Wall clock time and date at job start Tue Mar 31 2020 19:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34330 * 126.43789 * 2 1 4 4 N 1.34476 * 107.66539 * 180.02562 * 3 2 1 5 5 C 1.30262 * 108.70111 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.61798 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.47104 * 90.02208 * 6 5 4 8 8 C 1.42894 * 113.99890 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47594 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99222 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00152 * 179.72324 * 11 9 8 13 13 C 1.52999 * 109.47465 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.58573 * 60.09052 * 13 12 11 15 15 C 1.53196 * 109.58717 * 180.52071 * 13 12 11 16 16 C 1.53035 * 109.31168 * 174.41805 * 15 13 12 17 17 C 1.53041 * 109.54349 * 298.63591 * 16 15 13 18 18 C 1.53195 * 109.31015 * 61.36187 * 17 16 15 19 19 N 1.46924 * 108.77978 * 305.36803 * 18 17 16 20 20 C 1.36935 * 120.63203 * 233.63388 * 19 18 17 21 21 H 1.08005 * 119.99874 * 148.81310 * 20 19 18 22 22 C 1.38809 * 120.00021 * 328.80387 * 20 19 18 23 23 N 1.31621 * 120.00102 * 346.31424 * 22 20 19 24 24 Si 1.86800 * 120.00179 * 166.30904 * 22 20 19 25 25 H 1.48506 * 109.47093 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47226 * 120.00070 * 24 22 20 27 27 H 1.48497 * 109.47358 * 240.00556 * 24 22 20 28 28 O 1.33961 * 108.76165 * 0.22240 * 5 4 3 29 29 H 1.09005 * 109.47001 * 90.00195 * 1 2 3 30 30 H 1.09000 * 109.46709 * 209.99620 * 1 2 3 31 31 H 1.09001 * 109.47494 * 329.99918 * 1 2 3 32 32 H 1.07992 * 126.16999 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46906 * 330.01968 * 6 5 4 34 34 H 1.09000 * 109.46552 * 210.02361 * 6 5 4 35 35 H 1.09000 * 109.47240 * 59.99312 * 8 7 6 36 36 H 1.09009 * 109.47181 * 300.00395 * 8 7 6 37 37 H 0.97006 * 120.00100 * 359.97438 * 11 9 8 38 38 H 1.09007 * 109.47018 * 300.00328 * 12 11 9 39 39 H 1.09006 * 109.47223 * 59.99331 * 12 11 9 40 40 H 1.08997 * 109.49518 * 294.37144 * 15 13 12 41 41 H 1.08996 * 109.49667 * 54.46879 * 15 13 12 42 42 H 1.08995 * 109.46298 * 178.61380 * 16 15 13 43 43 H 1.09004 * 109.44719 * 58.64613 * 16 15 13 44 44 H 1.09001 * 109.49726 * 301.41809 * 17 16 15 45 45 H 1.08994 * 109.49991 * 181.31344 * 17 16 15 46 46 H 1.09001 * 109.58920 * 185.58053 * 18 17 16 47 47 H 1.08997 * 109.70407 * 65.22687 * 18 17 16 48 48 H 0.96996 * 119.99859 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5765 -0.6547 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 8 5.1880 -1.8131 1.3439 8 6 6.3453 -2.6438 1.4554 9 6 6.6613 -2.8726 2.9111 10 8 5.9642 -2.3730 3.7685 11 7 7.7184 -3.6323 3.2599 12 6 8.0291 -3.8497 4.6749 13 6 9.2675 -4.7402 4.7943 14 1 10.1145 -4.2551 4.3092 15 6 9.5870 -4.9799 6.2732 16 6 10.7389 -5.9812 6.3863 17 6 10.3220 -7.3139 5.7601 18 6 10.0107 -7.1006 4.2753 19 7 9.0067 -6.0352 4.1509 20 6 7.8498 -6.2452 3.4490 21 1 6.9419 -5.7378 3.7402 22 6 7.8440 -7.1100 2.3633 23 7 8.9811 -7.5171 1.8401 24 14 6.2224 -7.6961 1.6447 25 1 5.0977 -7.0974 2.4075 26 1 6.1321 -7.2799 0.2221 27 1 6.1482 -9.1766 1.7329 28 8 2.3075 -1.0840 -0.0064 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9821 2.1112 -0.0004 33 1 5.6145 -1.0225 -0.5166 34 1 4.5761 -2.4681 -0.5176 35 1 7.1913 -2.1551 0.9720 36 1 6.1535 -3.6012 0.9707 37 1 8.2757 -4.0322 2.5740 38 1 8.2237 -2.8910 5.1557 39 1 7.1835 -4.3353 5.1622 40 1 9.8762 -4.0384 6.7401 41 1 8.7064 -5.3803 6.7755 42 1 10.9847 -6.1349 7.4370 43 1 11.6116 -5.5911 5.8625 44 1 9.4344 -7.6923 6.2671 45 1 11.1343 -8.0336 5.8617 46 1 9.6189 -8.0236 3.8478 47 1 10.9190 -6.8103 3.7474 48 1 8.9770 -8.1217 1.0816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265648823.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:32 Heat of formation + Delta-G solvation = -34.786137 kcal Electronic energy + Delta-G solvation = -29467.407634 eV Core-core repulsion = 25332.133981 eV Total energy + Delta-G solvation = -4135.273653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.48469 -39.39854 -38.05433 -37.25073 -34.88438 -34.14511 -33.10241 -32.95504 -31.00561 -29.97572 -29.67941 -27.61595 -25.79565 -25.26131 -24.30844 -22.47720 -22.17581 -21.26463 -20.77984 -19.96976 -19.12163 -17.59841 -17.32100 -16.84559 -16.35351 -16.21785 -16.03276 -15.50139 -15.02598 -14.74485 -14.61752 -14.16473 -14.00557 -13.74704 -13.57639 -13.43857 -13.39692 -13.04455 -12.85999 -12.64516 -12.50994 -12.23262 -12.05412 -11.94002 -11.64674 -11.45936 -11.21007 -11.00160 -10.82126 -10.69986 -10.57242 -10.30743 -10.16832 -10.02559 -9.85578 -9.57604 -9.46294 -9.22729 -8.90142 -8.63279 -8.25007 -6.70222 -5.89021 -3.35602 1.15129 2.27818 2.50405 3.14155 3.25951 3.29909 3.37101 3.41690 3.84326 4.37552 4.45979 4.51031 4.77898 4.79311 4.94372 5.06410 5.17113 5.20178 5.23221 5.27788 5.30016 5.33892 5.44852 5.49564 5.62550 5.63996 5.66993 5.84616 5.95155 6.03445 6.09103 6.13913 6.28502 6.34698 6.40020 6.58126 6.68724 6.71346 6.83491 6.84612 6.95938 7.15940 7.35285 7.55495 7.61922 7.75059 8.21786 8.36240 8.83641 9.11666 9.73123 10.31569 11.17600 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002638 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.223377 B =10612.021277 C =11748.956895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.043 4.043 3 C -0.045 4.045 4 N -0.461 5.461 5 C 0.194 3.806 6 C 0.158 3.842 7 O -0.357 6.357 8 C 0.045 3.955 9 C 0.510 3.490 10 O -0.543 6.543 11 N -0.691 5.691 12 C 0.137 3.863 13 C 0.160 3.840 14 H 0.033 0.967 15 C -0.127 4.127 16 C -0.107 4.107 17 C -0.144 4.144 18 C 0.173 3.827 19 N -0.589 5.589 20 C -0.250 4.250 21 H 0.071 0.929 22 C 0.007 3.993 23 N -0.899 5.899 24 Si 0.889 3.111 25 H -0.276 1.276 26 H -0.289 1.289 27 H -0.288 1.288 28 O -0.193 6.193 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.185 0.815 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.415 0.585 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.084 0.916 47 H 0.019 0.981 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 10.690 -3.703 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.185 4.185 4 N -0.192 5.192 5 C -0.012 4.012 6 C 0.080 3.920 7 O -0.274 6.274 8 C -0.035 4.035 9 C 0.294 3.706 10 O -0.421 6.421 11 N -0.344 5.344 12 C 0.013 3.987 13 C 0.053 3.947 14 H 0.051 0.949 15 C -0.167 4.167 16 C -0.145 4.145 17 C -0.183 4.183 18 C 0.048 3.952 19 N -0.313 5.313 20 C -0.380 4.380 21 H 0.089 0.911 22 C -0.192 4.192 23 N -0.543 5.543 24 Si 0.718 3.282 25 H -0.201 1.201 26 H -0.216 1.216 27 H -0.215 1.215 28 O -0.080 6.080 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.202 0.798 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.037 0.963 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.862 11.296 -3.075 13.570 hybrid contribution -1.033 -1.152 -0.954 1.818 sum -7.895 10.144 -4.029 13.471 Atomic orbital electron populations 1.20296 0.83857 1.04618 1.03774 1.23559 0.95186 0.84613 1.06284 1.23104 0.87682 1.00419 1.07262 1.70418 1.23200 1.09074 1.16474 1.25599 0.83877 0.89893 1.01854 1.20499 0.88874 0.96431 0.86160 1.88049 1.46059 1.69975 1.23339 1.22309 0.88748 0.95893 0.96519 1.19920 0.81463 0.79461 0.89729 1.90680 1.49559 1.50339 1.51566 1.45853 1.29492 1.49460 1.09607 1.21288 0.98232 0.97718 0.81433 1.20743 0.94037 0.87762 0.92117 0.94949 1.21937 0.98747 0.98178 0.97859 1.21361 0.97656 0.96522 0.98965 1.22193 0.99634 0.95663 1.00856 1.20758 0.91290 0.93664 0.89522 1.44088 1.20372 1.06737 1.60086 1.19275 0.87571 1.25095 1.06025 0.91125 1.25072 0.96147 1.01564 0.96392 1.70012 1.23890 1.36192 1.24216 0.86426 0.84086 0.78922 0.78726 1.20110 1.21613 1.21458 1.84404 1.17766 1.36571 1.69238 0.89745 0.90128 0.88837 0.79796 0.88430 0.89868 0.89867 0.89459 0.74684 0.92589 0.91545 0.92990 0.92066 0.93711 0.92864 0.92839 0.93540 0.89781 0.96318 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.43 36.01 0.38 -0.07 16 2 C -0.04 -0.48 7.39 -35.69 -0.26 -0.75 16 3 C -0.05 -0.54 11.80 -17.77 -0.21 -0.75 16 4 N -0.46 -6.84 11.29 -11.10 -0.13 -6.97 16 5 C 0.19 2.83 7.97 -12.94 -0.10 2.72 16 6 C 0.16 2.00 6.56 36.01 0.24 2.24 16 7 O -0.36 -5.95 9.86 -55.14 -0.54 -6.49 16 8 C 0.04 0.68 6.42 36.01 0.23 0.91 16 9 C 0.51 9.73 7.91 -10.99 -0.09 9.64 16 10 O -0.54 -12.46 16.50 -14.35 -0.24 -12.70 16 11 N -0.69 -12.84 3.84 -60.29 -0.23 -13.07 16 12 C 0.14 2.56 4.43 -4.04 -0.02 2.54 16 13 C 0.16 3.02 3.01 -67.59 -0.20 2.81 16 14 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 15 C -0.13 -2.11 5.37 -26.61 -0.14 -2.25 16 16 C -0.11 -1.73 5.88 -26.69 -0.16 -1.88 16 17 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 18 C 0.17 3.81 5.26 -3.71 -0.02 3.79 16 19 N -0.59 -13.06 2.97 -164.77 -0.49 -13.55 16 20 C -0.25 -6.05 6.97 -15.06 -0.10 -6.15 16 21 H 0.07 1.78 5.86 -52.48 -0.31 1.47 16 22 C 0.01 0.19 4.97 -17.43 -0.09 0.10 16 23 N -0.90 -23.58 11.22 55.49 0.62 -22.95 16 24 Si 0.89 20.37 29.58 -169.99 -5.03 15.34 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 O -0.19 -2.74 10.78 5.38 0.06 -2.68 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 37 H 0.42 7.77 7.40 -40.82 -0.30 7.47 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.38 7.42 -51.93 -0.39 0.99 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 2.10 6.19 -51.93 -0.32 1.78 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -32.49 391.33 -8.43 -40.92 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.64 Total: 6.13 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -0.71 Total: 10.13 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.22 Total: -56.54 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.72 Total: -21.87 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.49 -8.43 -40.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265648823.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.133 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds