Wall clock time and date at job start Tue Mar 31 2020 19:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34330 * 126.43789 * 2 1 4 4 N 1.34476 * 107.66539 * 180.02562 * 3 2 1 5 5 C 1.30262 * 108.70111 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.61798 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.47104 * 90.02208 * 6 5 4 8 8 C 1.42894 * 113.99890 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47594 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99222 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00152 * 179.72324 * 11 9 8 13 13 C 1.52999 * 109.47465 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.58573 * 60.09052 * 13 12 11 15 15 C 1.53196 * 109.58717 * 180.52071 * 13 12 11 16 16 C 1.53035 * 109.31168 * 174.41805 * 15 13 12 17 17 C 1.53041 * 109.54349 * 298.63591 * 16 15 13 18 18 C 1.53195 * 109.31015 * 61.36187 * 17 16 15 19 19 N 1.46924 * 108.77978 * 305.36803 * 18 17 16 20 20 C 1.36935 * 120.63203 * 233.63388 * 19 18 17 21 21 H 1.08005 * 119.99874 * 148.81310 * 20 19 18 22 22 C 1.38809 * 120.00021 * 328.80387 * 20 19 18 23 23 N 1.31621 * 120.00102 * 346.31424 * 22 20 19 24 24 Si 1.86800 * 120.00179 * 166.30904 * 22 20 19 25 25 H 1.48506 * 109.47093 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47226 * 120.00070 * 24 22 20 27 27 H 1.48497 * 109.47358 * 240.00556 * 24 22 20 28 28 O 1.33961 * 108.76165 * 0.22240 * 5 4 3 29 29 H 1.09005 * 109.47001 * 90.00195 * 1 2 3 30 30 H 1.09000 * 109.46709 * 209.99620 * 1 2 3 31 31 H 1.09001 * 109.47494 * 329.99918 * 1 2 3 32 32 H 1.07992 * 126.16999 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46906 * 330.01968 * 6 5 4 34 34 H 1.09000 * 109.46552 * 210.02361 * 6 5 4 35 35 H 1.09000 * 109.47240 * 59.99312 * 8 7 6 36 36 H 1.09009 * 109.47181 * 300.00395 * 8 7 6 37 37 H 0.97006 * 120.00100 * 359.97438 * 11 9 8 38 38 H 1.09007 * 109.47018 * 300.00328 * 12 11 9 39 39 H 1.09006 * 109.47223 * 59.99331 * 12 11 9 40 40 H 1.08997 * 109.49518 * 294.37144 * 15 13 12 41 41 H 1.08996 * 109.49667 * 54.46879 * 15 13 12 42 42 H 1.08995 * 109.46298 * 178.61380 * 16 15 13 43 43 H 1.09004 * 109.44719 * 58.64613 * 16 15 13 44 44 H 1.09001 * 109.49726 * 301.41809 * 17 16 15 45 45 H 1.08994 * 109.49991 * 181.31344 * 17 16 15 46 46 H 1.09001 * 109.58920 * 185.58053 * 18 17 16 47 47 H 1.08997 * 109.70407 * 65.22687 * 18 17 16 48 48 H 0.96996 * 119.99859 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5765 -0.6547 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 8 5.1880 -1.8131 1.3439 8 6 6.3453 -2.6438 1.4554 9 6 6.6613 -2.8726 2.9111 10 8 5.9642 -2.3730 3.7685 11 7 7.7184 -3.6323 3.2599 12 6 8.0291 -3.8497 4.6749 13 6 9.2675 -4.7402 4.7943 14 1 10.1145 -4.2551 4.3092 15 6 9.5870 -4.9799 6.2732 16 6 10.7389 -5.9812 6.3863 17 6 10.3220 -7.3139 5.7601 18 6 10.0107 -7.1006 4.2753 19 7 9.0067 -6.0352 4.1509 20 6 7.8498 -6.2452 3.4490 21 1 6.9419 -5.7378 3.7402 22 6 7.8440 -7.1100 2.3633 23 7 8.9811 -7.5171 1.8401 24 14 6.2224 -7.6961 1.6447 25 1 5.0977 -7.0974 2.4075 26 1 6.1321 -7.2799 0.2221 27 1 6.1482 -9.1766 1.7329 28 8 2.3075 -1.0840 -0.0064 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9821 2.1112 -0.0004 33 1 5.6145 -1.0225 -0.5166 34 1 4.5761 -2.4681 -0.5176 35 1 7.1913 -2.1551 0.9720 36 1 6.1535 -3.6012 0.9707 37 1 8.2757 -4.0322 2.5740 38 1 8.2237 -2.8910 5.1557 39 1 7.1835 -4.3353 5.1622 40 1 9.8762 -4.0384 6.7401 41 1 8.7064 -5.3803 6.7755 42 1 10.9847 -6.1349 7.4370 43 1 11.6116 -5.5911 5.8625 44 1 9.4344 -7.6923 6.2671 45 1 11.1343 -8.0336 5.8617 46 1 9.6189 -8.0236 3.8478 47 1 10.9190 -6.8103 3.7474 48 1 8.9770 -8.1217 1.0816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265648823.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:31 Heat of formation + Delta-G solvation = -57.374112 kcal Electronic energy + Delta-G solvation = -29468.387122 eV Core-core repulsion = 25332.133981 eV Total energy + Delta-G solvation = -4136.253141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.43180 -40.88136 -39.48873 -38.59996 -35.87650 -35.69063 -34.87709 -33.74999 -32.52392 -31.68764 -30.67363 -28.81734 -27.39201 -26.29992 -25.76435 -23.79502 -23.41327 -22.31267 -22.21110 -21.47686 -20.66792 -18.86421 -18.48036 -18.15978 -17.58107 -17.53897 -17.39284 -17.00775 -16.38693 -16.03115 -15.82053 -15.65141 -15.46046 -15.08032 -14.85306 -14.65684 -14.46670 -14.16325 -14.03662 -13.90412 -13.61349 -13.56614 -13.30786 -13.13889 -13.03866 -12.82496 -12.75681 -12.54955 -12.48225 -12.29234 -12.00903 -11.78617 -11.68278 -11.51908 -11.15110 -11.07308 -10.94730 -10.75809 -10.50191 -9.85556 -9.78607 -8.53568 -7.80613 -5.27773 0.20305 1.34568 1.40342 1.48977 1.55645 1.60805 1.66422 2.09223 2.50683 2.83621 3.31286 3.35365 3.60049 3.73340 3.82531 3.98426 4.01706 4.06958 4.15355 4.21278 4.23640 4.27943 4.29074 4.44919 4.46226 4.56660 4.58668 4.64627 4.66746 4.77391 4.88595 4.97096 5.01366 5.11304 5.15986 5.23600 5.23851 5.29683 5.39242 5.48113 5.59963 5.65954 5.77311 5.81192 5.86490 6.47054 6.59893 6.71128 7.21908 7.33727 7.90721 8.44596 9.23710 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002638 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.223377 B =10612.021277 C =11748.956895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.042 4.042 3 C -0.064 4.064 4 N -0.486 5.486 5 C 0.166 3.834 6 C 0.155 3.845 7 O -0.391 6.391 8 C 0.050 3.950 9 C 0.504 3.496 10 O -0.588 6.588 11 N -0.688 5.688 12 C 0.141 3.859 13 C 0.161 3.839 14 H 0.038 0.962 15 C -0.123 4.123 16 C -0.102 4.102 17 C -0.136 4.136 18 C 0.178 3.822 19 N -0.601 5.601 20 C -0.236 4.236 21 H 0.060 0.940 22 C -0.030 4.030 23 N -0.922 5.922 24 Si 0.934 3.066 25 H -0.284 1.284 26 H -0.281 1.281 27 H -0.298 1.298 28 O -0.213 6.213 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.215 0.785 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.416 0.584 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.004 0.996 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 11.828 -3.603 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.202 4.202 4 N -0.217 5.217 5 C -0.039 4.039 6 C 0.078 3.922 7 O -0.309 6.309 8 C -0.029 4.029 9 C 0.291 3.709 10 O -0.469 6.469 11 N -0.340 5.340 12 C 0.017 3.983 13 C 0.055 3.945 14 H 0.055 0.945 15 C -0.163 4.163 16 C -0.140 4.140 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.326 5.326 20 C -0.367 4.367 21 H 0.078 0.922 22 C -0.226 4.226 23 N -0.568 5.568 24 Si 0.764 3.236 25 H -0.210 1.210 26 H -0.207 1.207 27 H -0.225 1.225 28 O -0.100 6.100 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.232 0.768 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.253 0.747 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.022 0.978 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.961 12.437 -2.977 14.560 hybrid contribution -1.061 -1.445 -0.947 2.028 sum -8.022 10.992 -3.925 14.162 Atomic orbital electron populations 1.20567 0.80512 1.05830 1.05476 1.24508 0.96959 0.83799 1.04225 1.23678 0.86858 1.02096 1.07607 1.70383 1.24973 1.09506 1.16869 1.25977 0.84514 0.90244 1.03209 1.20797 0.89153 0.97582 0.84623 1.87986 1.46638 1.70299 1.26019 1.22324 0.89907 0.96956 0.93697 1.20640 0.80595 0.78427 0.91277 1.90650 1.50904 1.52116 1.53255 1.45866 1.29438 1.49114 1.09570 1.21245 0.97227 0.98204 0.81631 1.20889 0.94022 0.86097 0.93516 0.94458 1.21901 0.98713 0.99850 0.95803 1.21342 0.97413 0.94718 1.00513 1.22059 0.99930 0.97705 0.97831 1.20580 0.90235 0.92065 0.91871 1.44258 1.19831 1.08319 1.60167 1.19244 0.87975 1.24074 1.05402 0.92233 1.25458 0.97690 1.02346 0.97122 1.70112 1.24947 1.37069 1.24720 0.85723 0.81651 0.77682 0.78507 1.20995 1.20742 1.22501 1.84404 1.18143 1.37920 1.69491 0.87627 0.90134 0.86324 0.76833 0.86033 0.87811 0.86169 0.88272 0.74664 0.90999 0.93986 0.90025 0.93024 0.90884 0.92242 0.93785 0.91764 0.93269 0.97805 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.43 71.24 0.74 0.02 16 2 C -0.04 -0.90 7.39 24.79 0.18 -0.72 16 3 C -0.06 -1.45 11.80 83.39 0.98 -0.46 16 4 N -0.49 -14.29 11.29 -303.83 -3.43 -17.72 16 5 C 0.17 4.83 7.97 88.34 0.70 5.53 16 6 C 0.16 3.80 6.56 71.24 0.47 4.27 16 7 O -0.39 -12.90 9.86 -129.94 -1.28 -14.18 16 8 C 0.05 1.46 6.42 71.24 0.46 1.92 16 9 C 0.50 19.20 7.91 87.66 0.69 19.89 16 10 O -0.59 -27.38 16.50 16.01 0.26 -27.12 16 11 N -0.69 -25.38 3.84 -463.06 -1.78 -27.15 16 12 C 0.14 5.20 4.43 86.38 0.38 5.59 16 13 C 0.16 5.86 3.01 44.97 0.14 6.00 16 14 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 15 C -0.12 -3.78 5.37 30.67 0.16 -3.61 16 16 C -0.10 -2.98 5.88 30.62 0.18 -2.80 16 17 C -0.14 -4.75 6.08 30.67 0.19 -4.57 16 18 C 0.18 7.84 5.26 86.36 0.45 8.29 16 19 N -0.60 -26.61 2.97 -675.21 -2.01 -28.61 16 20 C -0.24 -11.52 6.97 84.03 0.59 -10.94 16 21 H 0.06 3.04 5.86 -2.91 -0.02 3.02 16 22 C -0.03 -1.49 4.97 84.86 0.42 -1.07 16 23 N -0.92 -49.05 11.22 21.65 0.24 -48.81 16 24 Si 0.93 42.31 29.58 68.60 2.03 44.34 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 O -0.21 -6.00 10.78 -3.67 -0.04 -6.04 16 29 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.42 15.37 7.40 -92.70 -0.69 14.68 16 38 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.04 1.76 7.42 -2.38 -0.02 1.74 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 2.50 6.19 -2.39 -0.01 2.49 16 47 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.25 13.03 8.31 -92.71 -0.77 12.25 16 Total: -1.00 -72.50 391.33 1.03 -71.48 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.28 Total: 26.47 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: 6.74 Total: 27.34 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -6.97 Total: -122.30 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -1.06 Total: -47.33 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -72.50 1.03 -71.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265648823.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.104 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds