Wall clock time and date at job start Tue Mar 31 2020 21:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47099 * 120.00366 * 2 1 4 4 O 1.21610 * 120.00519 * 179.97438 * 3 2 1 5 5 N 1.34784 * 119.99647 * 0.02562 * 3 2 1 6 6 C 1.46502 * 119.99435 * 179.97438 * 5 3 2 7 7 H 1.08993 * 110.29242 * 32.87782 * 6 5 3 8 8 C 1.54380 * 110.32279 * 270.63116 * 6 5 3 9 9 N 1.48558 * 104.59430 * 217.25528 * 8 6 5 10 10 C 1.46905 * 110.99768 * 159.04519 * 9 8 6 11 11 C 1.50696 * 109.47024 * 174.70840 * 10 9 8 12 12 O 1.21298 * 120.00039 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99969 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00106 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99586 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00300 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99972 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00245 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47035 * 90.00402 * 18 16 14 20 20 H 1.48497 * 109.47245 * 210.00306 * 18 16 14 21 21 H 1.48501 * 109.47252 * 330.00411 * 18 16 14 22 22 C 1.48556 * 104.22328 * 39.48950 * 9 8 6 23 23 C 1.54264 * 110.31941 * 155.00266 * 6 5 3 24 24 H 1.08997 * 110.32228 * 237.79297 * 23 6 5 25 25 O 1.42905 * 110.32519 * 359.89351 * 23 6 5 26 26 C 1.32994 * 120.00173 * 180.02562 * 2 1 3 27 27 C 1.51401 * 136.32112 * 179.63195 * 26 2 1 28 28 C 1.53374 * 87.52176 * 206.05300 * 27 26 2 29 29 C 1.51415 * 136.31346 * 0.02562 * 26 2 1 30 30 H 1.08999 * 109.47280 * 269.99994 * 1 2 3 31 31 H 1.08997 * 109.47027 * 29.99954 * 1 2 3 32 32 H 1.09000 * 109.47497 * 150.00188 * 1 2 3 33 33 H 0.96999 * 120.00044 * 0.02562 * 5 3 2 34 34 H 1.08999 * 110.41405 * 336.03896 * 8 6 5 35 35 H 1.09004 * 110.40900 * 98.47691 * 8 6 5 36 36 H 1.09001 * 109.47030 * 294.70487 * 10 9 8 37 37 H 1.09000 * 109.47356 * 54.70730 * 10 9 8 38 38 H 0.97000 * 119.99933 * 359.97438 * 13 11 10 39 39 H 0.96997 * 120.00242 * 179.97438 * 17 16 14 40 40 H 1.08996 * 110.41275 * 201.73611 * 22 9 8 41 41 H 1.08992 * 110.51502 * 79.34182 * 22 9 8 42 42 H 0.96701 * 114.00332 * 180.02562 * 25 23 6 43 43 H 1.09003 * 113.56088 * 320.63439 * 27 26 2 44 44 H 1.09003 * 113.56626 * 91.36691 * 27 26 2 45 45 H 1.08994 * 113.97269 * 220.28593 * 28 27 26 46 46 H 1.09008 * 113.60081 * 88.79085 * 28 27 26 47 47 H 1.09004 * 113.55552 * 268.62980 * 29 26 2 48 48 H 1.08993 * 113.55782 * 39.35855 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3012 3.7098 0.0011 7 1 3.2337 3.6080 -0.5539 8 6 2.5832 4.1655 1.4489 9 7 2.4308 5.6428 1.4128 10 6 2.1764 6.1788 2.7567 11 6 2.1568 7.6846 2.7015 12 8 2.3376 8.2552 1.6465 13 7 1.9386 8.3973 3.8244 14 6 1.9213 9.7673 3.7743 15 1 2.0823 10.2754 2.8349 16 6 1.6958 10.5021 4.9318 17 7 1.4994 9.8839 6.0747 18 14 1.6730 12.3687 4.8637 19 1 0.2899 12.8373 4.5938 20 1 2.1368 12.9172 6.1634 21 1 2.5742 12.8355 3.7796 22 6 1.2646 5.8677 0.5204 23 6 1.4337 4.8297 -0.6097 24 1 1.9413 5.2787 -1.4634 25 8 0.1618 4.3122 -1.0056 26 6 2.1719 -1.1517 -0.0005 27 6 3.6249 -1.5772 -0.0074 28 6 3.1708 -2.8815 -0.6743 29 6 1.8137 -2.6229 -0.0016 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 0.5986 2.4411 0.0013 34 1 1.8587 3.7252 2.1340 35 1 3.5977 3.8950 1.7418 36 1 1.2135 5.8159 3.1163 37 1 2.9645 5.8502 3.4341 38 1 1.7936 7.9410 4.6680 39 1 1.3423 10.3968 6.8829 40 1 1.2862 6.8789 0.1141 41 1 0.3328 5.6951 1.0587 42 1 -0.4267 4.9720 -1.3973 43 1 4.2566 -0.9600 -0.6464 44 1 4.0420 -1.7197 0.9895 45 1 3.6834 -3.7696 -0.3049 46 1 3.1398 -2.8275 -1.7626 47 1 1.7335 -3.0525 0.9970 48 1 0.9604 -2.8630 -0.6357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219575085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:09 Heat of formation + Delta-G solvation = -94.183889 kcal Electronic energy + Delta-G solvation = -29093.199254 eV Core-core repulsion = 24955.349921 eV Total energy + Delta-G solvation = -4137.849332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47166 -40.54024 -39.68990 -38.91625 -36.90711 -35.92761 -35.37324 -33.97954 -33.29176 -31.36879 -29.15575 -28.07718 -27.46843 -26.40438 -26.07399 -24.18094 -22.77608 -21.97999 -21.39745 -21.00867 -19.90354 -19.38743 -18.50225 -17.80380 -17.54111 -17.02267 -16.70803 -16.60372 -16.45260 -16.30191 -15.89822 -15.75101 -15.57724 -15.08841 -14.86998 -14.66869 -14.27716 -14.08988 -13.93256 -13.69484 -13.45302 -13.34263 -13.27333 -13.23909 -12.97178 -12.87652 -12.58570 -12.56421 -12.42346 -12.41725 -12.13578 -12.04638 -11.87543 -11.49092 -11.42634 -11.06501 -10.69214 -10.38520 -10.18612 -10.02137 -9.74637 -9.49531 -8.47201 -5.96012 0.36543 1.37379 1.41430 1.54204 1.97671 2.03095 2.24149 2.28747 2.75946 3.10725 3.18771 3.29664 3.45015 3.47036 3.59823 3.73929 3.84088 4.00230 4.02242 4.15834 4.24410 4.25403 4.33142 4.38823 4.43353 4.47553 4.60957 4.72840 4.75817 4.78469 4.83944 4.85673 4.87482 4.96485 4.97811 5.05643 5.09583 5.35261 5.37001 5.39712 5.40520 5.71853 5.73812 5.78190 6.02435 6.58932 6.60267 6.75418 7.11720 7.26708 7.54518 8.09776 8.70240 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.001980 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.839620 B =14136.098518 C =14505.526758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.182 4.182 3 C 0.548 3.452 4 O -0.582 6.582 5 N -0.695 5.695 6 C 0.154 3.846 7 H 0.092 0.908 8 C 0.028 3.972 9 N -0.500 5.500 10 C 0.048 3.952 11 C 0.444 3.556 12 O -0.613 6.613 13 N -0.574 5.574 14 C -0.331 4.331 15 H 0.080 0.920 16 C -0.014 4.014 17 N -0.921 5.921 18 Si 0.994 3.006 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.273 1.273 22 C 0.010 3.990 23 C 0.112 3.888 24 H 0.084 0.916 25 O -0.563 6.563 26 C -0.080 4.080 27 C -0.116 4.116 28 C -0.133 4.133 29 C -0.092 4.092 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.418 0.582 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.404 0.596 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 -25.569 -11.143 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.338 3.662 4 O -0.464 6.464 5 N -0.349 5.349 6 C 0.047 3.953 7 H 0.110 0.890 8 C -0.101 4.101 9 N -0.225 5.225 10 C -0.084 4.084 11 C 0.231 3.769 12 O -0.499 6.499 13 N -0.211 5.211 14 C -0.461 4.461 15 H 0.098 0.902 16 C -0.214 4.214 17 N -0.562 5.562 18 Si 0.817 3.183 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.198 1.198 22 C -0.119 4.119 23 C 0.051 3.949 24 H 0.102 0.898 25 O -0.371 6.371 26 C -0.082 4.082 27 C -0.153 4.153 28 C -0.170 4.170 29 C -0.128 4.128 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.258 0.742 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.256 0.744 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.134 0.866 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.950 -25.366 -11.631 28.184 hybrid contribution -1.061 1.430 0.854 1.974 sum -5.011 -23.936 -10.778 26.725 Atomic orbital electron populations 1.20697 0.88215 1.03866 1.03292 1.20551 0.97340 0.89990 1.10572 1.18851 0.86983 0.85002 0.75363 1.90753 1.15245 1.88249 1.52160 1.45617 1.11362 1.03769 1.74116 1.21559 0.95601 0.82794 0.95324 0.88979 1.23542 1.02412 0.87264 0.96880 1.65025 1.38183 1.10399 1.08874 1.21927 1.02640 0.91697 0.92122 1.20588 0.82348 0.89949 0.84034 1.90473 1.55489 1.72980 1.30963 1.41921 1.63295 1.06530 1.09357 1.19661 1.47998 0.82428 0.96007 0.90177 1.26055 0.96261 1.05003 0.94071 1.69676 1.48677 1.38227 0.99607 0.84915 0.78757 0.76766 0.77817 1.19510 1.19653 1.19816 1.23833 0.92298 1.00640 0.95123 1.22545 0.85207 0.91435 0.95679 0.89842 1.86215 1.26301 1.41235 1.83395 1.23700 0.98437 0.95271 0.90796 1.22281 0.93882 0.97314 1.01820 1.22710 0.96724 0.97259 1.00324 1.22323 0.98827 0.88801 1.02889 0.90235 0.91172 0.89663 0.74232 0.92333 0.89849 0.90974 0.87496 0.77077 0.91316 0.90502 0.92719 0.74417 0.92378 0.88443 0.88688 0.89737 0.86619 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.57 71.23 0.68 -0.58 16 2 C -0.18 -3.49 6.00 -18.71 -0.11 -3.61 16 3 C 0.55 14.04 7.75 86.57 0.67 14.71 16 4 O -0.58 -19.15 14.80 -4.06 -0.06 -19.21 16 5 N -0.70 -15.69 4.79 -441.88 -2.12 -17.81 16 6 C 0.15 3.94 3.41 45.89 0.16 4.10 16 7 H 0.09 2.65 7.56 -2.39 -0.02 2.64 16 8 C 0.03 0.78 6.20 86.45 0.54 1.32 16 9 N -0.50 -16.70 5.06 -886.07 -4.49 -21.19 16 10 C 0.05 1.70 5.30 85.55 0.45 2.16 16 11 C 0.44 21.21 7.58 87.66 0.66 21.88 16 12 O -0.61 -33.59 14.42 -3.08 -0.04 -33.63 16 13 N -0.57 -29.55 5.29 -306.98 -1.62 -31.18 16 14 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 15 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 16 C -0.01 -0.76 5.50 84.92 0.47 -0.30 16 17 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 18 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.01 0.28 5.54 86.45 0.48 0.76 16 23 C 0.11 2.59 4.42 31.49 0.14 2.73 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 O -0.56 -9.80 11.53 -148.98 -1.72 -11.52 16 26 C -0.08 -1.41 6.60 -17.17 -0.11 -1.52 16 27 C -0.12 -2.10 6.99 30.06 0.21 -1.89 16 28 C -0.13 -1.48 8.17 30.93 0.25 -1.22 16 29 C -0.09 -0.91 7.71 30.15 0.23 -0.68 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.81 6.70 -2.39 -0.02 0.80 16 32 H 0.08 0.75 7.83 -2.39 -0.02 0.74 16 33 H 0.42 7.94 5.37 -92.71 -0.50 7.44 16 34 H 0.06 1.52 7.91 -2.39 -0.02 1.50 16 35 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.07 2.28 7.88 -2.39 -0.02 2.26 16 37 H 0.11 3.49 8.13 -2.39 -0.02 3.47 16 38 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 39 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.08 2.76 6.91 -2.39 -0.02 2.74 16 41 H 0.05 1.56 7.77 -2.39 -0.02 1.54 16 42 H 0.40 4.06 9.12 -74.06 -0.68 3.39 16 43 H 0.06 1.36 7.49 -2.39 -0.02 1.34 16 44 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.09 0.66 8.06 -2.39 -0.02 0.64 16 Total: -1.00 -73.81 391.32 -3.10 -76.91 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: -0.89 Total: 42.33 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 5.53 Total: 19.86 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -7.94 Total: -119.69 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -1.82 Total: -64.36 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -73.81 -3.10 -76.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219575085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.271 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds