Wall clock time and date at job start Tue Mar 31 2020 20:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34177 * 127.02275 * 2 1 4 4 O 1.34213 * 109.12077 * 180.24971 * 3 2 1 5 5 C 1.33655 * 110.91035 * 359.72721 * 4 3 2 6 6 C 1.50698 * 125.80078 * 179.97438 * 5 4 3 7 7 C 1.36411 * 108.39675 * 0.02562 * 5 4 3 8 8 C 1.47377 * 127.19364 * 179.97438 * 7 5 4 9 9 O 1.21605 * 120.00589 * 90.29016 * 8 7 5 10 10 N 1.34784 * 119.99549 * 270.01938 * 8 7 5 11 11 C 1.46499 * 119.99893 * 359.97438 * 10 8 7 12 12 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 13 13 H 1.09004 * 109.46973 * 359.97438 * 12 10 8 14 14 C 1.52996 * 109.47349 * 119.99826 * 12 10 8 15 15 C 1.52998 * 109.47194 * 240.00124 * 12 10 8 16 16 N 1.46900 * 109.47137 * 55.00196 * 15 12 10 17 17 C 1.46903 * 110.99874 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47241 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99817 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00106 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99937 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99854 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99944 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99814 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47127 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47194 * 120.00051 * 25 23 21 28 28 H 1.48507 * 109.46685 * 239.99915 * 25 23 21 29 29 H 1.09005 * 109.46714 * 270.18773 * 1 2 3 30 30 H 1.09004 * 109.47380 * 30.18220 * 1 2 3 31 31 H 1.08992 * 109.47381 * 150.18916 * 1 2 3 32 32 H 1.08001 * 125.44065 * 359.94362 * 3 2 1 33 33 H 1.08999 * 109.47602 * 270.04545 * 6 5 4 34 34 H 1.09005 * 109.47412 * 30.04517 * 6 5 4 35 35 H 1.08999 * 109.47314 * 150.04603 * 6 5 4 36 36 H 1.08996 * 109.47008 * 90.00348 * 11 10 8 37 37 H 1.08997 * 109.46865 * 210.00034 * 11 10 8 38 38 H 1.08998 * 109.47058 * 329.99547 * 11 10 8 39 39 H 1.08998 * 109.47017 * 59.99612 * 14 12 10 40 40 H 1.08996 * 109.47637 * 180.02562 * 14 12 10 41 41 H 1.09009 * 109.47102 * 300.00533 * 14 12 10 42 42 H 1.09002 * 109.47360 * 174.99973 * 15 12 10 43 43 H 1.08999 * 109.47000 * 294.99879 * 15 12 10 44 44 H 1.00896 * 111.00731 * 56.04488 * 16 15 12 45 45 H 1.09001 * 109.46649 * 299.99354 * 17 16 15 46 46 H 1.08999 * 109.47228 * 59.99129 * 17 16 15 47 47 H 0.96999 * 119.99973 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6587 -0.0055 5 6 3.6622 -0.6760 -0.0033 6 6 4.9291 -1.4922 -0.0086 7 6 2.3922 -1.1738 0.0033 8 6 1.9913 -2.5920 0.0073 9 8 1.8256 -3.1742 1.0620 10 7 1.8029 -3.2422 -1.1582 11 6 1.9962 -2.5391 -2.4288 12 6 1.4048 -4.6521 -1.1544 13 1 1.3112 -5.0004 -0.1258 14 6 0.0608 -4.8046 -1.8693 15 6 2.4652 -5.4834 -1.8793 16 7 3.7785 -5.2439 -1.2662 17 6 4.8240 -6.0270 -1.9384 18 6 6.1540 -5.7556 -1.2840 19 8 6.2243 -4.9850 -0.3498 20 7 7.2655 -6.3688 -1.7368 21 6 8.4756 -6.1214 -1.1417 22 1 8.5381 -5.4354 -0.3099 23 6 9.6214 -6.7541 -1.6081 24 7 9.5452 -7.5892 -2.6199 25 14 11.2701 -6.4175 -0.7969 26 1 11.0873 -5.4461 0.3113 27 1 11.8247 -7.6853 -0.2581 28 1 12.2090 -5.8531 -1.7996 29 1 -0.3633 0.0034 1.0277 30 1 -0.3634 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5108 32 1 1.9895 2.1011 -0.0009 33 1 5.2295 -1.6903 -1.0375 34 1 5.7191 -0.9401 0.5007 35 1 4.7551 -2.4365 0.5073 36 1 3.0330 -2.6440 -2.7480 37 1 1.3382 -2.9675 -3.1849 38 1 1.7609 -1.4827 -2.2989 39 1 0.1548 -4.4563 -2.8979 40 1 -0.2356 -5.8535 -1.8661 41 1 -0.6947 -4.2123 -1.3529 42 1 2.2146 -6.5412 -1.7997 43 1 2.4968 -5.1955 -2.9301 44 1 3.7576 -5.4421 -0.2771 45 1 4.5898 -7.0887 -1.8595 46 1 4.8717 -5.7426 -2.9896 47 1 7.2092 -6.9853 -2.4836 48 1 10.3451 -8.0312 -2.9452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268061087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:43 Heat of formation + Delta-G solvation = -80.827131 kcal Electronic energy + Delta-G solvation = -30215.293010 eV Core-core repulsion = 26078.022870 eV Total energy + Delta-G solvation = -4137.270140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.53047 -40.85765 -40.06528 -37.90055 -36.14381 -35.55701 -34.87300 -33.55818 -33.23971 -32.33794 -29.07767 -28.93074 -27.81228 -27.36889 -26.66449 -24.92714 -24.21044 -21.71582 -21.03915 -20.71900 -20.01153 -19.81121 -18.59698 -18.00672 -17.64783 -17.16911 -16.82225 -16.53173 -16.32389 -16.24464 -15.91045 -15.30993 -15.11217 -15.06015 -14.66665 -14.56734 -14.19271 -14.15306 -14.03874 -13.82785 -13.79740 -13.55651 -13.51498 -13.35253 -13.26538 -13.12213 -13.03299 -12.87021 -12.75524 -12.53802 -12.38621 -12.26049 -12.12327 -11.77594 -11.49664 -11.10018 -10.36003 -10.31203 -9.99170 -9.59539 -9.40948 -9.28741 -8.46016 -5.93752 0.65640 1.27021 1.35928 1.41222 1.53152 1.55075 1.88520 2.08108 2.19115 2.29202 2.92942 3.21772 3.50428 3.56061 3.65630 3.87429 4.00790 4.14963 4.22047 4.29228 4.33051 4.36121 4.38914 4.51769 4.54211 4.57005 4.64157 4.68009 4.69898 4.73152 4.77590 4.82353 4.83601 4.96415 4.99445 5.05204 5.09920 5.20761 5.29011 5.42222 5.51894 5.64353 5.90473 6.12143 6.12608 6.31314 6.39691 6.62196 7.14768 7.17780 7.58831 8.14597 8.71772 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.003051 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.267191 B = 9175.571906 C =10745.834903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.169 4.169 3 C -0.030 4.030 4 O -0.182 6.182 5 C 0.037 3.963 6 C -0.065 4.065 7 C -0.242 4.242 8 C 0.597 3.403 9 O -0.588 6.588 10 N -0.577 5.577 11 C 0.084 3.916 12 C 0.134 3.866 13 H 0.072 0.928 14 C -0.148 4.148 15 C 0.052 3.948 16 N -0.675 5.675 17 C 0.067 3.933 18 C 0.439 3.561 19 O -0.616 6.616 20 N -0.575 5.575 21 C -0.328 4.328 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.250 0.750 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.335 0.665 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.962 12.072 -4.707 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.171 4.171 3 C -0.095 4.095 4 O -0.079 6.079 5 C -0.015 4.015 6 C -0.121 4.121 7 C -0.247 4.247 8 C 0.385 3.615 9 O -0.469 6.469 10 N -0.307 5.307 11 C -0.059 4.059 12 C 0.030 3.970 13 H 0.090 0.910 14 C -0.206 4.206 15 C -0.077 4.077 16 N -0.306 5.306 17 C -0.065 4.065 18 C 0.226 3.774 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.458 4.458 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.265 0.735 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.152 0.848 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.503 12.901 -4.053 24.561 hybrid contribution 0.944 -1.459 0.560 1.826 sum -19.559 11.442 -3.494 22.928 Atomic orbital electron populations 1.20194 0.86954 1.03663 1.02592 1.21645 0.97927 0.89800 1.07693 1.24449 0.78505 1.00942 1.05621 1.83737 1.30950 1.21340 1.71835 1.22601 0.96145 0.81044 1.01672 1.20202 0.91158 0.96788 1.04001 1.21086 0.93920 0.94118 1.15546 1.17502 0.75337 0.85195 0.83435 1.90730 1.53921 1.69390 1.32879 1.47562 1.66159 1.11002 1.05939 1.21808 1.02054 0.97254 0.84746 1.21224 0.94752 0.80093 1.00896 0.91008 1.22022 0.93753 1.03625 1.01191 1.22455 0.87221 0.98259 0.99798 1.60031 1.03916 1.59466 1.07210 1.21525 0.88758 0.96822 0.99415 1.20874 0.86616 0.83679 0.86190 1.90504 1.87036 1.40231 1.32435 1.41928 1.06329 1.40987 1.32026 1.19661 0.85251 1.25687 1.15189 0.90463 1.25985 1.02616 0.95749 0.96919 1.69672 1.31479 1.29048 1.26062 0.84920 0.77388 0.78212 0.78132 1.19910 1.19758 1.19552 0.91467 0.88149 0.92362 0.73455 0.89593 0.89637 0.91346 0.93254 0.88230 0.91063 0.90120 0.89658 0.92425 0.92640 0.88841 0.84778 0.91985 0.87549 0.77080 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.38 71.24 0.74 -0.48 16 2 C -0.17 -3.72 6.13 -18.49 -0.11 -3.84 16 3 C -0.03 -0.56 11.96 66.89 0.80 0.24 16 4 O -0.18 -4.67 10.52 4.47 0.05 -4.62 16 5 C 0.04 1.11 7.37 25.26 0.19 1.30 16 6 C -0.07 -2.13 10.24 71.24 0.73 -1.40 16 7 C -0.24 -7.16 4.27 -18.99 -0.08 -7.24 16 8 C 0.60 19.48 7.11 86.65 0.62 20.09 16 9 O -0.59 -24.13 16.43 -4.05 -0.07 -24.20 16 10 N -0.58 -14.50 2.49 -826.54 -2.05 -16.55 16 11 C 0.08 1.61 9.42 127.77 1.20 2.81 16 12 C 0.13 2.99 2.88 44.99 0.13 3.12 16 13 H 0.07 2.05 6.90 -2.38 -0.02 2.03 16 14 C -0.15 -2.09 9.17 71.98 0.66 -1.43 16 15 C 0.05 1.14 4.98 86.30 0.43 1.57 16 16 N -0.67 -21.39 5.85 -517.93 -3.03 -24.42 16 17 C 0.07 2.25 6.17 85.56 0.53 2.77 16 18 C 0.44 20.68 7.82 87.66 0.69 21.37 16 19 O -0.62 -33.83 15.78 -3.08 -0.05 -33.88 16 20 N -0.58 -29.34 5.29 -306.98 -1.62 -30.97 16 21 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 25 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.25 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.26 6.43 -2.39 -0.02 1.24 16 38 H 0.07 1.34 6.68 -2.39 -0.02 1.32 16 39 H 0.08 0.84 6.66 -2.39 -0.02 0.83 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.71 7.84 -2.39 -0.02 1.69 16 44 H 0.33 12.49 8.43 -89.70 -0.76 11.73 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 47 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -76.68 405.21 2.83 -73.85 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.50 Total: 44.12 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 7.79 Total: 20.81 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -6.42 Total: -121.44 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -0.07 Total: -62.69 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -76.68 2.83 -73.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268061087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.981 kcal (2) G-P(sol) polarization free energy of solvation -76.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds