Wall clock time and date at job start Tue Mar 31 2020 19:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34326 * 126.44144 * 2 1 4 4 N 1.34481 * 107.66621 * 179.76819 * 3 2 1 5 5 C 1.30253 * 108.70114 * 0.42256 * 4 3 2 6 6 C 1.50695 * 125.61694 * 179.83710 * 5 4 3 7 7 O 1.42898 * 109.47094 * 89.69435 * 6 5 4 8 8 C 1.42906 * 114.00217 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47188 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00135 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99626 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99573 * 174.90218 * 11 9 8 13 13 C 1.53001 * 110.01578 * 65.17902 * 12 11 9 14 14 N 1.46506 * 109.46799 * 55.14428 * 13 12 11 15 15 C 1.36936 * 119.99452 * 174.90448 * 14 13 12 16 16 H 1.07998 * 120.00248 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99592 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00049 * 359.72616 * 17 15 14 19 19 Si 1.86801 * 119.99917 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46922 * 89.99964 * 19 17 15 21 21 H 1.48494 * 109.47135 * 210.00137 * 19 17 15 22 22 H 1.48498 * 109.47126 * 330.00635 * 19 17 15 23 23 C 1.54258 * 110.07101 * 186.59963 * 12 11 9 24 24 C 1.54889 * 104.19983 * 95.69808 * 23 12 11 25 25 C 1.54888 * 102.74757 * 37.93901 * 24 23 12 26 26 C 1.53873 * 110.03121 * 303.78847 * 12 11 9 27 27 O 1.33961 * 108.76085 * 359.57597 * 5 4 3 28 28 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46818 * 299.99648 * 1 2 3 30 30 H 1.08999 * 109.47465 * 60.00087 * 1 2 3 31 31 H 1.08000 * 126.16759 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47746 * 329.69341 * 6 5 4 33 33 H 1.08999 * 109.47075 * 209.69538 * 6 5 4 34 34 H 1.08998 * 109.47034 * 59.99575 * 8 7 6 35 35 H 1.09007 * 109.46789 * 299.99978 * 8 7 6 36 36 H 0.96993 * 120.00337 * 354.90755 * 11 9 8 37 37 H 1.08992 * 109.47364 * 295.14284 * 13 12 11 38 38 H 1.09000 * 109.46863 * 175.13723 * 13 12 11 39 39 H 0.96993 * 120.00195 * 354.90276 * 14 13 12 40 40 H 0.96995 * 120.00186 * 180.02562 * 18 17 15 41 41 H 1.09007 * 110.48824 * 214.37891 * 23 12 11 42 42 H 1.09008 * 110.49110 * 337.01573 * 23 12 11 43 43 H 1.09004 * 110.75399 * 279.62546 * 24 23 12 44 44 H 1.08993 * 110.75933 * 156.25636 * 24 23 12 45 45 H 1.09001 * 110.49064 * 203.38245 * 25 24 23 46 46 H 1.09009 * 110.48457 * 80.73700 * 25 24 23 47 47 H 1.09000 * 110.03496 * 359.95184 * 26 12 11 48 48 H 1.09002 * 110.02892 * 121.38242 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6547 -0.0008 6 6 4.8004 -1.5339 -0.0014 7 8 5.1877 -1.8121 1.3456 8 6 6.3452 -2.6428 1.4580 9 6 6.6608 -2.8704 2.9139 10 8 5.9636 -2.3701 3.7709 11 7 7.7179 -3.6299 3.2634 12 6 8.0916 -3.7603 4.6740 13 6 6.9848 -4.4833 5.4442 14 7 6.7041 -5.7702 4.8028 15 6 5.8192 -6.6430 5.3775 16 1 5.3286 -6.3829 6.3038 17 6 5.5528 -7.8622 4.7695 18 7 6.1467 -8.1769 3.6378 19 14 4.3462 -9.0532 5.5537 20 1 2.9789 -8.7811 5.0422 21 1 4.7338 -10.4458 5.2141 22 1 4.3666 -8.8792 7.0284 23 6 9.4180 -4.5375 4.8006 24 6 10.4984 -3.4318 4.8975 25 6 9.8040 -2.3502 5.7617 26 6 8.3369 -2.3696 5.2850 27 8 2.3075 -1.0840 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9821 2.1112 0.0004 32 1 5.6147 -1.0230 -0.5154 33 1 4.5762 -2.4685 -0.5154 34 1 7.1911 -2.1544 0.9744 35 1 6.1533 -3.6005 0.9741 36 1 8.2313 -4.0900 2.5811 37 1 6.0824 -3.8722 5.4429 38 1 7.3079 -4.6522 6.4715 39 1 7.1451 -6.0040 3.9711 40 1 5.9604 -9.0286 3.2128 41 1 9.4169 -5.1498 5.7024 42 1 9.5834 -5.1562 3.9185 43 1 10.7402 -3.0403 3.9093 44 1 11.3926 -3.8080 5.3944 45 1 10.2509 -1.3726 5.5810 46 1 9.8651 -2.6093 6.8188 47 1 8.1788 -1.5976 4.5319 48 1 7.6675 -2.2098 6.1303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267841513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:48 Heat of formation + Delta-G solvation = -73.366594 kcal Electronic energy + Delta-G solvation = -29488.328570 eV Core-core repulsion = 25351.381943 eV Total energy + Delta-G solvation = -4136.946627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.42654 -41.41999 -39.45360 -38.22502 -36.17970 -35.86907 -34.54992 -33.73926 -33.04150 -30.86019 -29.83232 -29.62090 -28.02248 -26.29134 -26.02836 -24.01776 -23.40617 -22.26337 -22.12974 -21.53858 -20.33232 -19.15948 -18.68846 -18.31618 -17.77250 -17.48163 -17.28162 -16.96557 -16.43304 -16.13321 -15.97907 -15.64522 -15.50065 -15.14439 -15.00878 -14.73886 -14.53916 -14.19840 -14.06896 -13.90147 -13.58354 -13.34862 -13.28209 -13.13252 -13.01376 -12.83052 -12.63055 -12.47609 -12.23602 -12.18369 -11.98032 -11.88860 -11.76617 -11.71889 -11.68594 -11.38593 -11.04291 -10.90754 -10.59783 -9.94091 -9.77908 -8.96004 -7.96453 -5.22396 0.21037 1.34978 1.43591 1.45500 1.53575 1.62642 1.70127 2.03337 2.54087 2.82359 3.29473 3.36586 3.52583 3.72502 3.73700 3.79479 3.94584 3.99457 4.07755 4.15949 4.18367 4.21040 4.31201 4.41543 4.45365 4.54391 4.58229 4.58922 4.65291 4.70824 4.82694 4.88206 4.94183 4.96469 5.10885 5.11506 5.12391 5.21475 5.24082 5.27399 5.36677 5.46018 5.51512 5.72063 5.85380 6.26694 6.59833 6.67346 7.34146 7.38046 8.07612 8.38383 9.26394 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.003197 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.530893 B = 8755.463366 C =11284.461852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.043 4.043 3 C -0.064 4.064 4 N -0.485 5.485 5 C 0.165 3.835 6 C 0.158 3.842 7 O -0.396 6.396 8 C 0.050 3.950 9 C 0.508 3.492 10 O -0.566 6.566 11 N -0.700 5.700 12 C 0.175 3.825 13 C 0.147 3.853 14 N -0.728 5.728 15 C -0.248 4.248 16 H 0.060 0.940 17 C -0.066 4.066 18 N -0.960 5.960 19 Si 0.967 3.033 20 H -0.292 1.292 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.113 4.113 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.113 4.113 27 O -0.214 6.214 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.215 0.785 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.412 0.588 37 H 0.003 0.997 38 H 0.022 0.978 39 H 0.379 0.621 40 H 0.252 0.748 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 16.930 -10.892 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.203 4.203 4 N -0.216 5.216 5 C -0.041 4.041 6 C 0.081 3.919 7 O -0.314 6.314 8 C -0.029 4.029 9 C 0.294 3.706 10 O -0.444 6.444 11 N -0.353 5.353 12 C 0.089 3.911 13 C 0.019 3.981 14 N -0.371 5.371 15 C -0.380 4.380 16 H 0.078 0.922 17 C -0.259 4.259 18 N -0.611 5.611 19 Si 0.796 3.204 20 H -0.220 1.220 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.155 4.155 26 C -0.152 4.152 27 O -0.101 6.101 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.231 0.769 32 H 0.143 0.857 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.249 0.751 37 H 0.020 0.980 38 H 0.040 0.960 39 H 0.212 0.788 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.178 17.607 -9.972 20.351 hybrid contribution -1.315 -1.613 -0.092 2.084 sum 0.863 15.993 -10.064 18.916 Atomic orbital electron populations 1.20562 0.80698 1.05238 1.05988 1.24486 0.96942 0.83853 1.04308 1.23641 0.86934 1.02041 1.07642 1.70376 1.24830 1.09520 1.16916 1.26099 0.84591 0.90317 1.03076 1.20802 0.89023 0.97524 0.84526 1.88013 1.46964 1.70354 1.26109 1.22401 0.90004 0.97196 0.93299 1.20738 0.80034 0.78339 0.91442 1.90691 1.49372 1.51181 1.53204 1.45830 1.31230 1.49728 1.08547 1.21150 0.94163 0.95364 0.80472 1.21185 0.95761 0.86393 0.94721 1.42229 1.51542 1.15564 1.27751 1.19534 1.16916 0.97002 1.04516 0.92154 1.25396 1.02573 0.99620 0.98309 1.69756 1.47914 1.23759 1.19631 0.85238 0.78597 0.78457 0.78068 1.21961 1.21337 1.19974 1.22533 0.91976 0.97765 1.02874 1.22496 0.97111 0.94345 1.00887 1.22381 0.92992 1.00153 0.99995 1.22338 0.98040 0.94836 0.99981 1.84422 1.18303 1.37941 1.69442 0.90261 0.87497 0.86442 0.76874 0.85686 0.87777 0.85368 0.87933 0.75096 0.97954 0.96046 0.78796 0.93894 0.91448 0.90536 0.89934 0.89676 0.89876 0.91279 0.92020 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.43 71.24 0.74 -0.07 16 2 C -0.04 -0.95 7.39 24.79 0.18 -0.77 16 3 C -0.06 -1.47 11.80 83.39 0.98 -0.48 16 4 N -0.48 -14.05 11.29 -303.84 -3.43 -17.49 16 5 C 0.17 4.71 7.97 88.34 0.70 5.42 16 6 C 0.16 3.58 6.56 71.23 0.47 4.04 16 7 O -0.40 -12.41 9.86 -129.94 -1.28 -13.69 16 8 C 0.05 1.25 6.42 71.24 0.46 1.70 16 9 C 0.51 17.72 6.95 87.66 0.61 18.33 16 10 O -0.57 -25.89 13.77 16.01 0.22 -25.67 16 11 N -0.70 -21.37 4.50 -419.65 -1.89 -23.26 16 12 C 0.17 5.84 0.57 4.32 0.00 5.84 16 13 C 0.15 6.68 4.64 86.38 0.40 7.08 16 14 N -0.73 -38.21 5.27 -343.44 -1.81 -40.02 16 15 C -0.25 -14.59 9.99 84.04 0.84 -13.75 16 16 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 18 N -0.96 -57.78 13.06 21.65 0.28 -57.50 16 19 Si 0.97 47.52 29.55 68.60 2.03 49.54 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 23 C -0.11 -3.16 5.74 31.67 0.18 -2.98 16 24 C -0.11 -2.21 6.91 31.88 0.22 -1.99 16 25 C -0.12 -2.58 6.83 31.67 0.22 -2.36 16 26 C -0.11 -3.42 5.22 31.32 0.16 -3.26 16 27 O -0.21 -6.17 10.78 -3.69 -0.04 -6.21 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.21 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.41 9.86 8.23 -92.71 -0.76 9.10 16 37 H 0.00 0.13 6.56 -2.39 -0.02 0.12 16 38 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 39 H 0.38 19.93 7.19 -92.71 -0.67 19.26 16 40 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.07 2.14 7.79 -2.38 -0.02 2.12 16 42 H 0.08 2.06 7.70 -2.38 -0.02 2.04 16 43 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.06 1.93 6.99 -2.39 -0.02 1.91 16 48 H 0.05 1.71 7.67 -2.39 -0.02 1.69 16 Total: -1.00 -86.19 396.26 0.27 -85.92 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.45 Total: 35.02 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.64 Total: 13.35 kcal Atomic # 7 Polarization: -131.42 SS G_CDS: -6.85 Total: -138.27 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.10 Total: -45.57 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.54 kcal Total: -86.19 0.27 -85.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267841513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.549 kcal (2) G-P(sol) polarization free energy of solvation -86.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds