Wall clock time and date at job start Tue Mar 31 2020 20:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34176 * 127.02512 * 2 1 4 4 O 1.34211 * 109.12704 * 180.26979 * 3 2 1 5 5 C 1.33651 * 110.90453 * 359.74568 * 4 3 2 6 6 C 1.50708 * 125.80013 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.40090 * 0.02562 * 5 4 3 8 8 C 1.47383 * 127.19188 * 179.97438 * 7 5 4 9 9 O 1.21613 * 120.00065 * 90.01936 * 8 7 5 10 10 N 1.34773 * 119.99685 * 270.02239 * 8 7 5 11 11 C 1.46500 * 119.99910 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.47452 * 324.99846 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99768 * 11 10 8 14 14 C 1.52997 * 109.47007 * 204.99627 * 11 10 8 15 15 N 1.46895 * 109.47252 * 54.99812 * 14 11 10 16 16 C 1.46903 * 110.99814 * 66.04472 * 15 14 11 17 17 C 1.46902 * 111.00168 * 189.99813 * 15 14 11 18 18 C 1.50702 * 109.46804 * 170.00208 * 17 15 14 19 19 O 1.21286 * 120.00255 * 0.02562 * 18 17 15 20 20 N 1.34782 * 119.99693 * 179.97438 * 18 17 15 21 21 C 1.37099 * 119.99832 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00041 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99800 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99905 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99878 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47444 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46928 * 119.99986 * 25 23 21 28 28 H 1.48501 * 109.47203 * 239.99851 * 25 23 21 29 29 H 1.08998 * 109.46496 * 270.13172 * 1 2 3 30 30 H 1.08996 * 109.46919 * 30.13307 * 1 2 3 31 31 H 1.08997 * 109.46910 * 150.13714 * 1 2 3 32 32 H 1.08004 * 125.43761 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46650 * 270.00235 * 6 5 4 34 34 H 1.09004 * 109.47050 * 29.99589 * 6 5 4 35 35 H 1.08998 * 109.47192 * 150.00442 * 6 5 4 36 36 H 0.97003 * 120.00095 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.46801 * 60.00058 * 13 11 10 38 38 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47050 * 299.99945 * 13 11 10 40 40 H 1.08998 * 109.46934 * 174.99981 * 14 11 10 41 41 H 1.09006 * 109.47500 * 294.99854 * 14 11 10 42 42 H 1.09004 * 109.47070 * 60.00180 * 16 15 14 43 43 H 1.09006 * 109.47277 * 180.02562 * 16 15 14 44 44 H 1.08993 * 109.47323 * 300.00028 * 16 15 14 45 45 H 1.08997 * 109.46974 * 289.99691 * 17 15 14 46 46 H 1.08998 * 109.47038 * 50.00523 * 17 15 14 47 47 H 0.97000 * 120.00171 * 0.02562 * 20 18 17 48 48 H 0.97006 * 119.99530 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6588 -0.0060 5 6 3.6623 -0.6759 -0.0045 6 6 4.9292 -1.4922 -0.0093 7 6 2.3923 -1.1738 0.0021 8 6 1.9914 -2.5921 0.0054 9 8 1.8307 -3.1761 1.0600 10 7 1.8029 -3.2417 -1.1603 11 6 1.4039 -4.6513 -1.1571 12 1 1.8756 -5.1606 -0.3168 13 6 -0.1173 -4.7505 -1.0247 14 6 1.8459 -5.3094 -2.4656 15 7 3.2893 -5.1097 -2.6510 16 6 4.0562 -5.8261 -1.6230 17 6 3.7082 -5.5162 -3.9991 18 6 5.1289 -5.0740 -4.2383 19 8 5.7331 -4.4792 -3.3710 20 7 5.7284 -5.3404 -5.4157 21 6 7.0207 -4.9376 -5.6335 22 1 7.5584 -4.4073 -4.8616 23 6 7.6385 -5.2118 -6.8475 24 7 6.9840 -5.8567 -7.7870 25 14 9.3990 -4.6625 -7.1446 26 1 9.9087 -3.9607 -5.9392 27 1 10.2477 -5.8492 -7.4219 28 1 9.4403 -3.7414 -8.3088 29 1 -0.3632 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3633 -0.8912 -0.5117 32 1 1.9896 2.1011 0.0004 33 1 5.2298 -1.6903 -1.0381 34 1 5.7191 -0.9400 0.5001 35 1 4.7550 -2.4364 0.5066 36 1 1.9307 -2.7757 -2.0014 37 1 -0.5890 -4.2412 -1.8651 38 1 -0.4142 -5.7992 -1.0228 39 1 -0.4322 -4.2816 -0.0925 40 1 1.6288 -6.3769 -2.4269 41 1 1.3068 -4.8591 -3.2991 42 1 3.8400 -6.8926 -1.6858 43 1 5.1217 -5.6609 -1.7834 44 1 3.7760 -5.4560 -0.6369 45 1 3.6456 -6.6008 -4.0874 46 1 3.0543 -5.0530 -4.7379 47 1 5.2453 -5.8164 -6.1092 48 1 7.4152 -6.0478 -8.6347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268729651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:24 Heat of formation + Delta-G solvation = -58.502170 kcal Electronic energy + Delta-G solvation = -29898.796109 eV Core-core repulsion = 25762.494052 eV Total energy + Delta-G solvation = -4136.302057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57088 -39.64978 -38.56304 -36.93787 -34.65877 -34.01677 -33.76985 -32.54889 -31.26997 -30.88813 -28.15767 -28.01582 -26.92125 -26.52268 -24.85599 -23.69914 -22.38513 -20.53427 -20.08541 -19.71472 -19.16780 -17.87694 -17.76452 -16.57253 -16.22094 -16.07722 -15.65797 -15.33413 -14.88542 -14.72187 -14.61896 -14.09545 -14.00867 -13.69281 -13.55606 -13.46768 -13.38420 -13.18425 -12.87693 -12.80929 -12.74997 -12.45958 -12.41298 -12.14735 -12.01771 -11.83125 -11.53313 -11.40605 -11.36266 -11.26157 -10.95575 -10.72910 -10.36261 -10.24639 -9.98822 -9.50579 -9.45804 -8.97798 -8.49900 -8.47341 -8.00293 -7.89019 -6.44054 -3.84712 1.62665 2.16356 2.63850 2.82475 3.14402 3.25313 3.31953 3.36324 3.88097 3.93748 4.22184 4.43480 4.71868 4.74897 4.87480 5.01076 5.07967 5.13531 5.20412 5.25482 5.27589 5.42179 5.43595 5.50870 5.55807 5.59712 5.61324 5.65909 5.69956 5.71880 5.74112 5.88091 5.93105 5.94871 5.97275 6.08060 6.19996 6.25613 6.31787 6.53729 6.57826 7.04006 7.22215 7.33072 7.53202 7.64031 8.04387 8.32453 8.59518 9.16187 9.52494 10.04002 10.73762 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.002978 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.699076 B = 9400.901908 C =10890.903095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.151 4.151 3 C -0.045 4.045 4 O -0.174 6.174 5 C 0.058 3.942 6 C -0.083 4.083 7 C -0.235 4.235 8 C 0.599 3.401 9 O -0.545 6.545 10 N -0.695 5.695 11 C 0.146 3.854 12 H 0.088 0.912 13 C -0.162 4.162 14 C 0.042 3.958 15 N -0.514 5.514 16 C 0.021 3.979 17 C 0.045 3.955 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.204 0.796 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.407 0.593 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.014 0.986 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 6.883 10.989 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.153 4.153 3 C -0.111 4.111 4 O -0.070 6.070 5 C 0.007 3.993 6 C -0.139 4.139 7 C -0.240 4.240 8 C 0.384 3.616 9 O -0.423 6.423 10 N -0.345 5.345 11 C 0.041 3.959 12 H 0.106 0.894 13 C -0.221 4.221 14 C -0.086 4.086 15 N -0.238 5.238 16 C -0.127 4.127 17 C -0.087 4.087 18 C 0.230 3.770 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.221 0.779 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.032 0.968 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.783 7.473 12.173 19.849 hybrid contribution 0.213 -0.752 -1.303 1.520 sum -13.569 6.721 10.869 18.640 Atomic orbital electron populations 1.20155 0.88858 1.02624 1.02302 1.21296 0.96609 0.90715 1.06653 1.23554 0.79834 0.99399 1.08359 1.83733 1.29445 1.22144 1.71705 1.22704 0.96337 0.80507 0.99793 1.20513 0.90610 0.97428 1.05339 1.20962 0.93099 0.93959 1.15942 1.17207 0.76004 0.84589 0.83760 1.90769 1.51785 1.68266 1.31430 1.45809 1.68621 1.11512 1.08560 1.20967 0.94436 0.81918 0.98558 0.89403 1.22156 0.95220 1.02226 1.02456 1.22498 0.89929 0.98938 0.97279 1.61570 1.02060 1.57903 1.02235 1.22566 1.01676 0.93971 0.94475 1.21882 0.97182 0.98632 0.90965 1.19709 0.87753 0.85492 0.84030 1.90473 1.66019 1.45232 1.44317 1.41882 1.13644 1.51015 1.13625 1.19733 0.88628 1.33950 1.00385 0.87869 1.25254 1.00225 0.97083 0.95399 1.69621 1.37890 1.40772 1.06061 0.85820 0.81852 0.78299 0.78498 1.19211 1.20801 1.20756 0.91237 0.91285 0.91558 0.77930 0.88074 0.90138 0.89078 0.75842 0.92313 0.91626 0.91909 0.93496 0.90271 0.96752 0.88556 0.92156 0.93496 0.89497 0.77553 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.38 36.01 0.37 -0.37 16 2 C -0.15 -1.76 6.38 -102.49 -0.65 -2.42 16 3 C -0.05 -0.48 11.96 29.30 0.35 -0.13 16 4 O -0.17 -2.23 10.52 7.67 0.08 -2.15 16 5 C 0.06 0.80 7.37 -34.96 -0.26 0.55 16 6 C -0.08 -1.05 10.24 36.01 0.37 -0.69 16 7 C -0.24 -3.29 6.07 -103.28 -0.63 -3.92 16 8 C 0.60 8.87 7.22 -12.54 -0.09 8.78 16 9 O -0.54 -9.71 16.77 5.27 0.09 -9.62 16 10 N -0.69 -8.84 4.80 -54.90 -0.26 -9.11 16 11 C 0.15 1.71 2.35 -67.93 -0.16 1.55 16 12 H 0.09 1.19 6.23 -51.93 -0.32 0.87 16 13 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 14 C 0.04 0.49 4.52 -3.83 -0.02 0.47 16 15 N -0.51 -7.79 4.22 -244.37 -1.03 -8.82 16 16 C 0.02 0.33 8.96 60.07 0.54 0.87 16 17 C 0.04 0.74 5.45 -4.97 -0.03 0.72 16 18 C 0.44 9.93 7.48 -10.98 -0.08 9.85 16 19 O -0.58 -14.57 13.91 5.55 0.08 -14.49 16 20 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 21 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 25 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.20 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.21 7.93 -51.93 -0.41 0.80 16 36 H 0.41 5.00 8.59 -40.82 -0.35 4.65 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 44 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 45 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 46 H 0.09 1.29 7.93 -51.93 -0.41 0.87 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -32.61 404.43 -6.94 -39.55 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -7.46 Total: 13.80 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.17 Total: 6.34 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.63 Total: -55.20 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: 0.25 Total: -26.26 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.61 -6.94 -39.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268729651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.953 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds