Wall clock time and date at job start Tue Mar 31 2020 21:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47038 * 2 1 4 4 O 1.33497 * 126.83010 * 269.98000 * 3 2 1 5 5 N 1.20656 * 113.15762 * 180.02562 * 4 3 2 6 6 C 1.30013 * 112.29880 * 359.70498 * 5 4 3 7 7 C 1.50701 * 127.33440 * 180.30312 * 6 5 4 8 8 C 1.37356 * 126.83090 * 89.99988 * 3 2 1 9 9 C 1.47407 * 128.56420 * 359.96112 * 8 3 2 10 10 O 1.21597 * 119.99987 * 89.99180 * 9 8 3 11 11 N 1.34783 * 119.99709 * 270.00201 * 9 8 3 12 12 C 1.47508 * 118.75741 * 359.97291 * 11 9 8 13 13 C 1.53567 * 111.02880 * 221.63529 * 12 11 9 14 14 C 1.51531 * 109.58257 * 39.97980 * 13 12 11 15 15 O 1.42082 * 108.75999 * 268.58959 * 14 13 12 16 16 C 1.38010 * 119.43797 * 87.24383 * 15 14 13 17 17 H 1.09004 * 109.47179 * 56.55907 * 16 15 14 18 18 C 1.53006 * 109.46925 * 176.55647 * 16 15 14 19 19 N 1.46500 * 109.46998 * 300.00952 * 18 16 15 20 20 C 1.36931 * 120.00400 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99768 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00553 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00516 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99849 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47233 * 90.00350 * 24 22 20 26 26 H 1.48498 * 109.47583 * 210.00323 * 24 22 20 27 27 H 1.48500 * 109.47393 * 330.00560 * 24 22 20 28 28 C 1.45115 * 118.75587 * 179.97438 * 11 9 8 29 29 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47257 * 299.99661 * 1 2 3 31 31 H 1.09001 * 109.47413 * 60.00009 * 1 2 3 32 32 H 1.08996 * 109.47257 * 240.00339 * 2 1 3 33 33 H 1.09001 * 109.47413 * 119.99991 * 2 1 3 34 34 H 1.09003 * 109.47493 * 270.15209 * 7 6 5 35 35 H 1.09005 * 109.47083 * 30.14972 * 7 6 5 36 36 H 1.09003 * 109.47360 * 150.15152 * 7 6 5 37 37 H 1.09006 * 109.16792 * 342.03450 * 12 11 9 38 38 H 1.08999 * 109.16363 * 101.28606 * 12 11 9 39 39 H 1.09000 * 109.45188 * 160.01432 * 13 12 11 40 40 H 1.09004 * 109.45306 * 279.94418 * 13 12 11 41 41 H 1.08997 * 109.58886 * 28.37631 * 14 13 12 42 42 H 1.08996 * 109.59408 * 148.67482 * 14 13 12 43 43 H 1.09000 * 109.47050 * 60.00897 * 18 16 15 44 44 H 1.09001 * 109.46801 * 180.02562 * 18 16 15 45 45 H 0.97010 * 119.99910 * 359.97438 * 19 18 16 46 46 H 0.96997 * 120.00060 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.46323 * 330.69870 * 28 11 9 48 48 H 1.08992 * 109.46556 * 210.73560 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1752 -1.0685 5 7 2.6905 3.2804 -0.7833 6 6 2.7497 3.4663 0.5021 7 6 3.1827 4.7151 1.2259 8 6 2.3067 2.1971 1.0994 9 6 2.1821 1.8470 2.5258 10 8 3.1233 1.3509 3.1146 11 7 1.0248 2.0765 3.1774 12 6 -0.0991 2.6798 2.4367 13 6 -0.8126 3.7414 3.2864 14 6 0.2126 4.5476 4.0579 15 8 0.4153 3.9366 5.3245 16 6 1.3525 2.9314 5.4505 17 1 2.3242 3.2968 5.1184 18 6 1.4435 2.4997 6.9156 19 7 1.8417 3.6448 7.7382 20 6 1.9892 3.4973 9.0915 21 1 1.8116 2.5370 9.5526 22 6 2.3659 4.5823 9.8710 23 7 2.5082 4.4405 11.1718 24 14 2.6724 6.2436 9.0736 25 1 1.4068 7.0201 9.0453 26 1 3.6921 6.9876 9.8557 27 1 3.1617 6.0439 7.6858 28 6 0.9316 1.7209 4.5812 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.2578 4.6785 1.4025 35 1 2.9438 5.5884 0.6188 36 1 2.6599 4.7819 2.1801 37 1 0.2806 3.1454 1.5271 38 1 -0.8111 1.8992 2.1686 39 1 -1.3814 4.4054 2.6354 40 1 -1.4901 3.2514 3.9858 41 1 1.1527 4.5665 3.5066 42 1 -0.1512 5.5658 4.1953 43 1 0.4719 2.1341 7.2477 44 1 2.1841 1.7061 7.0152 45 1 2.0016 4.5073 7.3240 46 1 2.7718 5.1987 11.7164 47 1 1.5919 0.8785 4.7871 48 1 -0.0954 1.4432 4.8182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202030922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:26 Heat of formation + Delta-G solvation = 1.096979 kcal Electronic energy + Delta-G solvation = -31075.727842 eV Core-core repulsion = 26942.010198 eV Total energy + Delta-G solvation = -4133.717644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.23498 -40.72732 -38.65852 -35.91373 -35.22763 -34.89010 -34.78902 -32.96477 -31.19895 -30.88061 -29.41054 -28.97844 -27.08498 -25.90897 -24.60142 -23.92349 -22.33222 -21.82793 -21.09136 -20.51714 -19.56721 -18.19471 -17.97211 -17.68436 -16.88111 -16.70246 -16.55673 -15.94090 -15.34520 -15.20398 -14.71946 -14.41371 -14.32445 -13.97722 -13.80543 -13.74406 -13.53806 -13.44405 -13.29498 -12.97601 -12.92729 -12.65132 -12.53913 -12.24855 -12.10728 -11.97309 -11.88158 -11.56649 -11.34890 -11.22219 -10.96864 -10.82360 -10.52121 -10.31021 -10.17155 -10.07201 -9.71804 -9.59483 -9.54106 -8.85613 -8.77971 -7.16596 -5.71236 -3.05717 0.93923 1.56015 2.08221 2.42399 2.77116 3.43287 3.47411 3.49889 3.68324 3.76380 3.83912 4.17407 4.39550 4.45483 4.52779 4.59339 4.64316 4.65740 4.76707 4.78988 4.99245 5.01150 5.11805 5.12326 5.18349 5.25504 5.28708 5.30032 5.33675 5.35105 5.44121 5.45693 5.58576 5.63885 5.65704 5.69398 5.76805 5.83457 5.91877 5.96612 6.28771 6.54318 6.65255 6.93374 7.78614 7.80869 7.87438 8.04678 8.47822 9.27544 10.00014 10.20743 11.47262 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.003152 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.830866 B = 8880.895816 C = 9261.469192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.048 4.048 3 C 0.018 3.982 4 O 0.098 5.902 5 N -0.354 5.354 6 C 0.055 3.945 7 C -0.081 4.081 8 C -0.243 4.243 9 C 0.592 3.408 10 O -0.514 6.514 11 N -0.597 5.597 12 C 0.107 3.893 13 C -0.166 4.166 14 C 0.071 3.929 15 O -0.369 6.369 16 C 0.084 3.916 17 H 0.052 0.948 18 C 0.171 3.829 19 N -0.749 5.749 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.936 5.936 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.081 3.919 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.036 0.964 44 H 0.044 0.956 45 H 0.364 0.636 46 H 0.259 0.741 47 H 0.098 0.902 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 -6.158 -28.401 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 C -0.046 4.046 4 O 0.036 5.964 5 N -0.060 5.060 6 C -0.107 4.107 7 C -0.138 4.138 8 C -0.250 4.250 9 C 0.377 3.623 10 O -0.388 6.388 11 N -0.330 5.330 12 C -0.016 4.016 13 C -0.205 4.205 14 C -0.006 4.006 15 O -0.287 6.287 16 C 0.024 3.976 17 H 0.069 0.931 18 C 0.043 3.957 19 N -0.395 5.395 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.584 5.584 24 Si 0.717 3.283 25 H -0.210 1.210 26 H -0.219 1.219 27 H -0.205 1.205 28 C -0.042 4.042 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.197 0.803 46 H 0.069 0.931 47 H 0.116 0.884 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.766 -5.737 -28.757 30.094 hybrid contribution 0.317 0.938 -0.107 0.996 sum -6.450 -4.798 -28.865 29.963 Atomic orbital electron populations 1.21857 0.92848 1.03355 1.02962 1.20265 0.97092 0.85821 1.05443 1.24645 0.98525 0.96314 0.85066 1.84534 1.61490 1.17477 1.32896 1.73630 1.17289 0.98614 1.16477 1.24756 1.00504 0.96507 0.88982 1.20291 1.02892 0.91176 0.99471 1.21883 1.12474 0.95513 0.95150 1.17073 0.82746 0.78383 0.84076 1.90869 1.37675 1.42716 1.67577 1.47859 1.12661 1.61480 1.11033 1.22032 0.88431 0.96273 0.94832 1.22502 0.99643 0.98258 1.00047 1.22157 0.97247 0.96268 0.84891 1.86417 1.59709 1.51939 1.30657 1.22364 0.91160 0.86870 0.97220 0.93057 1.20596 0.98470 0.91278 0.85332 1.42541 1.84101 1.07810 1.05052 1.19057 1.38867 0.97769 0.81393 0.89172 1.24642 1.01710 0.97585 0.95237 1.69705 1.54369 1.30638 1.03688 0.86507 0.77786 0.85518 0.78494 1.21038 1.21865 1.20470 1.22499 1.03696 0.99623 0.78427 0.90710 0.91938 0.91719 0.88538 0.88236 0.89296 0.89670 0.89963 0.90312 0.91101 0.89574 0.89536 0.93603 0.89118 0.94611 0.93863 0.80267 0.93121 0.88370 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 37.16 0.37 -0.33 16 2 C -0.05 -0.29 6.38 -27.88 -0.18 -0.47 16 3 C 0.02 0.16 6.80 -34.63 -0.24 -0.07 16 4 O 0.10 1.00 11.06 18.64 0.21 1.20 16 5 N -0.35 -4.05 12.01 34.78 0.42 -3.63 16 6 C 0.05 0.61 7.33 -79.77 -0.58 0.02 16 7 C -0.08 -0.75 10.49 36.01 0.38 -0.38 16 8 C -0.24 -2.71 4.17 -102.89 -0.43 -3.14 16 9 C 0.59 7.65 7.42 -12.52 -0.09 7.56 16 10 O -0.51 -8.67 16.53 5.28 0.09 -8.58 16 11 N -0.60 -6.62 2.19 -173.72 -0.38 -7.00 16 12 C 0.11 0.87 5.72 -3.20 -0.02 0.85 16 13 C -0.17 -1.40 5.78 -27.18 -0.16 -1.56 16 14 C 0.07 0.82 6.37 36.41 0.23 1.05 16 15 O -0.37 -5.88 9.18 -26.52 -0.24 -6.12 16 16 C 0.08 1.36 2.73 -25.75 -0.07 1.29 16 17 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.17 3.40 5.95 -4.04 -0.02 3.37 16 19 N -0.75 -18.64 5.29 -59.91 -0.32 -18.96 16 20 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 21 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 22 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 23 N -0.94 -30.00 13.97 55.49 0.78 -29.23 16 24 Si 0.89 22.92 27.74 -169.99 -4.71 18.20 16 25 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 28 C 0.08 1.02 4.87 -3.80 -0.02 1.01 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.32 6.18 -51.93 -0.32 0.00 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.77 6.71 -51.93 -0.35 0.42 16 37 H 0.08 0.63 6.13 -51.93 -0.32 0.31 16 38 H 0.07 0.46 6.57 -51.93 -0.34 0.11 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.79 8.01 -51.93 -0.42 0.38 16 41 H 0.05 0.53 5.96 -51.93 -0.31 0.22 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.36 9.04 5.39 -40.82 -0.22 8.82 16 46 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 47 H 0.10 1.32 7.27 -51.93 -0.38 0.94 16 48 H 0.09 1.00 8.11 -51.93 -0.42 0.57 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -35.97 384.83 -6.77 -42.74 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.31 Total: 3.54 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.08 Total: 2.04 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.50 Total: -58.82 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.05 Total: -13.49 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.97 -6.77 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202030922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.833 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds