Wall clock time and date at job start Tue Mar 31 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00061 * 2 1 4 4 C 1.53003 * 109.47599 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46769 * 64.99641 * 4 3 2 6 6 C 1.36936 * 120.00063 * 270.00118 * 5 4 3 7 7 H 1.07996 * 119.99711 * 138.38744 * 6 5 4 8 8 C 1.38812 * 120.00145 * 318.38198 * 6 5 4 9 9 N 1.31618 * 119.99847 * 167.17271 * 8 6 5 10 10 Si 1.86799 * 119.99980 * 347.17939 * 8 6 5 11 11 H 1.48503 * 109.47208 * 92.18803 * 10 8 6 12 12 H 1.48500 * 109.47089 * 212.18377 * 10 8 6 13 13 H 1.48498 * 109.47206 * 332.18826 * 10 8 6 14 14 C 1.46503 * 119.99740 * 90.00878 * 5 4 3 15 15 C 1.53035 * 109.45980 * 123.90966 * 14 5 4 16 16 C 1.53197 * 109.30984 * 181.37995 * 15 14 5 17 17 N 1.46921 * 108.78071 * 305.37024 * 16 15 14 18 18 C 1.34775 * 120.62791 * 233.58618 * 17 16 15 19 19 O 1.21684 * 120.00169 * 5.89396 * 18 17 16 20 20 C 1.46725 * 119.99593 * 185.61244 * 18 17 16 21 21 O 1.35337 * 126.64644 * 6.59397 * 20 18 17 22 22 C 1.33668 * 107.68413 * 179.83551 * 21 20 18 23 23 N 1.30613 * 109.15591 * 0.43074 * 22 21 20 24 24 C 1.33693 * 108.99528 * 359.73229 * 23 22 21 25 25 C 1.50699 * 126.27569 * 179.97438 * 24 23 22 26 26 C 1.46926 * 118.74013 * 53.85228 * 17 16 15 27 27 C 1.53041 * 109.45777 * 243.97887 * 14 5 4 28 28 H 1.08996 * 109.47746 * 59.99830 * 1 2 3 29 29 H 1.09005 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47119 * 299.99841 * 1 2 3 31 31 H 1.09002 * 109.47166 * 59.99888 * 3 2 1 32 32 H 1.09010 * 109.47128 * 300.00228 * 3 2 1 33 33 H 1.09003 * 109.47015 * 305.00029 * 4 3 2 34 34 H 1.08998 * 109.47550 * 184.99975 * 4 3 2 35 35 H 0.96999 * 119.99879 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46203 * 3.93421 * 14 5 4 37 37 H 1.09002 * 109.49927 * 61.43370 * 15 14 5 38 38 H 1.08993 * 109.50012 * 301.33528 * 15 14 5 39 39 H 1.09003 * 109.58358 * 185.57484 * 16 15 14 40 40 H 1.09004 * 109.70144 * 65.22881 * 16 15 14 41 41 H 1.08002 * 125.42229 * 180.15593 * 22 21 20 42 42 H 1.08999 * 109.47232 * 270.03948 * 25 24 23 43 43 H 1.09004 * 109.47239 * 30.04353 * 25 24 23 44 44 H 1.09007 * 109.47159 * 150.03814 * 25 24 23 45 45 H 1.09000 * 109.58154 * 65.92993 * 26 17 16 46 46 H 1.08998 * 109.58297 * 186.35537 * 26 17 16 47 47 H 1.09001 * 109.49668 * 298.56492 * 27 14 5 48 48 H 1.08996 * 109.49912 * 58.65965 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0967 -0.7970 -1.3369 7 1 3.7606 -1.3152 -2.2227 8 6 4.6516 -1.5108 -0.2836 9 7 4.5420 -2.8219 -0.2472 10 14 5.5537 -0.6106 1.0822 11 1 4.6044 -0.2989 2.1808 12 1 6.6479 -1.4693 1.6024 13 1 6.1258 0.6518 0.5492 14 6 4.2863 1.4007 -2.4148 15 6 5.7141 1.1118 -2.8837 16 6 6.0475 2.0125 -4.0772 17 7 5.0224 1.8241 -5.1128 18 6 5.3720 1.5066 -6.3751 19 8 6.5348 1.2682 -6.6428 20 6 4.3493 1.4425 -7.4253 21 8 3.0477 1.7941 -7.3079 22 6 2.4629 1.5875 -8.4920 23 7 3.3466 1.1154 -9.3299 24 6 4.5250 1.0117 -8.7070 25 6 5.8115 0.5101 -9.3105 26 6 3.6095 1.9942 -4.7475 27 6 3.3032 1.0882 -3.5453 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8515 0.5683 0.8410 34 1 3.9785 2.1766 0.0889 35 1 4.9294 -3.3207 0.4890 36 1 4.2003 2.4518 -2.1393 37 1 5.7943 0.0668 -3.1831 38 1 6.4117 1.3123 -2.0706 39 1 7.0249 1.7425 -4.4770 40 1 6.0582 3.0551 -3.7591 41 1 1.4239 1.7764 -8.7185 42 1 5.8841 -0.5680 -9.1671 43 1 5.8253 0.7365 -10.3767 44 1 6.6559 0.9990 -8.8244 45 1 3.4237 3.0347 -4.4811 46 1 2.9779 1.7120 -5.5899 47 1 3.4061 0.0434 -3.8385 48 1 2.2848 1.2719 -3.2030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269639669.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:51 Heat of formation + Delta-G solvation = -10.406765 kcal Electronic energy + Delta-G solvation = -30934.338311 eV Core-core repulsion = 26800.121827 eV Total energy + Delta-G solvation = -4134.216484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.62339 -39.90839 -37.93825 -37.03980 -35.68478 -34.96646 -32.24446 -31.77080 -31.14292 -30.67254 -28.61461 -27.80165 -25.75568 -25.26189 -23.85776 -23.20013 -22.89803 -21.77503 -21.23368 -20.26915 -19.25060 -17.53652 -17.14492 -16.84775 -16.41520 -16.07684 -15.89431 -15.47406 -14.96636 -14.87708 -14.66716 -14.33723 -14.16123 -14.02558 -13.53842 -13.42354 -13.32375 -13.09454 -12.85182 -12.49878 -12.31171 -12.29061 -12.01842 -11.86481 -11.64207 -11.41640 -11.26143 -11.05197 -10.77893 -10.73984 -10.65678 -10.54176 -10.27934 -10.09304 -9.91115 -9.61793 -9.42078 -9.12487 -8.94756 -8.55252 -8.40172 -6.75190 -5.84702 -3.36506 0.71496 2.28483 2.29482 2.98690 3.13662 3.34380 3.46804 3.50822 3.87088 4.45142 4.49204 4.58775 4.59592 4.80118 5.00939 5.23279 5.31708 5.36280 5.39527 5.47380 5.57171 5.60150 5.63451 5.64465 5.72596 5.72859 5.77346 5.86078 5.87911 5.90562 6.04707 6.06134 6.07606 6.11433 6.15185 6.21747 6.22951 6.36696 6.51020 6.63466 6.72207 6.95016 7.05150 7.26303 7.45603 7.91161 8.01458 8.18525 8.50197 9.03154 9.80504 10.16430 11.30831 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.003554 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.119505 B = 7877.077773 C = 8761.832150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.349 6.349 3 C 0.047 3.953 4 C 0.132 3.868 5 N -0.596 5.596 6 C -0.244 4.244 7 H 0.075 0.925 8 C 0.041 3.959 9 N -0.908 5.908 10 Si 0.887 3.113 11 H -0.288 1.288 12 H -0.306 1.306 13 H -0.272 1.272 14 C 0.181 3.819 15 C -0.138 4.138 16 C 0.114 3.886 17 N -0.592 5.592 18 C 0.605 3.395 19 O -0.522 6.522 20 C -0.106 4.106 21 O -0.183 6.183 22 C 0.190 3.810 23 N -0.494 5.494 24 C 0.075 3.925 25 C -0.083 4.083 26 C 0.096 3.904 27 C -0.138 4.138 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.254 0.746 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 13.242 -10.909 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.032 4.032 4 C 0.006 3.994 5 N -0.317 5.317 6 C -0.373 4.373 7 H 0.092 0.908 8 C -0.159 4.159 9 N -0.550 5.550 10 Si 0.720 3.280 11 H -0.216 1.216 12 H -0.235 1.235 13 H -0.197 1.197 14 C 0.074 3.926 15 C -0.178 4.178 16 C -0.008 4.008 17 N -0.324 5.324 18 C 0.392 3.608 19 O -0.400 6.400 20 C -0.160 4.160 21 O -0.069 6.069 22 C -0.035 4.035 23 N -0.223 5.223 24 C -0.048 4.048 25 C -0.140 4.140 26 C -0.026 4.026 27 C -0.178 4.178 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.269 0.731 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.425 12.649 -11.479 17.645 hybrid contribution -0.234 0.786 1.630 1.824 sum -4.660 13.435 -9.850 17.298 Atomic orbital electron populations 1.22641 0.83774 1.01873 0.98291 1.88286 1.16930 1.26608 1.94799 1.23287 0.97431 0.84999 0.97525 1.21390 0.90288 0.96517 0.91191 1.44090 1.76259 1.03745 1.07570 1.18468 1.34430 0.79719 1.04662 0.90768 1.25420 0.97331 0.94862 0.98253 1.69775 1.46899 1.05860 1.32440 0.86816 0.79229 0.79454 0.82538 1.21616 1.23502 1.19680 1.20322 0.91609 0.93120 0.87595 1.22302 0.98783 1.01010 0.95659 1.21821 0.91546 0.99598 0.87825 1.48032 1.08777 1.67382 1.08160 1.16462 0.85744 0.77689 0.80894 1.90825 1.17263 1.50885 1.81070 1.23006 0.82693 1.11941 0.98380 1.84703 1.21194 1.65508 1.35544 1.28405 1.00651 0.96075 0.78354 1.70342 1.00159 1.18343 1.33479 1.22046 0.95336 0.97800 0.89630 1.20413 0.90834 1.01929 1.00812 1.22379 0.80430 1.00230 0.99576 1.22446 1.00439 1.00313 0.94621 0.95232 0.90348 0.95569 0.95502 0.94511 0.92214 0.92764 0.92985 0.93157 0.90031 0.90984 0.89127 0.91661 0.73079 0.89997 0.90605 0.88454 0.91512 0.88626 0.90770 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.40 10.18 -35.23 -0.36 -7.76 16 3 C 0.05 0.86 6.28 37.16 0.23 1.09 16 4 C 0.13 2.68 4.79 -4.04 -0.02 2.66 16 5 N -0.60 -12.96 1.98 -165.61 -0.33 -13.29 16 6 C -0.24 -6.46 8.11 -15.06 -0.12 -6.58 16 7 H 0.07 2.20 7.24 -52.49 -0.38 1.82 16 8 C 0.04 1.16 5.42 -17.43 -0.09 1.07 16 9 N -0.91 -27.79 13.97 55.49 0.78 -27.02 16 10 Si 0.89 22.17 24.72 -169.99 -4.20 17.96 16 11 H -0.29 -7.11 6.69 56.52 0.38 -6.73 16 12 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 13 H -0.27 -6.41 7.05 56.52 0.40 -6.01 16 14 C 0.18 3.19 2.59 -67.89 -0.18 3.02 16 15 C -0.14 -2.42 5.24 -26.61 -0.14 -2.56 16 16 C 0.11 1.66 6.44 -3.71 -0.02 1.64 16 17 N -0.59 -8.71 2.97 -174.03 -0.52 -9.22 16 18 C 0.61 9.43 7.66 -12.83 -0.10 9.33 16 19 O -0.52 -9.06 14.19 5.20 0.07 -8.99 16 20 C -0.11 -1.47 6.82 -36.84 -0.25 -1.72 16 21 O -0.18 -2.10 7.39 4.43 0.03 -2.07 16 22 C 0.19 1.76 13.21 52.24 0.69 2.45 16 23 N -0.49 -6.07 11.26 -10.88 -0.12 -6.19 16 24 C 0.08 1.01 7.16 -82.46 -0.59 0.42 16 25 C -0.08 -0.96 9.95 36.00 0.36 -0.61 16 26 C 0.10 1.27 6.20 -3.49 -0.02 1.25 16 27 C -0.14 -2.24 5.38 -26.39 -0.14 -2.38 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 1.39 3.00 -51.93 -0.16 1.23 16 34 H 0.05 0.94 7.89 -51.93 -0.41 0.53 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.05 0.79 7.77 -51.93 -0.40 0.38 16 37 H 0.08 1.70 7.63 -51.93 -0.40 1.30 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.25 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.21 6.35 -51.92 -0.33 0.88 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 1.21 4.13 -53.42 -0.22 0.98 16 47 H 0.07 1.44 7.23 -51.93 -0.38 1.06 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -33.93 377.93 -5.50 -39.43 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.27 Total: 0.75 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 0.71 Total: 10.69 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.19 Total: -55.72 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.25 Total: -18.82 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.20 Total: 17.96 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.93 -5.50 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269639669.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.026 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds