Wall clock time and date at job start Tue Mar 31 2020 21:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47099 * 120.00366 * 2 1 4 4 O 1.21610 * 120.00519 * 179.97438 * 3 2 1 5 5 N 1.34784 * 119.99647 * 0.02562 * 3 2 1 6 6 C 1.46502 * 119.99435 * 179.97438 * 5 3 2 7 7 H 1.08993 * 110.29242 * 32.87782 * 6 5 3 8 8 C 1.54380 * 110.32279 * 270.63116 * 6 5 3 9 9 N 1.48558 * 104.59430 * 217.25528 * 8 6 5 10 10 C 1.46905 * 110.99768 * 159.04519 * 9 8 6 11 11 C 1.50696 * 109.47024 * 174.70840 * 10 9 8 12 12 O 1.21298 * 120.00039 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99969 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00106 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99586 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00300 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99972 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00245 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47035 * 90.00402 * 18 16 14 20 20 H 1.48497 * 109.47245 * 210.00306 * 18 16 14 21 21 H 1.48501 * 109.47252 * 330.00411 * 18 16 14 22 22 C 1.48556 * 104.22328 * 39.48950 * 9 8 6 23 23 C 1.54264 * 110.31941 * 155.00266 * 6 5 3 24 24 H 1.08997 * 110.32228 * 237.79297 * 23 6 5 25 25 O 1.42905 * 110.32519 * 359.89351 * 23 6 5 26 26 C 1.32994 * 120.00173 * 180.02562 * 2 1 3 27 27 C 1.51401 * 136.32112 * 179.63195 * 26 2 1 28 28 C 1.53374 * 87.52176 * 206.05300 * 27 26 2 29 29 C 1.51415 * 136.31346 * 0.02562 * 26 2 1 30 30 H 1.08999 * 109.47280 * 269.99994 * 1 2 3 31 31 H 1.08997 * 109.47027 * 29.99954 * 1 2 3 32 32 H 1.09000 * 109.47497 * 150.00188 * 1 2 3 33 33 H 0.96999 * 120.00044 * 0.02562 * 5 3 2 34 34 H 1.08999 * 110.41405 * 336.03896 * 8 6 5 35 35 H 1.09004 * 110.40900 * 98.47691 * 8 6 5 36 36 H 1.09001 * 109.47030 * 294.70487 * 10 9 8 37 37 H 1.09000 * 109.47356 * 54.70730 * 10 9 8 38 38 H 0.97000 * 119.99933 * 359.97438 * 13 11 10 39 39 H 0.96997 * 120.00242 * 179.97438 * 17 16 14 40 40 H 1.08996 * 110.41275 * 201.73611 * 22 9 8 41 41 H 1.08992 * 110.51502 * 79.34182 * 22 9 8 42 42 H 0.96701 * 114.00332 * 180.02562 * 25 23 6 43 43 H 1.09003 * 113.56088 * 320.63439 * 27 26 2 44 44 H 1.09003 * 113.56626 * 91.36691 * 27 26 2 45 45 H 1.08994 * 113.97269 * 220.28593 * 28 27 26 46 46 H 1.09008 * 113.60081 * 88.79085 * 28 27 26 47 47 H 1.09004 * 113.55552 * 268.62980 * 29 26 2 48 48 H 1.08993 * 113.55782 * 39.35855 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3012 3.7098 0.0011 7 1 3.2337 3.6080 -0.5539 8 6 2.5832 4.1655 1.4489 9 7 2.4308 5.6428 1.4128 10 6 2.1764 6.1788 2.7567 11 6 2.1568 7.6846 2.7015 12 8 2.3376 8.2552 1.6465 13 7 1.9386 8.3973 3.8244 14 6 1.9213 9.7673 3.7743 15 1 2.0823 10.2754 2.8349 16 6 1.6958 10.5021 4.9318 17 7 1.4994 9.8839 6.0747 18 14 1.6730 12.3687 4.8637 19 1 0.2899 12.8373 4.5938 20 1 2.1368 12.9172 6.1634 21 1 2.5742 12.8355 3.7796 22 6 1.2646 5.8677 0.5204 23 6 1.4337 4.8297 -0.6097 24 1 1.9413 5.2787 -1.4634 25 8 0.1618 4.3122 -1.0056 26 6 2.1719 -1.1517 -0.0005 27 6 3.6249 -1.5772 -0.0074 28 6 3.1708 -2.8815 -0.6743 29 6 1.8137 -2.6229 -0.0016 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 0.5986 2.4411 0.0013 34 1 1.8587 3.7252 2.1340 35 1 3.5977 3.8950 1.7418 36 1 1.2135 5.8159 3.1163 37 1 2.9645 5.8502 3.4341 38 1 1.7936 7.9410 4.6680 39 1 1.3423 10.3968 6.8829 40 1 1.2862 6.8789 0.1141 41 1 0.3328 5.6951 1.0587 42 1 -0.4267 4.9720 -1.3973 43 1 4.2566 -0.9600 -0.6464 44 1 4.0420 -1.7197 0.9895 45 1 3.6834 -3.7696 -0.3049 46 1 3.1398 -2.8275 -1.7626 47 1 1.7335 -3.0525 0.9970 48 1 0.9604 -2.8630 -0.6357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219575085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:10 Heat of formation + Delta-G solvation = -67.385865 kcal Electronic energy + Delta-G solvation = -29092.037204 eV Core-core repulsion = 24955.349921 eV Total energy + Delta-G solvation = -4136.687283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.44594 -39.41969 -38.39121 -37.74048 -35.80815 -34.41837 -33.86964 -33.18797 -31.28308 -30.11916 -28.01671 -26.88387 -26.50048 -25.79897 -24.34323 -23.32197 -21.50826 -21.12154 -20.39751 -19.21821 -18.55338 -17.89667 -17.51884 -16.76578 -16.11376 -16.01699 -15.88400 -15.47241 -15.01289 -14.82089 -14.80501 -14.44747 -14.06354 -13.97002 -13.58344 -13.44826 -13.29113 -12.92218 -12.85390 -12.77186 -12.68686 -12.25863 -12.11341 -12.03203 -11.85795 -11.54078 -11.44393 -11.32715 -11.26635 -11.09278 -10.86579 -10.75631 -10.40186 -10.23277 -10.08647 -9.78086 -9.50648 -9.23063 -8.97951 -8.56727 -8.07727 -7.96461 -6.42678 -3.83632 1.14659 2.93846 3.16520 3.16709 3.25599 3.31577 3.82255 3.88937 4.11338 4.13524 4.23925 4.32018 4.42347 4.58899 4.61115 4.72401 4.78342 4.99281 5.08143 5.14074 5.23422 5.24383 5.28864 5.31927 5.33834 5.42117 5.45368 5.46004 5.58591 5.65828 5.76148 5.77731 5.83938 5.91135 5.92979 5.99338 6.05745 6.22638 6.24027 6.37106 6.43305 6.97361 7.10180 7.42784 7.54063 7.54686 8.04694 8.21255 8.60323 9.16827 9.53023 10.04600 10.75064 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.001980 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.839620 B =14136.098518 C =14505.526758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.164 4.164 3 C 0.555 3.445 4 O -0.543 6.543 5 N -0.706 5.706 6 C 0.152 3.848 7 H 0.106 0.894 8 C 0.020 3.980 9 N -0.478 5.478 10 C 0.036 3.964 11 C 0.445 3.555 12 O -0.579 6.579 13 N -0.564 5.564 14 C -0.299 4.299 15 H 0.103 0.897 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 0.930 3.070 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.006 3.994 23 C 0.093 3.907 24 H 0.079 0.921 25 O -0.568 6.568 26 C -0.073 4.073 27 C -0.102 4.102 28 C -0.143 4.143 29 C -0.105 4.105 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.409 0.591 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.105 0.895 41 H 0.050 0.950 42 H 0.386 0.614 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 -23.825 -11.155 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.167 4.167 3 C 0.344 3.656 4 O -0.421 6.421 5 N -0.359 5.359 6 C 0.046 3.954 7 H 0.124 0.876 8 C -0.109 4.109 9 N -0.203 5.203 10 C -0.096 4.096 11 C 0.230 3.770 12 O -0.463 6.463 13 N -0.201 5.201 14 C -0.428 4.428 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.122 4.122 23 C 0.033 3.967 24 H 0.097 0.903 25 O -0.374 6.374 26 C -0.074 4.074 27 C -0.139 4.139 28 C -0.180 4.180 29 C -0.142 4.142 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.247 0.753 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.068 0.932 42 H 0.235 0.765 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.118 0.882 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.328 -23.605 -11.642 26.423 hybrid contribution -1.597 0.930 0.899 2.055 sum -3.926 -22.675 -10.743 25.397 Atomic orbital electron populations 1.20682 0.90510 1.02962 1.02523 1.20440 0.95854 0.91259 1.09155 1.18278 0.87221 0.83885 0.76235 1.90773 1.13471 1.87669 1.50232 1.45712 1.11092 1.04475 1.74668 1.21725 0.95611 0.81856 0.96192 0.87603 1.23613 1.02492 0.89006 0.95833 1.65114 1.37029 1.08678 1.09432 1.22073 1.00883 0.95915 0.90731 1.19659 0.84440 0.87705 0.85173 1.90496 1.54498 1.71490 1.29797 1.41858 1.62550 1.07019 1.08655 1.19693 1.45832 0.80995 0.96288 0.87906 1.25268 0.97275 1.00729 0.94726 1.69613 1.48879 1.36624 0.99190 0.85852 0.78569 0.82183 0.77645 1.20456 1.20917 1.19402 1.23910 0.92680 1.01221 0.94432 1.22870 0.84211 0.92895 0.96691 0.90337 1.86246 1.27030 1.40685 1.83418 1.23238 0.98154 0.93669 0.92371 1.22169 0.94011 0.95817 1.01892 1.22724 0.96648 0.98254 1.00367 1.22286 0.98486 0.91659 1.01745 0.91025 0.91335 0.91316 0.75263 0.93337 0.89165 0.93143 0.89027 0.77492 0.91869 0.87651 0.93219 0.76538 0.89592 0.88550 0.90474 0.89825 0.88242 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.57 36.00 0.34 -0.46 16 2 C -0.16 -1.68 6.00 -102.85 -0.62 -2.29 16 3 C 0.56 7.18 7.75 -12.66 -0.10 7.08 16 4 O -0.54 -8.66 14.80 5.27 0.08 -8.58 16 5 N -0.71 -8.29 4.79 -53.64 -0.26 -8.55 16 6 C 0.15 1.98 3.41 -66.54 -0.23 1.75 16 7 H 0.11 1.50 7.56 -51.93 -0.39 1.10 16 8 C 0.02 0.28 6.20 -2.18 -0.01 0.27 16 9 N -0.48 -8.03 5.06 -231.42 -1.17 -9.21 16 10 C 0.04 0.65 5.30 -4.98 -0.03 0.62 16 11 C 0.45 10.47 7.58 -10.99 -0.08 10.38 16 12 O -0.58 -15.40 14.42 5.54 0.08 -15.32 16 13 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 14 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 15 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 17 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 18 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.01 0.09 5.54 -2.19 -0.01 0.08 16 23 C 0.09 1.12 4.42 -25.35 -0.11 1.01 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 O -0.57 -5.52 11.53 -35.23 -0.41 -5.93 16 26 C -0.07 -0.68 6.60 -100.48 -0.66 -1.35 16 27 C -0.10 -0.94 6.99 -27.56 -0.19 -1.13 16 28 C -0.14 -0.93 8.17 -26.21 -0.21 -1.14 16 29 C -0.10 -0.67 7.71 -27.41 -0.21 -0.88 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.48 6.70 -51.93 -0.35 0.13 16 32 H 0.07 0.41 7.83 -51.93 -0.41 0.01 16 33 H 0.41 4.25 5.37 -40.82 -0.22 4.04 16 34 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.09 1.54 8.13 -51.93 -0.42 1.11 16 38 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.11 1.84 6.91 -51.93 -0.36 1.49 16 41 H 0.05 0.73 7.77 -51.93 -0.40 0.33 16 42 H 0.39 2.38 9.12 45.56 0.42 2.80 16 43 H 0.09 0.95 7.49 -51.93 -0.39 0.56 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -33.40 391.32 -9.06 -42.46 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -6.56 Total: 15.38 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.37 Total: 5.99 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.76 Total: -55.87 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.25 Total: -29.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.40 -9.06 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219575085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.926 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds