Wall clock time and date at job start Tue Mar 31 2020 20:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34177 * 127.02275 * 2 1 4 4 O 1.34213 * 109.12077 * 180.24971 * 3 2 1 5 5 C 1.33655 * 110.91035 * 359.72721 * 4 3 2 6 6 C 1.50698 * 125.80078 * 179.97438 * 5 4 3 7 7 C 1.36411 * 108.39675 * 0.02562 * 5 4 3 8 8 C 1.47377 * 127.19364 * 179.97438 * 7 5 4 9 9 O 1.21605 * 120.00589 * 90.29016 * 8 7 5 10 10 N 1.34784 * 119.99549 * 270.01938 * 8 7 5 11 11 C 1.46499 * 119.99893 * 359.97438 * 10 8 7 12 12 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 13 13 H 1.09004 * 109.46973 * 359.97438 * 12 10 8 14 14 C 1.52996 * 109.47349 * 119.99826 * 12 10 8 15 15 C 1.52998 * 109.47194 * 240.00124 * 12 10 8 16 16 N 1.46900 * 109.47137 * 55.00196 * 15 12 10 17 17 C 1.46903 * 110.99874 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47241 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99817 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00106 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99937 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99854 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99944 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99814 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47127 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47194 * 120.00051 * 25 23 21 28 28 H 1.48507 * 109.46685 * 239.99915 * 25 23 21 29 29 H 1.09005 * 109.46714 * 270.18773 * 1 2 3 30 30 H 1.09004 * 109.47380 * 30.18220 * 1 2 3 31 31 H 1.08992 * 109.47381 * 150.18916 * 1 2 3 32 32 H 1.08001 * 125.44065 * 359.94362 * 3 2 1 33 33 H 1.08999 * 109.47602 * 270.04545 * 6 5 4 34 34 H 1.09005 * 109.47412 * 30.04517 * 6 5 4 35 35 H 1.08999 * 109.47314 * 150.04603 * 6 5 4 36 36 H 1.08996 * 109.47008 * 90.00348 * 11 10 8 37 37 H 1.08997 * 109.46865 * 210.00034 * 11 10 8 38 38 H 1.08998 * 109.47058 * 329.99547 * 11 10 8 39 39 H 1.08998 * 109.47017 * 59.99612 * 14 12 10 40 40 H 1.08996 * 109.47637 * 180.02562 * 14 12 10 41 41 H 1.09009 * 109.47102 * 300.00533 * 14 12 10 42 42 H 1.09002 * 109.47360 * 174.99973 * 15 12 10 43 43 H 1.08999 * 109.47000 * 294.99879 * 15 12 10 44 44 H 1.00896 * 111.00731 * 56.04488 * 16 15 12 45 45 H 1.09001 * 109.46649 * 299.99354 * 17 16 15 46 46 H 1.08999 * 109.47228 * 59.99129 * 17 16 15 47 47 H 0.96999 * 119.99973 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6587 -0.0055 5 6 3.6622 -0.6760 -0.0033 6 6 4.9291 -1.4922 -0.0086 7 6 2.3922 -1.1738 0.0033 8 6 1.9913 -2.5920 0.0073 9 8 1.8256 -3.1742 1.0620 10 7 1.8029 -3.2422 -1.1582 11 6 1.9962 -2.5391 -2.4288 12 6 1.4048 -4.6521 -1.1544 13 1 1.3112 -5.0004 -0.1258 14 6 0.0608 -4.8046 -1.8693 15 6 2.4652 -5.4834 -1.8793 16 7 3.7785 -5.2439 -1.2662 17 6 4.8240 -6.0270 -1.9384 18 6 6.1540 -5.7556 -1.2840 19 8 6.2243 -4.9850 -0.3498 20 7 7.2655 -6.3688 -1.7368 21 6 8.4756 -6.1214 -1.1417 22 1 8.5381 -5.4354 -0.3099 23 6 9.6214 -6.7541 -1.6081 24 7 9.5452 -7.5892 -2.6199 25 14 11.2701 -6.4175 -0.7969 26 1 11.0873 -5.4461 0.3113 27 1 11.8247 -7.6853 -0.2581 28 1 12.2090 -5.8531 -1.7996 29 1 -0.3633 0.0034 1.0277 30 1 -0.3634 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5108 32 1 1.9895 2.1011 -0.0009 33 1 5.2295 -1.6903 -1.0375 34 1 5.7191 -0.9401 0.5007 35 1 4.7551 -2.4365 0.5073 36 1 3.0330 -2.6440 -2.7480 37 1 1.3382 -2.9675 -3.1849 38 1 1.7609 -1.4827 -2.2989 39 1 0.1548 -4.4563 -2.8979 40 1 -0.2356 -5.8535 -1.8661 41 1 -0.6947 -4.2123 -1.3529 42 1 2.2146 -6.5412 -1.7997 43 1 2.4968 -5.1955 -2.9301 44 1 3.7576 -5.4421 -0.2771 45 1 4.5898 -7.0887 -1.8595 46 1 4.8717 -5.7426 -2.9896 47 1 7.2092 -6.9853 -2.4836 48 1 10.3451 -8.0312 -2.9452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268061087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:45 Heat of formation + Delta-G solvation = -56.999693 kcal Electronic energy + Delta-G solvation = -30214.259775 eV Core-core repulsion = 26078.022870 eV Total energy + Delta-G solvation = -4136.236905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.53919 -39.73507 -38.24235 -36.69635 -34.65089 -34.01973 -33.70309 -32.48189 -31.40498 -31.13720 -28.12617 -27.58531 -26.86771 -26.42204 -25.01015 -23.70012 -22.96881 -20.71227 -19.79435 -19.28548 -18.85589 -17.86616 -17.58204 -16.80426 -16.22490 -16.01520 -15.47309 -15.35229 -15.07047 -14.54109 -14.42733 -13.99940 -13.92287 -13.72651 -13.49187 -13.40624 -13.36380 -12.98277 -12.86521 -12.71522 -12.63322 -12.50867 -12.31626 -12.29278 -12.19373 -11.93472 -11.69098 -11.49158 -11.42721 -11.29344 -11.05391 -10.87796 -10.34285 -10.22127 -9.89793 -9.51057 -9.36189 -8.59055 -8.42414 -8.38937 -8.02876 -7.94662 -6.41513 -3.82012 1.69125 2.19585 2.70305 2.88138 3.16422 3.17543 3.27119 3.34331 3.92211 4.08659 4.30405 4.48794 4.66323 4.79835 4.91336 5.00938 5.07342 5.11484 5.15042 5.21884 5.27435 5.40923 5.43542 5.46955 5.50852 5.54861 5.58570 5.65520 5.68653 5.79003 5.81081 5.82921 5.86474 5.91260 5.98208 6.03803 6.05336 6.27046 6.33768 6.43818 6.61866 7.11484 7.23480 7.46955 7.55734 7.67747 8.07251 8.32523 8.61975 9.18716 9.55325 10.06687 10.76406 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.003051 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.267191 B = 9175.571906 C =10745.834903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.154 4.154 3 C -0.048 4.048 4 O -0.175 6.175 5 C 0.060 3.940 6 C -0.077 4.077 7 C -0.231 4.231 8 C 0.604 3.396 9 O -0.538 6.538 10 N -0.584 5.584 11 C 0.084 3.916 12 C 0.137 3.863 13 H 0.100 0.900 14 C -0.158 4.158 15 C 0.049 3.951 16 N -0.662 5.662 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.203 0.797 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.350 0.650 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.410 11.160 -2.801 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C -0.114 4.114 4 O -0.072 6.072 5 C 0.008 3.992 6 C -0.133 4.133 7 C -0.235 4.235 8 C 0.392 3.608 9 O -0.415 6.415 10 N -0.316 5.316 11 C -0.059 4.059 12 C 0.033 3.967 13 H 0.118 0.882 14 C -0.217 4.217 15 C -0.082 4.082 16 N -0.295 5.295 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.464 6.464 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.219 0.781 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.170 0.830 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.927 12.006 -2.073 22.510 hybrid contribution 0.543 -1.214 -0.030 1.330 sum -18.384 10.792 -2.104 21.421 Atomic orbital electron populations 1.20142 0.88977 1.02385 1.02335 1.21283 0.96512 0.90791 1.06975 1.23523 0.79982 0.99296 1.08554 1.83745 1.29311 1.22363 1.71777 1.22893 0.96604 0.80230 0.99453 1.20492 0.90051 0.97954 1.04814 1.20881 0.93057 0.93795 1.15751 1.17185 0.75749 0.84596 0.83267 1.90767 1.51344 1.68313 1.31072 1.47450 1.67697 1.10530 1.05927 1.21675 1.02087 0.96833 0.85327 1.21102 0.92882 0.80875 1.01811 0.88204 1.22093 0.96363 1.02417 1.00827 1.22345 0.89488 0.97078 0.99280 1.60012 1.02129 1.59262 1.08087 1.21668 0.91940 0.95403 0.99148 1.19798 0.85078 0.85348 0.87021 1.90519 1.86118 1.38939 1.30780 1.41875 1.06344 1.40301 1.31693 1.19740 0.83379 1.24781 1.14726 0.87880 1.25251 0.99883 0.96304 0.96556 1.69618 1.30340 1.28886 1.25578 0.85821 0.81338 0.78250 0.79074 1.19201 1.20806 1.20776 0.91239 0.91389 0.91724 0.78074 0.89030 0.90394 0.87829 0.91928 0.91474 0.91447 0.92083 0.91304 0.92116 0.94477 0.90861 0.83001 0.94097 0.89847 0.77554 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.38 36.01 0.37 -0.36 16 2 C -0.15 -1.80 6.13 -102.49 -0.63 -2.43 16 3 C -0.05 -0.50 11.96 29.30 0.35 -0.15 16 4 O -0.18 -2.31 10.52 7.65 0.08 -2.23 16 5 C 0.06 0.87 7.37 -34.97 -0.26 0.61 16 6 C -0.08 -1.16 10.24 36.00 0.37 -0.79 16 7 C -0.23 -3.34 4.27 -103.28 -0.44 -3.78 16 8 C 0.60 9.47 7.11 -12.54 -0.09 9.38 16 9 O -0.54 -10.34 16.43 5.27 0.09 -10.25 16 10 N -0.58 -7.39 2.49 -175.23 -0.44 -7.83 16 11 C 0.08 0.87 9.42 59.85 0.56 1.43 16 12 C 0.14 1.59 2.88 -67.93 -0.20 1.39 16 13 H 0.10 1.37 6.90 -51.93 -0.36 1.01 16 14 C -0.16 -1.33 9.17 37.16 0.34 -0.99 16 15 C 0.05 0.58 4.98 -3.82 -0.02 0.56 16 16 N -0.66 -10.49 5.85 -115.06 -0.67 -11.16 16 17 C 0.05 0.88 6.17 -4.97 -0.03 0.84 16 18 C 0.44 10.16 7.82 -10.99 -0.09 10.08 16 19 O -0.58 -15.16 15.78 5.54 0.09 -15.07 16 20 N -0.57 -14.10 5.29 -10.96 -0.06 -14.16 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.85 7.93 -51.93 -0.41 1.43 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 38 H 0.07 0.68 6.68 -51.93 -0.35 0.33 16 39 H 0.06 0.44 6.66 -51.93 -0.35 0.10 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 44 H 0.35 6.26 8.43 -39.29 -0.33 5.93 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -33.24 405.21 -6.54 -39.77 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -7.44 Total: 14.63 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 0.01 Total: 7.95 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.44 Total: -56.90 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: 0.25 Total: -27.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.24 -6.54 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268061087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.227 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds