Wall clock time and date at job start Tue Mar 31 2020 19:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99641 * 2 1 4 4 H 1.08993 * 110.64055 * 26.86435 * 3 2 1 5 5 C 1.54325 * 110.87431 * 263.61141 * 3 2 1 6 6 N 1.47015 * 107.27065 * 219.37607 * 5 3 2 7 7 C 1.36944 * 125.65004 * 178.98904 * 6 5 3 8 8 H 1.07997 * 120.00070 * 179.97438 * 7 6 5 9 9 C 1.38814 * 119.99655 * 359.97135 * 7 6 5 10 10 N 1.31617 * 120.00068 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00109 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46839 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47181 * 120.00043 * 11 9 7 14 14 H 1.48497 * 109.47665 * 240.00201 * 11 9 7 15 15 C 1.47425 * 108.70882 * 358.94051 * 6 5 3 16 16 C 1.54918 * 104.82827 * 24.12597 * 15 6 5 17 17 H 1.09000 * 110.99891 * 81.06585 * 16 15 6 18 18 N 1.46495 * 111.00632 * 204.91527 * 16 15 6 19 19 C 1.34777 * 120.00234 * 267.20315 * 18 16 15 20 20 O 1.21277 * 120.00065 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99842 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.46977 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47280 * 179.97438 * 22 21 19 24 24 C 1.50699 * 109.47228 * 179.97438 * 23 22 21 25 25 N 1.30254 * 125.62051 * 89.69349 * 24 23 22 26 26 C 1.34472 * 108.70268 * 179.83737 * 25 24 23 27 27 C 1.34334 * 107.66608 * 0.42212 * 26 25 24 28 28 C 1.50700 * 126.44282 * 179.76553 * 27 26 25 29 29 O 1.33966 * 125.61594 * 269.99860 * 24 23 22 30 30 H 1.08995 * 109.47534 * 59.99753 * 1 2 3 31 31 H 1.09002 * 109.46715 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47017 * 299.99308 * 1 2 3 33 33 H 1.09000 * 109.88274 * 338.79447 * 5 3 2 34 34 H 1.08997 * 109.87805 * 99.79987 * 5 3 2 35 35 H 0.97001 * 120.00422 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.36633 * 265.29871 * 15 6 5 37 37 H 1.08996 * 110.37033 * 142.96251 * 15 6 5 38 38 H 0.97000 * 119.99509 * 87.19464 * 18 16 15 39 39 H 1.09000 * 109.47081 * 299.99442 * 21 19 18 40 40 H 1.08994 * 109.47244 * 59.99523 * 21 19 18 41 41 H 1.09000 * 109.46909 * 299.99730 * 22 21 19 42 42 H 1.09001 * 109.47031 * 59.99857 * 22 21 19 43 43 H 1.09000 * 109.46852 * 300.00305 * 23 22 21 44 44 H 1.08997 * 109.47389 * 59.99361 * 23 22 21 45 45 H 1.08000 * 126.17136 * 180.16935 * 26 25 24 46 46 H 1.08996 * 109.47207 * 269.97327 * 28 27 26 47 47 H 1.09002 * 109.47045 * 29.97938 * 28 27 26 48 48 H 1.09000 * 109.47261 * 149.97481 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3804 1.7427 -1.4330 6 7 3.6667 2.4501 -1.3549 7 6 4.3514 2.9808 -2.4155 8 1 5.2929 3.4844 -2.2530 9 6 3.8353 2.8714 -3.6995 10 7 2.6878 2.2581 -3.8975 11 14 4.7695 3.5946 -5.1464 12 1 6.0228 4.2261 -4.6606 13 1 5.1013 2.5152 -6.1108 14 1 3.9277 4.6170 -5.8182 15 6 4.0971 2.4948 0.0544 16 6 3.3816 1.2958 0.7256 17 1 3.9172 0.3656 0.5363 18 7 3.2164 1.5209 2.1637 19 6 4.1467 1.0687 3.0278 20 8 5.1202 0.4750 2.6149 21 6 3.9764 1.2998 4.5072 22 6 5.1622 0.6908 5.2583 23 6 4.9897 0.9259 6.7602 24 6 6.1574 0.3256 7.5000 25 7 7.2713 0.9380 7.7842 26 6 8.0722 0.0886 8.4515 27 6 7.4212 -1.0809 8.5658 28 6 7.9342 -2.3292 9.2362 29 8 6.2229 -0.9277 7.9687 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.4774 0.8667 -2.0744 34 1 1.6122 2.4076 -1.8278 35 1 2.3273 2.1813 -4.7947 36 1 3.7840 3.4307 0.5172 37 1 5.1786 2.3789 0.1247 38 1 2.4376 1.9955 2.4940 39 1 3.9320 2.3708 4.7049 40 1 3.0528 0.8294 4.8445 41 1 5.2062 -0.3802 5.0605 42 1 6.0860 1.1609 4.9210 43 1 4.9459 1.9970 6.9576 44 1 4.0659 0.4563 7.0978 45 1 9.0622 0.3060 8.8244 46 1 8.4622 -2.9428 8.5063 47 1 8.6158 -2.0553 10.0416 48 1 7.0958 -2.8925 9.6458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212386380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:53 Heat of formation + Delta-G solvation = -68.679627 kcal Electronic energy + Delta-G solvation = -28581.272350 eV Core-core repulsion = 24444.528965 eV Total energy + Delta-G solvation = -4136.743385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.31167 -41.06994 -39.65940 -37.51872 -36.26887 -35.63979 -35.50806 -33.72310 -33.20020 -30.84691 -30.03089 -28.71460 -27.51674 -26.78343 -25.92663 -23.94703 -23.04075 -22.26625 -21.99894 -21.75266 -21.20778 -19.15441 -18.35326 -17.95127 -17.70253 -17.53799 -17.19443 -16.77916 -16.49510 -15.86393 -15.80276 -15.58471 -15.46025 -15.11306 -14.90774 -14.79414 -14.43964 -14.14761 -14.06342 -13.89754 -13.62302 -13.30131 -13.22396 -13.16251 -13.01129 -12.80493 -12.79496 -12.59496 -12.47985 -12.30162 -12.29047 -12.04452 -11.88516 -11.72516 -11.62624 -11.53455 -10.95724 -10.79405 -10.55800 -10.04212 -9.60801 -8.97559 -7.88910 -5.26993 0.44187 1.44289 1.46157 1.56460 1.64893 1.71420 1.73267 2.14539 2.45793 2.78901 3.13205 3.30433 3.54912 3.67570 3.84096 3.88862 3.93687 4.01457 4.04561 4.10891 4.14072 4.32365 4.37378 4.43967 4.47887 4.61398 4.64690 4.65728 4.66669 4.67935 4.72568 4.82512 4.83448 4.88968 5.03040 5.07624 5.13095 5.20739 5.28500 5.34079 5.37681 5.38806 5.51511 5.65496 6.12698 6.33279 6.63009 6.74569 7.03762 7.35507 7.68769 8.31121 9.20662 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.001980 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.938211 B =14139.687722 C =15231.575744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.077 3.923 4 H 0.100 0.900 5 C 0.174 3.826 6 N -0.623 5.623 7 C -0.246 4.246 8 H 0.082 0.918 9 C -0.064 4.064 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.267 1.267 13 H -0.293 1.293 14 H -0.286 1.286 15 C 0.131 3.869 16 C 0.149 3.851 17 H 0.069 0.931 18 N -0.702 5.702 19 C 0.505 3.495 20 O -0.594 6.594 21 C -0.123 4.123 22 C -0.096 4.096 23 C -0.015 4.015 24 C 0.180 3.820 25 N -0.514 5.514 26 C -0.067 4.067 27 C -0.056 4.056 28 C -0.067 4.067 29 O -0.215 6.215 30 H 0.034 0.966 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.014 0.986 34 H 0.023 0.977 35 H 0.249 0.751 36 H 0.046 0.954 37 H 0.031 0.969 38 H 0.419 0.581 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.203 0.797 46 H 0.092 0.908 47 H 0.115 0.885 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -4.855 29.154 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.118 0.882 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.374 4.374 8 H 0.100 0.900 9 C -0.257 4.257 10 N -0.597 5.597 11 Si 0.809 3.191 12 H -0.191 1.191 13 H -0.220 1.220 14 H -0.213 1.213 15 C 0.004 3.996 16 C 0.041 3.959 17 H 0.087 0.913 18 N -0.354 5.354 19 C 0.294 3.706 20 O -0.474 6.474 21 C -0.162 4.162 22 C -0.135 4.135 23 C -0.053 4.053 24 C -0.026 4.026 25 N -0.244 5.244 26 C -0.205 4.205 27 C -0.109 4.109 28 C -0.123 4.123 29 O -0.103 6.103 30 H 0.052 0.948 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.257 0.743 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.219 0.781 46 H 0.111 0.889 47 H 0.133 0.867 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.648 -4.835 28.510 28.924 hybrid contribution 0.136 -0.082 -1.303 1.313 sum -0.511 -4.917 27.207 27.652 Atomic orbital electron populations 1.22994 0.79281 1.03851 1.00843 1.87900 1.21819 1.27096 1.94918 1.23498 0.93727 0.85255 0.95724 0.88201 1.21286 0.87160 0.94573 0.92183 1.44538 1.22150 1.66198 1.02151 1.19486 1.02739 1.29248 0.85972 0.89987 1.25689 0.98507 1.01506 1.00007 1.70168 1.20596 1.48372 1.20608 0.84967 0.77971 0.77249 0.78864 1.19113 1.22025 1.21301 1.21947 0.97073 0.95981 0.84604 1.21773 0.95440 0.98046 0.80596 0.91262 1.45714 1.26095 1.58808 1.04766 1.21619 0.81413 0.76975 0.90553 1.90724 1.32234 1.43480 1.80977 1.21664 1.01386 1.06002 0.87125 1.21197 0.98400 1.01210 0.92685 1.20290 0.91071 1.02570 0.91354 1.26908 0.97935 0.79153 0.98652 1.70415 1.03087 1.34630 1.16234 1.23541 1.02823 0.90222 1.03917 1.24274 0.84157 1.01139 1.01305 1.20484 1.01944 0.89594 1.00275 1.84396 1.35793 1.33366 1.56733 0.94752 0.88275 0.91384 0.96756 0.95907 0.94199 0.93605 0.95080 0.74292 0.84943 0.84606 0.92793 0.93191 0.85567 0.85722 0.78053 0.88935 0.86655 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.26 10.44 -148.98 -1.56 -15.82 16 3 C 0.08 2.84 3.09 31.78 0.10 2.93 16 4 H 0.10 2.93 7.68 -2.39 -0.02 2.91 16 5 C 0.17 8.74 5.15 86.73 0.45 9.19 16 6 N -0.62 -33.15 3.39 -691.99 -2.35 -35.50 16 7 C -0.25 -14.24 10.28 84.03 0.86 -13.38 16 8 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 9 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 10 N -0.95 -57.80 10.31 21.65 0.22 -57.57 16 11 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 C 0.13 5.63 6.93 86.86 0.60 6.24 16 16 C 0.15 5.53 3.15 46.39 0.15 5.67 16 17 H 0.07 3.13 7.54 -2.39 -0.02 3.11 16 18 N -0.70 -17.92 5.20 -435.97 -2.27 -20.18 16 19 C 0.51 13.46 7.83 87.66 0.69 14.15 16 20 O -0.59 -22.98 15.62 -3.02 -0.05 -23.03 16 21 C -0.12 -1.67 5.70 29.85 0.17 -1.50 16 22 C -0.10 -1.76 4.49 30.60 0.14 -1.62 16 23 C -0.02 -0.20 5.84 29.85 0.17 -0.02 16 24 C 0.18 3.80 7.60 88.34 0.67 4.47 16 25 N -0.51 -12.57 11.29 -303.83 -3.43 -16.00 16 26 C -0.07 -1.33 11.80 83.40 0.98 -0.34 16 27 C -0.06 -0.99 7.39 24.79 0.18 -0.80 16 28 C -0.07 -0.53 10.43 71.24 0.74 0.21 16 29 O -0.22 -4.60 10.78 -3.73 -0.04 -4.64 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 33 H 0.01 0.84 7.30 -2.39 -0.02 0.82 16 34 H 0.02 1.24 7.50 -2.39 -0.02 1.22 16 35 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.42 6.93 8.57 -92.71 -0.79 6.13 16 39 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.20 2.72 8.06 -2.91 -0.02 2.69 16 46 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -87.22 400.57 0.33 -86.89 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.17 Total: 13.20 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 7.60 Total: 23.83 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -7.82 Total: -129.26 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -1.64 Total: -43.48 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -87.22 0.33 -86.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212386380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.207 kcal (2) G-P(sol) polarization free energy of solvation -87.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds