Wall clock time and date at job start Tue Mar 31 2020 20:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34174 * 127.02538 * 2 1 4 4 O 1.34214 * 109.12203 * 180.26591 * 3 2 1 5 5 C 1.33652 * 110.91241 * 359.75213 * 4 3 2 6 6 C 1.50700 * 125.80346 * 179.97438 * 5 4 3 7 7 C 1.36416 * 108.39390 * 359.97438 * 5 4 3 8 8 C 1.47381 * 127.19346 * 179.97438 * 7 5 4 9 9 O 1.21621 * 119.99680 * 90.02480 * 8 7 5 10 10 N 1.34774 * 120.00306 * 270.02884 * 8 7 5 11 11 C 1.46504 * 119.99734 * 359.97438 * 10 8 7 12 12 C 1.46495 * 120.00260 * 179.97438 * 10 8 7 13 13 H 1.09002 * 109.46996 * 0.02562 * 12 10 8 14 14 C 1.52994 * 109.47359 * 240.00086 * 12 10 8 15 15 C 1.53006 * 109.46914 * 119.99664 * 12 10 8 16 16 N 1.46898 * 109.47138 * 305.00206 * 15 12 10 17 17 C 1.46906 * 110.99888 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47140 * 179.97438 * 17 16 15 19 19 O 1.21289 * 119.99678 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99614 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99518 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00058 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99807 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00409 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47268 * 90.00146 * 25 23 21 27 27 H 1.48500 * 109.47502 * 210.00166 * 25 23 21 28 28 H 1.48501 * 109.47054 * 330.00549 * 25 23 21 29 29 H 1.08999 * 109.46954 * 270.13422 * 1 2 3 30 30 H 1.09005 * 109.47056 * 30.12803 * 1 2 3 31 31 H 1.08999 * 109.47458 * 150.12749 * 1 2 3 32 32 H 1.07999 * 125.43877 * 0.02803 * 3 2 1 33 33 H 1.08997 * 109.46623 * 269.99999 * 6 5 4 34 34 H 1.08994 * 109.47091 * 30.00254 * 6 5 4 35 35 H 1.09003 * 109.46953 * 150.00255 * 6 5 4 36 36 H 1.08997 * 109.47173 * 270.00255 * 11 10 8 37 37 H 1.09000 * 109.46971 * 30.00374 * 11 10 8 38 38 H 1.09003 * 109.46862 * 149.99882 * 11 10 8 39 39 H 1.08990 * 109.47506 * 59.99735 * 14 12 10 40 40 H 1.09002 * 109.47542 * 180.02562 * 14 12 10 41 41 H 1.09006 * 109.46971 * 299.99615 * 14 12 10 42 42 H 1.08997 * 109.46770 * 185.00153 * 15 12 10 43 43 H 1.08995 * 109.47019 * 65.00366 * 15 12 10 44 44 H 1.00904 * 110.99913 * 303.95145 * 16 15 12 45 45 H 1.09004 * 109.47040 * 299.99934 * 17 16 15 46 46 H 1.09000 * 109.47033 * 59.99886 * 17 16 15 47 47 H 0.96996 * 120.00269 * 359.97438 * 20 18 17 48 48 H 0.97002 * 120.00022 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5921 0.6586 -0.0059 5 6 3.6623 -0.6761 -0.0045 6 6 4.9291 -1.4923 -0.0103 7 6 2.3922 -1.1739 0.0032 8 6 1.9912 -2.5921 0.0067 9 8 1.8312 -3.1761 1.0615 10 7 1.8018 -3.2418 -1.1587 11 6 1.9940 -2.5381 -2.4293 12 6 1.4037 -4.6516 -1.1552 13 1 1.3101 -5.0001 -0.1266 14 6 2.4634 -5.4827 -1.8812 15 6 0.0589 -4.8036 -1.8690 16 7 -0.9298 -3.9142 -1.2453 17 6 -2.2365 -4.0340 -1.9059 18 6 -3.2228 -3.1095 -1.2399 19 8 -2.8716 -2.4184 -0.3071 20 7 -4.4950 -3.0506 -1.6810 21 6 -5.3921 -2.2091 -1.0755 22 1 -5.0794 -1.5937 -0.2448 23 6 -6.7035 -2.1480 -1.5304 24 7 -7.0838 -2.8964 -2.5414 25 14 -7.9261 -1.0020 -0.7050 26 1 -7.8939 0.3224 -1.3758 27 1 -9.2915 -1.5766 -0.8092 28 1 -7.5648 -0.8407 0.7264 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8889 -0.5158 31 1 -0.3634 -0.8911 -0.5118 32 1 1.9896 2.1010 0.0004 33 1 5.2288 -1.6904 -1.0394 34 1 5.7193 -0.9403 0.4985 35 1 4.7553 -2.4366 0.5057 36 1 1.0527 -2.0843 -2.7393 37 1 2.7481 -1.7611 -2.3038 38 1 2.3244 -3.2455 -3.1900 39 1 3.4213 -5.3744 -1.3728 40 1 2.1670 -6.5316 -1.8790 41 1 2.5566 -5.1341 -2.9098 42 1 -0.2800 -5.8365 -1.7892 43 1 0.1736 -4.5391 -2.9201 44 1 -1.0072 -4.0968 -0.2559 45 1 -2.1380 -3.7644 -2.9575 46 1 -2.5912 -5.0616 -1.8260 47 1 -4.7756 -3.6030 -2.4272 48 1 -7.9995 -2.8540 -2.8588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268061081.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:38 Heat of formation + Delta-G solvation = -81.078425 kcal Electronic energy + Delta-G solvation = -30219.716647 eV Core-core repulsion = 26082.435610 eV Total energy + Delta-G solvation = -4137.281037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.52179 -40.85422 -40.08430 -37.90181 -36.15465 -35.56506 -34.87504 -33.57447 -33.24762 -32.33543 -29.08143 -28.94743 -27.81800 -27.35854 -26.67374 -24.91830 -24.21332 -21.71129 -21.06637 -20.68996 -20.01921 -19.82488 -18.58996 -18.01203 -17.66257 -17.16477 -16.83739 -16.50469 -16.33096 -16.28681 -15.89589 -15.32270 -15.15678 -14.96484 -14.87375 -14.41416 -14.23349 -14.18309 -14.06321 -13.85629 -13.74052 -13.54852 -13.52117 -13.35886 -13.21418 -13.12638 -13.03586 -12.87031 -12.75768 -12.53699 -12.41381 -12.25497 -12.13768 -11.77206 -11.50361 -11.09848 -10.36778 -10.33543 -10.00643 -9.60124 -9.40090 -9.29619 -8.46970 -5.95070 0.65772 1.26224 1.36551 1.40097 1.51530 1.52778 1.90488 2.06559 2.19037 2.28502 2.92010 3.20441 3.49190 3.55759 3.63277 3.88413 4.01328 4.17661 4.22273 4.29395 4.33129 4.34933 4.38998 4.50132 4.54850 4.60379 4.63640 4.65559 4.70674 4.71767 4.72824 4.79267 4.84818 4.96196 4.99195 5.10209 5.10821 5.24295 5.30907 5.40485 5.48972 5.64506 5.89179 6.09693 6.11365 6.29507 6.40036 6.61015 7.13338 7.18277 7.57056 8.13334 8.70610 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003064 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.548000 B = 9137.672333 C =10720.800855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.167 4.167 3 C -0.029 4.029 4 O -0.173 6.173 5 C 0.038 3.962 6 C -0.074 4.074 7 C -0.247 4.247 8 C 0.597 3.403 9 O -0.588 6.588 10 N -0.576 5.576 11 C 0.085 3.915 12 C 0.134 3.866 13 H 0.071 0.929 14 C -0.147 4.147 15 C 0.051 3.949 16 N -0.676 5.676 17 C 0.067 3.933 18 C 0.438 3.562 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.242 0.758 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.334 0.666 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.231 -0.738 -5.021 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.169 4.169 3 C -0.095 4.095 4 O -0.069 6.069 5 C -0.014 4.014 6 C -0.130 4.130 7 C -0.252 4.252 8 C 0.385 3.615 9 O -0.470 6.470 10 N -0.306 5.306 11 C -0.057 4.057 12 C 0.030 3.970 13 H 0.090 0.910 14 C -0.205 4.205 15 C -0.078 4.078 16 N -0.307 5.307 17 C -0.065 4.065 18 C 0.225 3.775 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.258 0.742 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.151 0.849 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.229 0.771 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.621 0.104 -4.369 25.006 hybrid contribution -2.041 -0.611 0.609 2.216 sum 22.580 -0.507 -3.760 22.896 Atomic orbital electron populations 1.19990 0.89062 1.02826 1.01300 1.21500 0.96576 0.91502 1.07278 1.24173 0.78783 1.00336 1.06180 1.83722 1.29697 1.21712 1.71801 1.22976 0.96250 0.81053 1.01097 1.20541 0.89979 0.97018 1.05508 1.21086 0.94357 0.93674 1.16038 1.17511 0.75555 0.85009 0.83423 1.90734 1.54132 1.69212 1.32884 1.47558 1.65856 1.11277 1.05952 1.21793 1.01358 0.97790 0.84777 1.21233 0.94171 0.80664 1.00913 0.91037 1.22022 0.97348 1.00029 1.01137 1.22475 0.90679 0.94917 0.99764 1.60043 1.06452 1.57017 1.07181 1.21525 0.88563 0.97024 0.99387 1.20891 0.83402 0.86909 0.86285 1.90514 1.78917 1.48250 1.32642 1.41914 1.08489 1.38766 1.32017 1.19621 0.91186 1.19987 1.15217 0.90589 1.25996 0.98973 0.99266 0.96980 1.69670 1.19816 1.40453 1.26271 0.84967 0.77215 0.78121 0.78282 1.19510 1.19497 1.20019 0.93238 0.90054 0.93179 0.74248 0.87103 0.88007 0.90185 0.93703 0.91002 0.88037 0.92009 0.89747 0.90100 0.92651 0.88880 0.84894 0.87585 0.91933 0.77053 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.55 10.38 71.24 0.74 -1.82 16 2 C -0.17 -4.91 6.38 -18.49 -0.12 -5.03 16 3 C -0.03 -0.65 11.96 66.89 0.80 0.15 16 4 O -0.17 -3.83 10.52 4.48 0.05 -3.78 16 5 C 0.04 0.87 7.04 25.26 0.18 1.05 16 6 C -0.07 -1.06 10.24 71.24 0.73 -0.33 16 7 C -0.25 -7.27 4.32 -18.99 -0.08 -7.35 16 8 C 0.60 19.40 7.11 86.65 0.62 20.02 16 9 O -0.59 -24.14 16.43 -4.10 -0.07 -24.20 16 10 N -0.58 -14.43 2.48 -826.51 -2.05 -16.48 16 11 C 0.09 1.63 9.42 127.77 1.20 2.83 16 12 C 0.13 2.98 2.88 44.99 0.13 3.11 16 13 H 0.07 2.04 6.90 -2.39 -0.02 2.02 16 14 C -0.15 -1.97 9.17 71.98 0.66 -1.31 16 15 C 0.05 1.15 4.98 86.31 0.43 1.58 16 16 N -0.68 -22.28 5.85 -517.92 -3.03 -25.31 16 17 C 0.07 2.33 6.17 85.56 0.53 2.86 16 18 C 0.44 21.20 7.82 87.66 0.69 21.89 16 19 O -0.62 -35.03 15.78 -3.06 -0.05 -35.08 16 20 N -0.57 -29.84 5.29 -306.99 -1.62 -31.46 16 21 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.12 13.05 21.66 0.28 -49.83 16 25 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.24 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.32 7.93 -2.39 -0.02 1.30 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.29 6.62 -2.39 -0.02 1.27 16 38 H 0.10 1.23 6.43 -2.39 -0.02 1.21 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.79 6.66 -2.38 -0.02 0.77 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.75 7.84 -2.39 -0.02 1.73 16 44 H 0.33 12.96 8.43 -89.69 -0.76 12.21 16 45 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.40 19.48 7.90 -92.71 -0.73 18.74 16 48 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -79.31 405.12 2.82 -76.50 By element: Atomic # 1 Polarization: 45.31 SS G_CDS: -0.50 Total: 44.81 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 7.78 Total: 19.19 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.42 Total: -123.09 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -0.07 Total: -63.06 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -79.31 2.82 -76.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268061081.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.583 kcal (2) G-P(sol) polarization free energy of solvation -79.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds