Wall clock time and date at job start Tue Mar 31 2020 20:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34176 * 127.02512 * 2 1 4 4 O 1.34211 * 109.12704 * 180.26979 * 3 2 1 5 5 C 1.33651 * 110.90453 * 359.74568 * 4 3 2 6 6 C 1.50708 * 125.80013 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.40090 * 0.02562 * 5 4 3 8 8 C 1.47383 * 127.19188 * 179.97438 * 7 5 4 9 9 O 1.21613 * 120.00065 * 90.01936 * 8 7 5 10 10 N 1.34773 * 119.99685 * 270.02239 * 8 7 5 11 11 C 1.46500 * 119.99910 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.47452 * 324.99846 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99768 * 11 10 8 14 14 C 1.52997 * 109.47007 * 204.99627 * 11 10 8 15 15 N 1.46895 * 109.47252 * 54.99812 * 14 11 10 16 16 C 1.46903 * 110.99814 * 66.04472 * 15 14 11 17 17 C 1.46902 * 111.00168 * 189.99813 * 15 14 11 18 18 C 1.50702 * 109.46804 * 170.00208 * 17 15 14 19 19 O 1.21286 * 120.00255 * 0.02562 * 18 17 15 20 20 N 1.34782 * 119.99693 * 179.97438 * 18 17 15 21 21 C 1.37099 * 119.99832 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00041 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99800 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99905 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99878 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47444 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46928 * 119.99986 * 25 23 21 28 28 H 1.48501 * 109.47203 * 239.99851 * 25 23 21 29 29 H 1.08998 * 109.46496 * 270.13172 * 1 2 3 30 30 H 1.08996 * 109.46919 * 30.13307 * 1 2 3 31 31 H 1.08997 * 109.46910 * 150.13714 * 1 2 3 32 32 H 1.08004 * 125.43761 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46650 * 270.00235 * 6 5 4 34 34 H 1.09004 * 109.47050 * 29.99589 * 6 5 4 35 35 H 1.08998 * 109.47192 * 150.00442 * 6 5 4 36 36 H 0.97003 * 120.00095 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.46801 * 60.00058 * 13 11 10 38 38 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47050 * 299.99945 * 13 11 10 40 40 H 1.08998 * 109.46934 * 174.99981 * 14 11 10 41 41 H 1.09006 * 109.47500 * 294.99854 * 14 11 10 42 42 H 1.09004 * 109.47070 * 60.00180 * 16 15 14 43 43 H 1.09006 * 109.47277 * 180.02562 * 16 15 14 44 44 H 1.08993 * 109.47323 * 300.00028 * 16 15 14 45 45 H 1.08997 * 109.46974 * 289.99691 * 17 15 14 46 46 H 1.08998 * 109.47038 * 50.00523 * 17 15 14 47 47 H 0.97000 * 120.00171 * 0.02562 * 20 18 17 48 48 H 0.97006 * 119.99530 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6588 -0.0060 5 6 3.6623 -0.6759 -0.0045 6 6 4.9292 -1.4922 -0.0093 7 6 2.3923 -1.1738 0.0021 8 6 1.9914 -2.5921 0.0054 9 8 1.8307 -3.1761 1.0600 10 7 1.8029 -3.2417 -1.1603 11 6 1.4039 -4.6513 -1.1571 12 1 1.8756 -5.1606 -0.3168 13 6 -0.1173 -4.7505 -1.0247 14 6 1.8459 -5.3094 -2.4656 15 7 3.2893 -5.1097 -2.6510 16 6 4.0562 -5.8261 -1.6230 17 6 3.7082 -5.5162 -3.9991 18 6 5.1289 -5.0740 -4.2383 19 8 5.7331 -4.4792 -3.3710 20 7 5.7284 -5.3404 -5.4157 21 6 7.0207 -4.9376 -5.6335 22 1 7.5584 -4.4073 -4.8616 23 6 7.6385 -5.2118 -6.8475 24 7 6.9840 -5.8567 -7.7870 25 14 9.3990 -4.6625 -7.1446 26 1 9.9087 -3.9607 -5.9392 27 1 10.2477 -5.8492 -7.4219 28 1 9.4403 -3.7414 -8.3088 29 1 -0.3632 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3633 -0.8912 -0.5117 32 1 1.9896 2.1011 0.0004 33 1 5.2298 -1.6903 -1.0381 34 1 5.7191 -0.9400 0.5001 35 1 4.7550 -2.4364 0.5066 36 1 1.9307 -2.7757 -2.0014 37 1 -0.5890 -4.2412 -1.8651 38 1 -0.4142 -5.7992 -1.0228 39 1 -0.4322 -4.2816 -0.0925 40 1 1.6288 -6.3769 -2.4269 41 1 1.3068 -4.8591 -3.2991 42 1 3.8400 -6.8926 -1.6858 43 1 5.1217 -5.6609 -1.7834 44 1 3.7760 -5.4560 -0.6369 45 1 3.6456 -6.6008 -4.0874 46 1 3.0543 -5.0530 -4.7379 47 1 5.2453 -5.8164 -6.1092 48 1 7.4152 -6.0478 -8.6347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268729651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:22 Heat of formation + Delta-G solvation = -82.174423 kcal Electronic energy + Delta-G solvation = -29899.822615 eV Core-core repulsion = 25762.494052 eV Total energy + Delta-G solvation = -4137.328563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.52008 -40.81419 -40.18431 -38.27721 -36.09285 -35.48786 -34.91235 -33.54043 -33.23033 -31.91333 -29.46986 -29.03149 -27.99949 -27.41001 -26.63742 -24.82111 -23.63445 -21.54363 -21.11799 -20.91950 -20.65354 -19.81323 -18.77504 -17.79242 -17.60193 -17.08404 -16.76702 -16.64198 -16.47746 -16.15180 -15.88998 -15.57619 -15.24478 -15.09105 -14.85019 -14.58400 -14.22753 -14.16072 -14.11917 -13.81670 -13.64168 -13.60298 -13.49389 -13.32705 -13.28302 -13.11746 -12.87817 -12.79967 -12.64459 -12.42456 -12.35984 -12.27807 -12.10969 -11.73255 -11.42797 -11.15857 -10.42703 -10.23502 -10.03988 -9.95376 -9.42926 -9.19339 -8.43903 -5.91328 0.63687 1.26224 1.37354 1.42793 1.50398 1.56142 1.89558 2.11273 2.29119 2.35705 2.77432 3.23877 3.46051 3.54124 3.74621 3.84044 3.99361 4.16080 4.20024 4.22965 4.35625 4.36682 4.43278 4.52958 4.54921 4.56283 4.59776 4.63982 4.71934 4.76653 4.77514 4.78092 4.81507 4.98481 5.00568 5.05368 5.18232 5.19233 5.28645 5.44488 5.50531 5.53643 5.89799 6.08103 6.09403 6.19980 6.55176 6.65118 7.17600 7.21576 7.62187 8.18232 8.73788 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.002978 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.699076 B = 9400.901908 C =10890.903095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.168 4.168 3 C -0.034 4.034 4 O -0.182 6.182 5 C 0.038 3.962 6 C -0.076 4.076 7 C -0.255 4.255 8 C 0.599 3.401 9 O -0.583 6.583 10 N -0.686 5.686 11 C 0.146 3.854 12 H 0.066 0.934 13 C -0.152 4.152 14 C 0.048 3.952 15 N -0.528 5.528 16 C 0.031 3.969 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.610 6.610 20 N -0.577 5.577 21 C -0.326 4.326 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.248 0.752 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.410 0.590 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.030 0.970 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.114 0.886 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 7.497 10.138 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.170 4.170 3 C -0.099 4.099 4 O -0.079 6.079 5 C -0.014 4.014 6 C -0.132 4.132 7 C -0.259 4.259 8 C 0.385 3.615 9 O -0.464 6.464 10 N -0.335 5.335 11 C 0.041 3.959 12 H 0.084 0.916 13 C -0.211 4.211 14 C -0.080 4.080 15 N -0.252 5.252 16 C -0.117 4.117 17 C -0.073 4.073 18 C 0.231 3.769 19 O -0.495 6.495 20 N -0.215 5.215 21 C -0.456 4.456 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.812 3.188 26 H -0.198 1.198 27 H -0.199 1.199 28 H -0.197 1.197 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.264 0.736 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.132 0.868 47 H 0.229 0.771 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.610 8.072 11.293 20.889 hybrid contribution 0.713 -0.914 -0.975 1.515 sum -14.897 7.158 10.317 19.483 Atomic orbital electron populations 1.20209 0.86983 1.03664 1.02730 1.21677 0.97999 0.89976 1.07316 1.24432 0.78581 1.00986 1.05900 1.83732 1.30886 1.21497 1.71744 1.22741 0.96400 0.81163 1.01090 1.20379 0.91286 0.97233 1.04284 1.21195 0.94063 0.94294 1.16347 1.17372 0.75465 0.84973 0.83666 1.90740 1.53806 1.69142 1.32713 1.45819 1.67622 1.11972 1.08080 1.21060 0.95894 0.80948 0.98017 0.91574 1.22071 0.93189 1.03590 1.02248 1.22572 0.87285 1.00403 0.97739 1.61486 1.04219 1.58271 1.01243 1.22346 0.99457 0.95059 0.94836 1.21756 0.93342 0.99848 0.92388 1.20787 0.89781 0.83752 0.82630 1.90466 1.67591 1.46311 1.45173 1.41943 1.13138 1.51819 1.14585 1.19655 0.90202 1.35246 1.00518 0.90364 1.25963 1.03676 0.96843 0.94809 1.69676 1.39200 1.41102 1.06355 0.84935 0.77498 0.78147 0.78171 1.19820 1.19867 1.19730 0.91077 0.88505 0.92230 0.73638 0.89709 0.88390 0.90319 0.75475 0.90638 0.89694 0.93595 0.91418 0.87973 0.95118 0.92466 0.92137 0.91519 0.86759 0.77124 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.38 71.24 0.74 -0.53 16 2 C -0.17 -3.72 6.38 -18.49 -0.12 -3.84 16 3 C -0.03 -0.64 11.96 66.89 0.80 0.16 16 4 O -0.18 -4.56 10.52 4.52 0.05 -4.51 16 5 C 0.04 1.06 7.37 25.26 0.19 1.25 16 6 C -0.08 -2.05 10.24 71.24 0.73 -1.32 16 7 C -0.25 -7.21 6.07 -18.99 -0.12 -7.32 16 8 C 0.60 18.13 7.22 86.65 0.63 18.76 16 9 O -0.58 -21.53 16.77 -4.07 -0.07 -21.60 16 10 N -0.69 -17.23 4.80 -445.84 -2.14 -19.37 16 11 C 0.15 3.21 2.35 44.99 0.11 3.32 16 12 H 0.07 1.78 6.23 -2.39 -0.01 1.77 16 13 C -0.15 -2.60 9.48 71.98 0.68 -1.91 16 14 C 0.05 0.96 4.52 86.30 0.39 1.35 16 15 N -0.53 -15.33 4.22 -927.05 -3.92 -19.24 16 16 C 0.03 0.99 8.96 127.69 1.14 2.13 16 17 C 0.06 1.81 5.45 85.56 0.47 2.28 16 18 C 0.44 19.94 7.48 87.66 0.66 20.60 16 19 O -0.61 -31.86 13.91 -3.05 -0.04 -31.90 16 20 N -0.58 -28.54 5.29 -306.98 -1.62 -30.16 16 21 C -0.33 -18.11 9.68 84.04 0.81 -17.30 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 25 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.25 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.52 16 34 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.08 2.28 7.93 -2.39 -0.02 2.26 16 36 H 0.41 9.80 8.59 -92.71 -0.80 9.00 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.16 8.12 -2.39 -0.02 1.15 16 41 H 0.10 1.66 7.93 -2.38 -0.02 1.64 16 42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 2.28 5.82 -2.38 -0.01 2.27 16 44 H 0.06 1.89 6.58 -2.39 -0.02 1.87 16 45 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 46 H 0.11 3.02 7.93 -2.39 -0.02 3.00 16 47 H 0.40 18.60 7.90 -92.71 -0.73 17.86 16 48 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 Total: -1.00 -73.41 404.43 1.60 -71.81 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.54 Total: 41.79 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 7.57 Total: 17.38 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -7.39 Total: -117.53 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -0.06 Total: -58.01 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -73.41 1.60 -71.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268729651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.366 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds