 C 0.09 3.05 2.68 31.21 0.08 3.14 16 17 H 0.03 1.23 5.96 -2.39 -0.01 1.22 16 18 C 0.17 6.61 5.92 86.38 0.51 7.12 16 19 N -0.74 -38.27 5.54 -343.44 -1.90 -40.17 16 20 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 21 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 23 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 24 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 28 C 0.09 2.00 4.33 87.25 0.38 2.37 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.69 6.47 -2.39 -0.02 0.68 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.24 8.00 -2.39 -0.02 1.22 16 34 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.07 2.28 6.30 -2.39 -0.02 2.26 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.70 6.95 -2.39 -0.02 1.68 16 39 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.04 1.00 7.40 -2.39 -0.02 0.98 16 43 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.37 21.07 7.65 -92.71 -0.71 20.37 16 46 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.11 2.20 8.11 -2.38 -0.02 2.18 16 48 H 0.09 2.10 4.90 -2.39 -0.01 2.09 16 Total: -1.00 -74.89 386.61 4.15 -70.74 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.28 Total: 29.43 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 6.12 Total: 7.34 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -3.96 Total: -127.51 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.32 Total: -28.68 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -74.89 4.15 -70.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202030921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.743 kcal (2) G-P(sol) polarization free energy of solvation -74.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds