Wall clock time and date at job start Tue Mar 31 2020 21:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47038 * 2 1 4 4 O 1.33497 * 126.83010 * 269.98000 * 3 2 1 5 5 N 1.20656 * 113.15762 * 180.02562 * 4 3 2 6 6 C 1.30013 * 112.29880 * 359.70498 * 5 4 3 7 7 C 1.50701 * 127.33440 * 180.30312 * 6 5 4 8 8 C 1.37356 * 126.83090 * 89.99988 * 3 2 1 9 9 C 1.47407 * 128.56420 * 359.96112 * 8 3 2 10 10 O 1.21597 * 119.99987 * 89.99180 * 9 8 3 11 11 N 1.34783 * 119.99709 * 270.00201 * 9 8 3 12 12 C 1.47508 * 118.75741 * 359.97291 * 11 9 8 13 13 C 1.53567 * 111.02880 * 221.63529 * 12 11 9 14 14 C 1.51531 * 109.58257 * 39.97980 * 13 12 11 15 15 O 1.42082 * 108.75999 * 268.58959 * 14 13 12 16 16 C 1.38010 * 119.43797 * 87.24383 * 15 14 13 17 17 H 1.09004 * 109.47179 * 56.55907 * 16 15 14 18 18 C 1.53006 * 109.46925 * 176.55647 * 16 15 14 19 19 N 1.46500 * 109.46998 * 300.00952 * 18 16 15 20 20 C 1.36931 * 120.00400 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99768 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00553 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00516 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99849 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47233 * 90.00350 * 24 22 20 26 26 H 1.48498 * 109.47583 * 210.00323 * 24 22 20 27 27 H 1.48500 * 109.47393 * 330.00560 * 24 22 20 28 28 C 1.45115 * 118.75587 * 179.97438 * 11 9 8 29 29 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47257 * 299.99661 * 1 2 3 31 31 H 1.09001 * 109.47413 * 60.00009 * 1 2 3 32 32 H 1.08996 * 109.47257 * 240.00339 * 2 1 3 33 33 H 1.09001 * 109.47413 * 119.99991 * 2 1 3 34 34 H 1.09003 * 109.47493 * 270.15209 * 7 6 5 35 35 H 1.09005 * 109.47083 * 30.14972 * 7 6 5 36 36 H 1.09003 * 109.47360 * 150.15152 * 7 6 5 37 37 H 1.09006 * 109.16792 * 342.03450 * 12 11 9 38 38 H 1.08999 * 109.16363 * 101.28606 * 12 11 9 39 39 H 1.09000 * 109.45188 * 160.01432 * 13 12 11 40 40 H 1.09004 * 109.45306 * 279.94418 * 13 12 11 41 41 H 1.08997 * 109.58886 * 28.37631 * 14 13 12 42 42 H 1.08996 * 109.59408 * 148.67482 * 14 13 12 43 43 H 1.09000 * 109.47050 * 60.00897 * 18 16 15 44 44 H 1.09001 * 109.46801 * 180.02562 * 18 16 15 45 45 H 0.97010 * 119.99910 * 359.97438 * 19 18 16 46 46 H 0.96997 * 120.00060 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.46323 * 330.69870 * 28 11 9 48 48 H 1.08992 * 109.46556 * 210.73560 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1752 -1.0685 5 7 2.6905 3.2804 -0.7833 6 6 2.7497 3.4663 0.5021 7 6 3.1827 4.7151 1.2259 8 6 2.3067 2.1971 1.0994 9 6 2.1821 1.8470 2.5258 10 8 3.1233 1.3509 3.1146 11 7 1.0248 2.0765 3.1774 12 6 -0.0991 2.6798 2.4367 13 6 -0.8126 3.7414 3.2864 14 6 0.2126 4.5476 4.0579 15 8 0.4153 3.9366 5.3245 16 6 1.3525 2.9314 5.4505 17 1 2.3242 3.2968 5.1184 18 6 1.4435 2.4997 6.9156 19 7 1.8417 3.6448 7.7382 20 6 1.9892 3.4973 9.0915 21 1 1.8116 2.5370 9.5526 22 6 2.3659 4.5823 9.8710 23 7 2.5082 4.4405 11.1718 24 14 2.6724 6.2436 9.0736 25 1 1.4068 7.0201 9.0453 26 1 3.6921 6.9876 9.8557 27 1 3.1617 6.0439 7.6858 28 6 0.9316 1.7209 4.5812 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.2578 4.6785 1.4025 35 1 2.9438 5.5884 0.6188 36 1 2.6599 4.7819 2.1801 37 1 0.2806 3.1454 1.5271 38 1 -0.8111 1.8992 2.1686 39 1 -1.3814 4.4054 2.6354 40 1 -1.4901 3.2514 3.9858 41 1 1.1527 4.5665 3.5066 42 1 -0.1512 5.5658 4.1953 43 1 0.4719 2.1341 7.2477 44 1 2.1841 1.7061 7.0152 45 1 2.0016 4.5073 7.3240 46 1 2.7718 5.1987 11.7164 47 1 1.5919 0.8785 4.7871 48 1 -0.0954 1.4432 4.8182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202030922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:25 Heat of formation + Delta-G solvation = -23.150493 kcal Electronic energy + Delta-G solvation = -31076.779292 eV Core-core repulsion = 26942.010198 eV Total energy + Delta-G solvation = -4134.769093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.03575 -41.73828 -39.78531 -37.10139 -36.39521 -35.84431 -35.65639 -34.37085 -33.02649 -31.61428 -30.54567 -29.86170 -28.21055 -26.99357 -25.66205 -24.69565 -23.85404 -22.90880 -22.41069 -21.28189 -20.42427 -19.80522 -19.03449 -18.81199 -17.81516 -17.78587 -17.59950 -16.92661 -16.49374 -16.20045 -16.15474 -15.62224 -15.24824 -14.99817 -14.87599 -14.79017 -14.51282 -14.47176 -14.31332 -14.01245 -13.93421 -13.82602 -13.60468 -13.51825 -13.29396 -12.85277 -12.70225 -12.56436 -12.48184 -12.46164 -12.18964 -12.05254 -11.90606 -11.83016 -11.52725 -11.37582 -11.02396 -10.99870 -10.63194 -10.48939 -9.80641 -9.31282 -8.03534 -5.36374 0.19711 0.73608 1.11387 1.35871 1.39455 1.46665 1.60528 1.97624 2.47643 2.64338 2.91021 3.12068 3.28160 3.38041 3.45113 3.70884 3.78979 3.86617 3.98599 3.99888 4.08292 4.17512 4.19621 4.20361 4.23713 4.30932 4.42079 4.46162 4.48983 4.58787 4.63481 4.65815 4.73614 4.79185 4.85289 4.96910 4.97248 5.02985 5.06331 5.07675 5.13457 5.32744 5.38812 5.73368 6.02479 6.20126 6.66251 6.83988 7.06377 7.10118 7.82320 8.02106 9.17979 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.003152 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.830866 B = 8880.895816 C = 9261.469192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C 0.038 3.962 4 O 0.098 5.902 5 N -0.369 5.369 6 C 0.049 3.951 7 C -0.081 4.081 8 C -0.267 4.267 9 C 0.596 3.404 10 O -0.563 6.563 11 N -0.589 5.589 12 C 0.104 3.896 13 C -0.157 4.157 14 C 0.061 3.939 15 O -0.393 6.393 16 C 0.100 3.900 17 H 0.029 0.971 18 C 0.165 3.835 19 N -0.754 5.754 20 C -0.234 4.234 21 H 0.061 0.939 22 C -0.063 4.063 23 N -0.983 5.983 24 Si 0.956 3.044 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.261 1.261 28 C 0.091 3.909 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.102 0.898 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.366 0.634 46 H 0.259 0.741 47 H 0.088 0.912 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 -5.759 -31.571 33.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.025 4.025 4 O 0.038 5.962 5 N -0.076 5.076 6 C -0.113 4.113 7 C -0.139 4.139 8 C -0.274 4.274 9 C 0.383 3.617 10 O -0.441 6.441 11 N -0.320 5.320 12 C -0.017 4.017 13 C -0.195 4.195 14 C -0.015 4.015 15 O -0.312 6.312 16 C 0.039 3.961 17 H 0.047 0.953 18 C 0.039 3.961 19 N -0.399 5.399 20 C -0.365 4.365 21 H 0.079 0.921 22 C -0.254 4.254 23 N -0.633 5.633 24 Si 0.784 3.216 25 H -0.201 1.201 26 H -0.220 1.220 27 H -0.186 1.186 28 C -0.032 4.032 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.106 0.894 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.543 -5.347 -31.999 33.549 hybrid contribution 0.807 0.725 0.844 1.375 sum -7.736 -4.622 -31.155 32.432 Atomic orbital electron populations 1.21857 0.91250 1.04477 1.03038 1.20489 0.98318 0.83827 1.06177 1.25168 0.96369 0.96887 0.84103 1.84521 1.61319 1.17312 1.33061 1.73623 1.18141 0.99295 1.16586 1.25000 1.00264 0.96965 0.89024 1.20344 1.02649 0.91362 0.99504 1.21735 1.14759 0.96359 0.94558 1.17273 0.82372 0.77421 0.84615 1.90843 1.39393 1.45109 1.68776 1.47886 1.13081 1.60767 1.10289 1.22284 0.87819 0.97047 0.94500 1.22441 0.98702 0.98281 1.00054 1.22458 0.98262 0.97176 0.83555 1.86349 1.59241 1.52108 1.33516 1.21964 0.90591 0.88488 0.95016 0.95319 1.20749 0.98219 0.89798 0.87372 1.42561 1.84165 1.09323 1.03860 1.19071 1.37484 0.96566 0.83371 0.92125 1.25462 1.02341 1.01811 0.95783 1.69876 1.56184 1.31866 1.05410 0.85388 0.77807 0.80273 0.78166 1.20112 1.21968 1.18623 1.22269 1.04575 0.97490 0.78915 0.89123 0.92427 0.91008 0.86380 0.88919 0.89560 0.87982 0.90242 0.89717 0.88401 0.86521 0.89712 0.93809 0.88000 0.94099 0.94128 0.80116 0.93262 0.89365 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 71.98 0.71 -0.16 16 2 C -0.05 -0.48 6.38 29.85 0.19 -0.29 16 3 C 0.04 0.63 6.80 25.48 0.17 0.80 16 4 O 0.10 1.82 11.06 76.95 0.85 2.67 16 5 N -0.37 -7.90 12.01 -44.79 -0.54 -8.44 16 6 C 0.05 1.04 7.33 45.16 0.33 1.37 16 7 C -0.08 -1.44 10.49 71.24 0.75 -0.69 16 8 C -0.27 -5.61 4.17 -18.74 -0.08 -5.69 16 9 C 0.60 14.99 7.42 86.66 0.64 15.63 16 10 O -0.56 -19.28 16.53 -4.02 -0.07 -19.35 16 11 N -0.59 -12.08 2.19 -821.78 -1.80 -13.88 16 12 C 0.10 1.37 5.72 86.38 0.49 1.86 16 13 C -0.16 -2.10 5.78 30.30 0.18 -1.92 16 14 C 0.06 1.27 6.37 71.50 0.46 1.73 16 15 O -0.39 -11.96 9.18 -117.80 -1.08 -13.04 16 16 C 0.10 3.18 2.73 31.23 0.09 3.27 16 17 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 18 C 0.17 6.60 5.95 86.38 0.51 7.12 16 19 N -0.75 -37.65 5.29 -343.45 -1.82 -39.46 16 20 C -0.23 -13.94 10.47 84.03 0.88 -13.06 16 21 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 22 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 23 N -0.98 -64.54 13.97 21.65 0.30 -64.23 16 24 Si 0.96 47.62 27.74 68.60 1.90 49.53 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 27 H -0.26 -12.10 6.52 99.48 0.65 -11.45 16 28 C 0.09 2.22 4.87 87.27 0.42 2.64 16 29 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.06 0.40 6.18 -2.39 -0.01 0.38 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 1.08 8.11 -2.39 -0.02 1.06 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.08 1.43 6.71 -2.39 -0.02 1.41 16 37 H 0.08 1.08 6.13 -2.38 -0.01 1.07 16 38 H 0.10 0.84 6.57 -2.39 -0.02 0.82 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 1.24 8.01 -2.38 -0.02 1.22 16 41 H 0.04 0.93 5.96 -2.39 -0.01 0.92 16 42 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.37 17.90 5.39 -92.70 -0.50 17.40 16 46 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 47 H 0.09 2.36 7.27 -2.39 -0.02 2.34 16 48 H 0.11 2.23 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -80.00 384.83 4.39 -75.61 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.42 Total: 21.32 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.22 Total: 9.27 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -3.85 Total: -126.01 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.30 Total: -29.72 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.90 Total: 49.53 kcal Total: -80.00 4.39 -75.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202030922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.462 kcal (2) G-P(sol) polarization free energy of solvation -80.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds