Wall clock time and date at job start Tue Mar 31 2020 19:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99641 * 2 1 4 4 H 1.08993 * 110.64055 * 26.86435 * 3 2 1 5 5 C 1.54325 * 110.87431 * 263.61141 * 3 2 1 6 6 N 1.47015 * 107.27065 * 219.37607 * 5 3 2 7 7 C 1.36944 * 125.65004 * 178.98904 * 6 5 3 8 8 H 1.07997 * 120.00070 * 179.97438 * 7 6 5 9 9 C 1.38814 * 119.99655 * 359.97135 * 7 6 5 10 10 N 1.31617 * 120.00068 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00109 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46839 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47181 * 120.00043 * 11 9 7 14 14 H 1.48497 * 109.47665 * 240.00201 * 11 9 7 15 15 C 1.47425 * 108.70882 * 358.94051 * 6 5 3 16 16 C 1.54918 * 104.82827 * 24.12597 * 15 6 5 17 17 H 1.09000 * 110.99891 * 81.06585 * 16 15 6 18 18 N 1.46495 * 111.00632 * 204.91527 * 16 15 6 19 19 C 1.34777 * 120.00234 * 267.20315 * 18 16 15 20 20 O 1.21277 * 120.00065 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99842 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.46977 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47280 * 179.97438 * 22 21 19 24 24 C 1.50699 * 109.47228 * 179.97438 * 23 22 21 25 25 N 1.30254 * 125.62051 * 89.69349 * 24 23 22 26 26 C 1.34472 * 108.70268 * 179.83737 * 25 24 23 27 27 C 1.34334 * 107.66608 * 0.42212 * 26 25 24 28 28 C 1.50700 * 126.44282 * 179.76553 * 27 26 25 29 29 O 1.33966 * 125.61594 * 269.99860 * 24 23 22 30 30 H 1.08995 * 109.47534 * 59.99753 * 1 2 3 31 31 H 1.09002 * 109.46715 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47017 * 299.99308 * 1 2 3 33 33 H 1.09000 * 109.88274 * 338.79447 * 5 3 2 34 34 H 1.08997 * 109.87805 * 99.79987 * 5 3 2 35 35 H 0.97001 * 120.00422 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.36633 * 265.29871 * 15 6 5 37 37 H 1.08996 * 110.37033 * 142.96251 * 15 6 5 38 38 H 0.97000 * 119.99509 * 87.19464 * 18 16 15 39 39 H 1.09000 * 109.47081 * 299.99442 * 21 19 18 40 40 H 1.08994 * 109.47244 * 59.99523 * 21 19 18 41 41 H 1.09000 * 109.46909 * 299.99730 * 22 21 19 42 42 H 1.09001 * 109.47031 * 59.99857 * 22 21 19 43 43 H 1.09000 * 109.46852 * 300.00305 * 23 22 21 44 44 H 1.08997 * 109.47389 * 59.99361 * 23 22 21 45 45 H 1.08000 * 126.17136 * 180.16935 * 26 25 24 46 46 H 1.08996 * 109.47207 * 269.97327 * 28 27 26 47 47 H 1.09002 * 109.47045 * 29.97938 * 28 27 26 48 48 H 1.09000 * 109.47261 * 149.97481 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3804 1.7427 -1.4330 6 7 3.6667 2.4501 -1.3549 7 6 4.3514 2.9808 -2.4155 8 1 5.2929 3.4844 -2.2530 9 6 3.8353 2.8714 -3.6995 10 7 2.6878 2.2581 -3.8975 11 14 4.7695 3.5946 -5.1464 12 1 6.0228 4.2261 -4.6606 13 1 5.1013 2.5152 -6.1108 14 1 3.9277 4.6170 -5.8182 15 6 4.0971 2.4948 0.0544 16 6 3.3816 1.2958 0.7256 17 1 3.9172 0.3656 0.5363 18 7 3.2164 1.5209 2.1637 19 6 4.1467 1.0687 3.0278 20 8 5.1202 0.4750 2.6149 21 6 3.9764 1.2998 4.5072 22 6 5.1622 0.6908 5.2583 23 6 4.9897 0.9259 6.7602 24 6 6.1574 0.3256 7.5000 25 7 7.2713 0.9380 7.7842 26 6 8.0722 0.0886 8.4515 27 6 7.4212 -1.0809 8.5658 28 6 7.9342 -2.3292 9.2362 29 8 6.2229 -0.9277 7.9687 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.4774 0.8667 -2.0744 34 1 1.6122 2.4076 -1.8278 35 1 2.3273 2.1813 -4.7947 36 1 3.7840 3.4307 0.5172 37 1 5.1786 2.3789 0.1247 38 1 2.4376 1.9955 2.4940 39 1 3.9320 2.3708 4.7049 40 1 3.0528 0.8294 4.8445 41 1 5.2062 -0.3802 5.0605 42 1 6.0860 1.1609 4.9210 43 1 4.9459 1.9970 6.9576 44 1 4.0659 0.4563 7.0978 45 1 9.0622 0.3060 8.8244 46 1 8.4622 -2.9428 8.5063 47 1 8.6158 -2.0553 10.0416 48 1 7.0958 -2.8925 9.6458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212386380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:54 Heat of formation + Delta-G solvation = -39.387977 kcal Electronic energy + Delta-G solvation = -28580.002168 eV Core-core repulsion = 24444.528965 eV Total energy + Delta-G solvation = -4135.473203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.58085 -39.77405 -38.19827 -35.97518 -35.44303 -34.82311 -34.01520 -32.65557 -31.76475 -29.66406 -28.65626 -27.16893 -26.13120 -25.94442 -24.25856 -23.01373 -22.26818 -21.08968 -20.58447 -20.45790 -19.89609 -17.59911 -17.10689 -17.00965 -16.65599 -16.30321 -15.93599 -15.54262 -14.99133 -14.85388 -14.59067 -14.37818 -14.22929 -13.93987 -13.72650 -13.66642 -13.37710 -13.23845 -12.96385 -12.76995 -12.45726 -12.32097 -12.10874 -11.88218 -11.78146 -11.54006 -11.49751 -11.23321 -11.01111 -11.00875 -10.82224 -10.76168 -10.73213 -10.13104 -9.98990 -9.80452 -9.69802 -9.12934 -8.91798 -8.74340 -8.56387 -6.88554 -5.73195 -3.08178 1.15512 2.34649 2.43181 2.81961 3.29705 3.40727 3.46487 3.48952 3.77823 4.13693 4.41798 4.50175 4.59931 4.62576 4.67923 4.79715 4.91248 4.98175 5.07906 5.14441 5.18863 5.26522 5.28826 5.37402 5.41477 5.48503 5.56768 5.61712 5.64711 5.71693 5.73837 5.85203 5.87552 5.91342 6.02471 6.05892 6.10001 6.17625 6.54029 6.63651 6.87084 7.25610 7.48488 7.48754 7.69430 7.72426 7.86874 8.20454 8.43224 9.17853 9.77898 10.40920 11.38266 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.001980 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.938211 B =14139.687722 C =15231.575744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.062 0.938 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.106 0.894 18 N -0.717 5.717 19 C 0.511 3.489 20 O -0.538 6.538 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.023 4.023 24 C 0.195 3.805 25 N -0.480 5.480 26 C -0.043 4.043 27 C -0.054 4.054 28 C -0.068 4.068 29 O -0.201 6.201 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.252 0.748 36 H 0.023 0.977 37 H 0.049 0.951 38 H 0.396 0.604 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.182 0.818 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -5.420 26.394 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.026 3.974 17 H 0.124 0.876 18 N -0.368 5.368 19 C 0.297 3.703 20 O -0.414 6.414 21 C -0.179 4.179 22 C -0.140 4.140 23 C -0.061 4.061 24 C -0.011 4.011 25 N -0.209 5.209 26 C -0.182 4.182 27 C -0.107 4.107 28 C -0.125 4.125 29 O -0.088 6.088 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.112 0.888 45 H 0.199 0.801 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.612 -5.417 25.686 26.258 hybrid contribution -0.288 0.161 -0.476 0.579 sum 0.324 -5.256 25.210 25.754 Atomic orbital electron populations 1.22704 0.81795 1.02023 0.99711 1.87915 1.19029 1.27610 1.95034 1.23852 0.92994 0.84010 0.99508 0.91970 1.21542 0.88251 0.97197 0.89057 1.44265 1.21512 1.66291 1.00759 1.19130 1.02399 1.29259 0.84749 0.90078 1.24826 0.97455 1.00734 0.97428 1.69948 1.19268 1.47282 1.20492 0.86000 0.78808 0.78207 0.82488 1.20415 1.21682 1.21757 1.21826 0.97788 0.93834 0.86240 1.22394 0.96313 1.01036 0.77688 0.87603 1.45956 1.25015 1.58652 1.07136 1.20540 0.82754 0.78614 0.88371 1.90733 1.29900 1.41069 1.79726 1.21626 1.00481 1.03514 0.92231 1.21329 0.99032 1.02852 0.90832 1.20176 0.90967 1.01330 0.93649 1.26253 0.97330 0.79086 0.98456 1.70443 1.02054 1.33286 1.15120 1.23086 1.01820 0.89914 1.03349 1.23480 0.84927 0.99999 1.02286 1.20267 1.01258 0.91197 0.99731 1.84390 1.34885 1.33158 1.56397 0.93661 0.90279 0.94871 0.92009 0.93376 0.93717 0.95947 0.93224 0.77035 0.88448 0.88676 0.90565 0.90028 0.87394 0.88777 0.80062 0.89724 0.89015 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.92 10.44 -35.23 -0.37 -7.29 16 3 C 0.06 1.04 3.09 -24.90 -0.08 0.96 16 4 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 5 C 0.17 4.01 5.15 -3.07 -0.02 4.00 16 6 N -0.60 -15.53 3.39 -170.07 -0.58 -16.11 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 10 N -0.92 -27.11 10.31 55.49 0.57 -26.54 16 11 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.13 2.80 6.93 -2.52 -0.02 2.78 16 16 C 0.13 2.45 3.15 -65.78 -0.21 2.24 16 17 H 0.11 2.30 7.54 -51.93 -0.39 1.91 16 18 N -0.72 -10.01 5.20 -51.73 -0.27 -10.28 16 19 C 0.51 7.23 7.83 -10.99 -0.09 7.14 16 20 O -0.54 -10.19 15.62 5.56 0.09 -10.11 16 21 C -0.14 -1.20 5.70 -27.88 -0.16 -1.36 16 22 C -0.10 -1.00 4.49 -26.73 -0.12 -1.12 16 23 C -0.02 -0.18 5.84 -27.88 -0.16 -0.34 16 24 C 0.20 2.14 7.60 -12.95 -0.10 2.04 16 25 N -0.48 -5.91 11.29 -11.10 -0.13 -6.03 16 26 C -0.04 -0.43 11.80 -17.77 -0.21 -0.64 16 27 C -0.05 -0.50 7.39 -35.69 -0.26 -0.76 16 28 C -0.07 -0.33 10.43 36.01 0.38 0.05 16 29 O -0.20 -2.21 10.78 5.36 0.06 -2.16 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 33 H 0.06 1.72 7.30 -51.93 -0.38 1.34 16 34 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.40 4.15 8.57 -40.82 -0.35 3.80 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 400.57 15.07 6.04 6.04 Total: -1.00 -36.70 400.57 -7.60 -44.30 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.79 Total: 1.22 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.20 Total: 9.66 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.40 Total: -58.96 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.22 Total: -19.55 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.70 -7.60 -44.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212386380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.910 kcal (2) G-P(sol) polarization free energy of solvation -36.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds