Wall clock time and date at job start Tue Mar 31 2020 19:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34326 * 126.44144 * 2 1 4 4 N 1.34481 * 107.66621 * 179.76819 * 3 2 1 5 5 C 1.30253 * 108.70114 * 0.42256 * 4 3 2 6 6 C 1.50695 * 125.61694 * 179.83710 * 5 4 3 7 7 O 1.42898 * 109.47094 * 89.69435 * 6 5 4 8 8 C 1.42906 * 114.00217 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47188 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00135 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99626 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99573 * 174.90218 * 11 9 8 13 13 C 1.53001 * 110.01578 * 65.17902 * 12 11 9 14 14 N 1.46506 * 109.46799 * 55.14428 * 13 12 11 15 15 C 1.36936 * 119.99452 * 174.90448 * 14 13 12 16 16 H 1.07998 * 120.00248 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99592 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00049 * 359.72616 * 17 15 14 19 19 Si 1.86801 * 119.99917 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46922 * 89.99964 * 19 17 15 21 21 H 1.48494 * 109.47135 * 210.00137 * 19 17 15 22 22 H 1.48498 * 109.47126 * 330.00635 * 19 17 15 23 23 C 1.54258 * 110.07101 * 186.59963 * 12 11 9 24 24 C 1.54889 * 104.19983 * 95.69808 * 23 12 11 25 25 C 1.54888 * 102.74757 * 37.93901 * 24 23 12 26 26 C 1.53873 * 110.03121 * 303.78847 * 12 11 9 27 27 O 1.33961 * 108.76085 * 359.57597 * 5 4 3 28 28 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46818 * 299.99648 * 1 2 3 30 30 H 1.08999 * 109.47465 * 60.00087 * 1 2 3 31 31 H 1.08000 * 126.16759 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47746 * 329.69341 * 6 5 4 33 33 H 1.08999 * 109.47075 * 209.69538 * 6 5 4 34 34 H 1.08998 * 109.47034 * 59.99575 * 8 7 6 35 35 H 1.09007 * 109.46789 * 299.99978 * 8 7 6 36 36 H 0.96993 * 120.00337 * 354.90755 * 11 9 8 37 37 H 1.08992 * 109.47364 * 295.14284 * 13 12 11 38 38 H 1.09000 * 109.46863 * 175.13723 * 13 12 11 39 39 H 0.96993 * 120.00195 * 354.90276 * 14 13 12 40 40 H 0.96995 * 120.00186 * 180.02562 * 18 17 15 41 41 H 1.09007 * 110.48824 * 214.37891 * 23 12 11 42 42 H 1.09008 * 110.49110 * 337.01573 * 23 12 11 43 43 H 1.09004 * 110.75399 * 279.62546 * 24 23 12 44 44 H 1.08993 * 110.75933 * 156.25636 * 24 23 12 45 45 H 1.09001 * 110.49064 * 203.38245 * 25 24 23 46 46 H 1.09009 * 110.48457 * 80.73700 * 25 24 23 47 47 H 1.09000 * 110.03496 * 359.95184 * 26 12 11 48 48 H 1.09002 * 110.02892 * 121.38242 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6547 -0.0008 6 6 4.8004 -1.5339 -0.0014 7 8 5.1877 -1.8121 1.3456 8 6 6.3452 -2.6428 1.4580 9 6 6.6608 -2.8704 2.9139 10 8 5.9636 -2.3701 3.7709 11 7 7.7179 -3.6299 3.2634 12 6 8.0916 -3.7603 4.6740 13 6 6.9848 -4.4833 5.4442 14 7 6.7041 -5.7702 4.8028 15 6 5.8192 -6.6430 5.3775 16 1 5.3286 -6.3829 6.3038 17 6 5.5528 -7.8622 4.7695 18 7 6.1467 -8.1769 3.6378 19 14 4.3462 -9.0532 5.5537 20 1 2.9789 -8.7811 5.0422 21 1 4.7338 -10.4458 5.2141 22 1 4.3666 -8.8792 7.0284 23 6 9.4180 -4.5375 4.8006 24 6 10.4984 -3.4318 4.8975 25 6 9.8040 -2.3502 5.7617 26 6 8.3369 -2.3696 5.2850 27 8 2.3075 -1.0840 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9821 2.1112 0.0004 32 1 5.6147 -1.0230 -0.5154 33 1 4.5762 -2.4685 -0.5154 34 1 7.1911 -2.1544 0.9744 35 1 6.1533 -3.6005 0.9741 36 1 8.2313 -4.0900 2.5811 37 1 6.0824 -3.8722 5.4429 38 1 7.3079 -4.6522 6.4715 39 1 7.1451 -6.0040 3.9711 40 1 5.9604 -9.0286 3.2128 41 1 9.4169 -5.1498 5.7024 42 1 9.5834 -5.1562 3.9185 43 1 10.7402 -3.0403 3.9093 44 1 11.3926 -3.8080 5.3944 45 1 10.2509 -1.3726 5.5810 46 1 9.8651 -2.6093 6.8188 47 1 8.1788 -1.5976 4.5319 48 1 7.6675 -2.2098 6.1303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267841513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:49 Heat of formation + Delta-G solvation = -43.897536 kcal Electronic energy + Delta-G solvation = -29487.050695 eV Core-core repulsion = 25351.381943 eV Total energy + Delta-G solvation = -4135.668753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.48958 -40.09135 -38.32502 -36.97716 -34.88901 -34.26967 -33.15119 -32.94792 -31.07770 -29.84782 -28.63133 -28.34222 -26.82048 -25.26435 -24.40480 -22.48091 -22.16734 -21.28694 -20.93674 -20.44962 -18.90587 -17.63799 -17.32179 -17.04816 -16.70440 -16.34186 -16.23817 -15.70309 -15.00166 -14.87381 -14.71307 -14.42388 -14.14193 -13.87147 -13.70188 -13.39577 -13.21913 -13.16218 -13.01784 -12.67385 -12.63331 -12.29858 -12.03454 -11.85245 -11.47417 -11.46728 -11.12581 -10.92729 -10.86560 -10.79630 -10.71403 -10.65765 -10.42569 -10.38593 -10.00969 -9.94636 -9.65512 -9.32956 -8.91300 -8.75963 -8.53121 -6.81426 -5.71743 -2.97280 1.14192 2.25033 2.50261 3.01508 3.14435 3.47340 3.52582 3.53920 3.74987 4.29290 4.50924 4.62103 4.71827 4.76753 4.77883 4.86564 4.87487 5.02447 5.05951 5.09040 5.14528 5.17897 5.28231 5.31906 5.57108 5.61880 5.64525 5.67449 5.70887 5.81874 5.85844 5.93123 6.00233 6.05994 6.08630 6.22847 6.32915 6.43565 6.52602 6.56433 6.62994 6.74347 6.99146 7.17344 7.54188 7.76840 7.90655 8.48358 8.65689 9.59868 10.18323 10.54617 11.51709 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.003197 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.530893 B = 8755.463366 C =11284.461852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.047 4.047 4 N -0.461 5.461 5 C 0.191 3.809 6 C 0.160 3.840 7 O -0.354 6.354 8 C 0.045 3.955 9 C 0.520 3.480 10 O -0.511 6.511 11 N -0.710 5.710 12 C 0.172 3.828 13 C 0.144 3.856 14 N -0.726 5.726 15 C -0.229 4.229 16 H 0.068 0.932 17 C -0.017 4.017 18 N -0.937 5.937 19 Si 0.905 3.095 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.283 1.283 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.118 4.118 27 O -0.192 6.192 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.185 0.815 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.397 0.603 37 H 0.038 0.962 38 H 0.026 0.974 39 H 0.381 0.619 40 H 0.253 0.747 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 16.497 -9.763 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.186 4.186 4 N -0.192 5.192 5 C -0.015 4.015 6 C 0.082 3.918 7 O -0.272 6.272 8 C -0.035 4.035 9 C 0.304 3.696 10 O -0.385 6.385 11 N -0.363 5.363 12 C 0.087 3.913 13 C 0.016 3.984 14 N -0.370 5.370 15 C -0.360 4.360 16 H 0.086 0.914 17 C -0.212 4.212 18 N -0.587 5.587 19 Si 0.737 3.263 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.157 4.157 27 O -0.078 6.078 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.202 0.798 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.231 0.769 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.215 0.785 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.188 17.174 -8.825 19.346 hybrid contribution -0.915 -1.533 -0.467 1.846 sum 0.272 15.641 -9.292 18.195 Atomic orbital electron populations 1.20313 0.83824 1.04640 1.03908 1.23577 0.95221 0.84559 1.05948 1.23081 0.87663 1.00457 1.07440 1.70404 1.23256 1.09072 1.16425 1.25542 0.83931 0.89873 1.02158 1.20476 0.88897 0.96442 0.85967 1.88082 1.45839 1.69758 1.23483 1.22309 0.88890 0.95985 0.96315 1.19837 0.80667 0.79281 0.89790 1.90717 1.47529 1.48950 1.51255 1.45892 1.31468 1.50297 1.08645 1.21242 0.95106 0.94733 0.80247 1.21174 0.95200 0.87951 0.94091 1.42194 1.52137 1.14822 1.27825 1.19255 1.16258 0.96049 1.04469 0.91383 1.24666 1.00765 0.98146 0.97603 1.69640 1.46896 1.23446 1.18736 0.86204 0.81025 0.80591 0.78524 1.21887 1.21886 1.20840 1.22585 0.92199 0.97070 1.03596 1.22533 0.97832 0.96151 0.99735 1.22389 0.95500 0.98602 0.99725 1.22416 0.96006 0.96201 1.01039 1.84422 1.17729 1.36551 1.69091 0.90144 0.89079 0.89260 0.79780 0.88580 0.89823 0.90085 0.89519 0.76922 0.94432 0.95602 0.78522 0.93769 0.89589 0.90942 0.91818 0.91670 0.92058 0.91590 0.91470 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.43 36.01 0.38 -0.09 16 2 C -0.04 -0.45 7.39 -35.69 -0.26 -0.71 16 3 C -0.05 -0.55 11.80 -17.77 -0.21 -0.76 16 4 N -0.46 -6.66 11.29 -11.10 -0.13 -6.79 16 5 C 0.19 2.71 7.97 -12.95 -0.10 2.60 16 6 C 0.16 1.87 6.56 36.00 0.24 2.10 16 7 O -0.35 -5.55 9.86 -55.14 -0.54 -6.09 16 8 C 0.04 0.59 6.42 36.01 0.23 0.82 16 9 C 0.52 8.98 6.95 -10.99 -0.08 8.90 16 10 O -0.51 -11.12 13.77 -14.35 -0.20 -11.32 16 11 N -0.71 -10.95 4.50 -46.57 -0.21 -11.16 16 12 C 0.17 2.86 0.57 -130.70 -0.07 2.78 16 13 C 0.14 3.13 4.64 -4.04 -0.02 3.11 16 14 N -0.73 -18.54 5.27 -59.91 -0.32 -18.86 16 15 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 18 N -0.94 -28.14 13.06 55.49 0.72 -27.42 16 19 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.12 -1.69 5.74 -25.08 -0.14 -1.83 16 24 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 25 C -0.12 -1.49 6.83 -25.07 -0.17 -1.67 16 26 C -0.12 -1.77 5.22 -25.61 -0.13 -1.91 16 27 O -0.19 -2.72 10.78 5.37 0.06 -2.66 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.19 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.40 5.03 8.23 -40.82 -0.34 4.69 16 37 H 0.04 0.93 6.56 -51.93 -0.34 0.59 16 38 H 0.03 0.56 8.04 -51.93 -0.42 0.15 16 39 H 0.38 9.86 7.19 -40.82 -0.29 9.57 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 1.38 7.79 -51.92 -0.40 0.97 16 42 H 0.07 1.03 7.70 -51.92 -0.40 0.63 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 47 H 0.07 1.05 6.99 -51.93 -0.36 0.69 16 48 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -38.01 396.26 -8.00 -46.01 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.57 Total: 9.94 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.77 Total: 4.41 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.07 Total: -64.23 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.68 Total: -20.07 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.01 -8.00 -46.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267841513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.114 kcal (2) G-P(sol) polarization free energy of solvation -38.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds