Wall clock time and date at job start Tue Mar 31 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00061 * 2 1 4 4 C 1.53003 * 109.47599 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46769 * 64.99641 * 4 3 2 6 6 C 1.36936 * 120.00063 * 270.00118 * 5 4 3 7 7 H 1.07996 * 119.99711 * 138.38744 * 6 5 4 8 8 C 1.38812 * 120.00145 * 318.38198 * 6 5 4 9 9 N 1.31618 * 119.99847 * 167.17271 * 8 6 5 10 10 Si 1.86799 * 119.99980 * 347.17939 * 8 6 5 11 11 H 1.48503 * 109.47208 * 92.18803 * 10 8 6 12 12 H 1.48500 * 109.47089 * 212.18377 * 10 8 6 13 13 H 1.48498 * 109.47206 * 332.18826 * 10 8 6 14 14 C 1.46503 * 119.99740 * 90.00878 * 5 4 3 15 15 C 1.53035 * 109.45980 * 123.90966 * 14 5 4 16 16 C 1.53197 * 109.30984 * 181.37995 * 15 14 5 17 17 N 1.46921 * 108.78071 * 305.37024 * 16 15 14 18 18 C 1.34775 * 120.62791 * 233.58618 * 17 16 15 19 19 O 1.21684 * 120.00169 * 5.89396 * 18 17 16 20 20 C 1.46725 * 119.99593 * 185.61244 * 18 17 16 21 21 O 1.35337 * 126.64644 * 6.59397 * 20 18 17 22 22 C 1.33668 * 107.68413 * 179.83551 * 21 20 18 23 23 N 1.30613 * 109.15591 * 0.43074 * 22 21 20 24 24 C 1.33693 * 108.99528 * 359.73229 * 23 22 21 25 25 C 1.50699 * 126.27569 * 179.97438 * 24 23 22 26 26 C 1.46926 * 118.74013 * 53.85228 * 17 16 15 27 27 C 1.53041 * 109.45777 * 243.97887 * 14 5 4 28 28 H 1.08996 * 109.47746 * 59.99830 * 1 2 3 29 29 H 1.09005 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47119 * 299.99841 * 1 2 3 31 31 H 1.09002 * 109.47166 * 59.99888 * 3 2 1 32 32 H 1.09010 * 109.47128 * 300.00228 * 3 2 1 33 33 H 1.09003 * 109.47015 * 305.00029 * 4 3 2 34 34 H 1.08998 * 109.47550 * 184.99975 * 4 3 2 35 35 H 0.96999 * 119.99879 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46203 * 3.93421 * 14 5 4 37 37 H 1.09002 * 109.49927 * 61.43370 * 15 14 5 38 38 H 1.08993 * 109.50012 * 301.33528 * 15 14 5 39 39 H 1.09003 * 109.58358 * 185.57484 * 16 15 14 40 40 H 1.09004 * 109.70144 * 65.22881 * 16 15 14 41 41 H 1.08002 * 125.42229 * 180.15593 * 22 21 20 42 42 H 1.08999 * 109.47232 * 270.03948 * 25 24 23 43 43 H 1.09004 * 109.47239 * 30.04353 * 25 24 23 44 44 H 1.09007 * 109.47159 * 150.03814 * 25 24 23 45 45 H 1.09000 * 109.58154 * 65.92993 * 26 17 16 46 46 H 1.08998 * 109.58297 * 186.35537 * 26 17 16 47 47 H 1.09001 * 109.49668 * 298.56492 * 27 14 5 48 48 H 1.08996 * 109.49912 * 58.65965 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0967 -0.7970 -1.3369 7 1 3.7606 -1.3152 -2.2227 8 6 4.6516 -1.5108 -0.2836 9 7 4.5420 -2.8219 -0.2472 10 14 5.5537 -0.6106 1.0822 11 1 4.6044 -0.2989 2.1808 12 1 6.6479 -1.4693 1.6024 13 1 6.1258 0.6518 0.5492 14 6 4.2863 1.4007 -2.4148 15 6 5.7141 1.1118 -2.8837 16 6 6.0475 2.0125 -4.0772 17 7 5.0224 1.8241 -5.1128 18 6 5.3720 1.5066 -6.3751 19 8 6.5348 1.2682 -6.6428 20 6 4.3493 1.4425 -7.4253 21 8 3.0477 1.7941 -7.3079 22 6 2.4629 1.5875 -8.4920 23 7 3.3466 1.1154 -9.3299 24 6 4.5250 1.0117 -8.7070 25 6 5.8115 0.5101 -9.3105 26 6 3.6095 1.9942 -4.7475 27 6 3.3032 1.0882 -3.5453 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8515 0.5683 0.8410 34 1 3.9785 2.1766 0.0889 35 1 4.9294 -3.3207 0.4890 36 1 4.2003 2.4518 -2.1393 37 1 5.7943 0.0668 -3.1831 38 1 6.4117 1.3123 -2.0706 39 1 7.0249 1.7425 -4.4770 40 1 6.0582 3.0551 -3.7591 41 1 1.4239 1.7764 -8.7185 42 1 5.8841 -0.5680 -9.1671 43 1 5.8253 0.7365 -10.3767 44 1 6.6559 0.9990 -8.8244 45 1 3.4237 3.0347 -4.4811 46 1 2.9779 1.7120 -5.5899 47 1 3.4061 0.0434 -3.8385 48 1 2.2848 1.2719 -3.2030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269639669.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:51 Heat of formation + Delta-G solvation = -37.005812 kcal Electronic energy + Delta-G solvation = -30935.491732 eV Core-core repulsion = 26800.121827 eV Total energy + Delta-G solvation = -4135.369905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.51786 -41.11145 -39.38012 -38.40180 -36.92623 -36.18276 -33.90213 -33.12705 -32.53958 -31.86698 -30.09134 -28.90938 -27.15533 -26.68512 -25.16508 -24.51181 -24.06306 -22.94369 -22.57174 -21.55907 -20.59280 -18.80317 -18.17208 -18.06026 -17.81249 -17.47771 -17.14054 -17.02512 -16.44530 -16.10886 -15.87465 -15.71813 -15.57083 -15.21298 -14.89710 -14.77898 -14.48676 -14.27464 -14.25513 -14.06643 -13.75445 -13.41542 -13.35371 -13.20264 -13.01120 -12.87495 -12.54008 -12.29439 -12.21671 -12.15279 -12.14633 -11.90758 -11.77571 -11.54842 -11.28969 -11.19324 -11.14084 -10.55580 -10.31676 -10.13875 -9.65149 -8.59350 -8.01732 -5.48839 -0.24229 1.33932 1.35612 1.40329 1.43123 1.53030 1.88879 2.07171 2.51499 3.11350 3.13993 3.20131 3.41526 3.45701 3.66875 3.93890 4.08154 4.16012 4.24325 4.34882 4.36551 4.41759 4.42592 4.45967 4.57682 4.60614 4.61122 4.65413 4.67040 4.71829 4.76241 4.77882 4.84081 4.84349 4.89089 5.00193 5.10067 5.11730 5.17628 5.31957 5.41906 5.56103 5.59347 6.09807 6.16549 6.33170 6.51829 6.61240 6.86605 7.14268 7.76917 8.15426 9.18344 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.003554 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.119505 B = 7877.077773 C = 8761.832150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.606 5.606 6 C -0.204 4.204 7 H 0.026 0.974 8 C -0.026 4.026 9 N -0.967 5.967 10 Si 0.951 3.049 11 H -0.283 1.283 12 H -0.325 1.325 13 H -0.245 1.245 14 C 0.175 3.825 15 C -0.131 4.131 16 C 0.122 3.878 17 N -0.596 5.596 18 C 0.600 3.400 19 O -0.551 6.551 20 C -0.134 4.134 21 O -0.183 6.183 22 C 0.221 3.779 23 N -0.524 5.524 24 C 0.072 3.928 25 C -0.082 4.082 26 C 0.105 3.895 27 C -0.127 4.127 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.095 0.905 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.308 0.692 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.026 0.974 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 17.527 -11.358 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.321 6.321 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.328 5.328 6 C -0.335 4.335 7 H 0.043 0.957 8 C -0.220 4.220 9 N -0.614 5.614 10 Si 0.782 3.218 11 H -0.211 1.211 12 H -0.255 1.255 13 H -0.168 1.168 14 C 0.069 3.931 15 C -0.171 4.171 16 C 0.000 4.000 17 N -0.327 5.327 18 C 0.388 3.612 19 O -0.432 6.432 20 C -0.188 4.188 21 O -0.071 6.071 22 C -0.003 4.003 23 N -0.253 5.253 24 C -0.052 4.052 25 C -0.139 4.139 26 C -0.016 4.016 27 C -0.167 4.167 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.323 0.677 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.045 0.955 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.265 17.006 -11.945 21.706 hybrid contribution 0.145 -0.538 1.612 1.705 sum -6.120 16.468 -10.333 20.382 Atomic orbital electron populations 1.22775 0.81379 1.02295 1.00278 1.88207 1.19824 1.28846 1.95258 1.23275 0.95615 0.84313 0.99845 1.21573 0.92366 0.97586 0.88874 1.44200 1.76815 1.02250 1.09488 1.18134 1.31188 0.82116 1.02034 0.95672 1.26065 0.99213 0.95339 1.01375 1.69951 1.49772 1.07882 1.33760 0.85769 0.77392 0.78780 0.79815 1.21086 1.25494 1.16841 1.20604 0.91582 0.94425 0.86453 1.22179 0.99064 0.98890 0.96947 1.21741 0.91151 1.00662 0.86403 1.48130 1.09431 1.67170 1.07972 1.16699 0.85880 0.77110 0.81465 1.90799 1.18606 1.52134 1.81700 1.22635 0.83551 1.14518 0.98108 1.84655 1.20158 1.65729 1.36540 1.29695 1.01841 0.92059 0.76694 1.70386 1.00255 1.20242 1.34387 1.22316 0.96171 0.96974 0.89701 1.20413 0.90142 1.01685 1.01683 1.22415 0.79644 1.01226 0.98336 1.22266 1.00496 0.98349 0.95594 0.93419 0.90923 0.93175 0.92601 0.92452 0.95180 0.88679 0.93731 0.88972 0.94894 0.91253 0.90146 0.87902 0.67697 0.90044 0.88896 0.89577 0.87893 0.87782 0.95468 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.40 -16.62 10.18 -148.98 -1.52 -18.13 16 3 C 0.05 1.59 6.28 71.98 0.45 2.04 16 4 C 0.12 4.55 4.79 86.38 0.41 4.96 16 5 N -0.61 -25.72 1.98 -677.87 -1.34 -27.06 16 6 C -0.20 -11.23 8.11 84.03 0.68 -10.55 16 7 H 0.03 1.63 7.24 -2.91 -0.02 1.61 16 8 C -0.03 -1.53 5.42 84.86 0.46 -1.07 16 9 N -0.97 -62.80 13.97 21.65 0.30 -62.50 16 10 Si 0.95 46.93 24.72 68.60 1.70 48.62 16 11 H -0.28 -13.55 6.69 99.48 0.67 -12.89 16 12 H -0.32 -16.79 7.11 99.48 0.71 -16.09 16 13 H -0.24 -10.79 7.05 99.48 0.70 -10.08 16 14 C 0.18 5.81 2.59 45.02 0.12 5.93 16 15 C -0.13 -4.53 5.24 30.67 0.16 -4.37 16 16 C 0.12 3.36 6.44 86.36 0.56 3.92 16 17 N -0.60 -16.69 2.97 -822.73 -2.44 -19.13 16 18 C 0.60 18.54 7.66 86.46 0.66 19.20 16 19 O -0.55 -19.60 14.19 -4.30 -0.06 -19.66 16 20 C -0.13 -3.58 6.82 24.05 0.16 -3.42 16 21 O -0.18 -3.72 7.39 -7.06 -0.05 -3.77 16 22 C 0.22 3.31 13.21 130.42 1.72 5.03 16 23 N -0.52 -11.74 11.26 -303.12 -3.41 -15.15 16 24 C 0.07 1.86 7.16 41.83 0.30 2.16 16 25 C -0.08 -1.92 9.95 71.24 0.71 -1.21 16 26 C 0.11 2.48 6.20 86.51 0.54 3.02 16 27 C -0.13 -3.96 5.38 30.82 0.17 -3.79 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.03 1.34 3.00 -2.39 -0.01 1.33 16 34 H 0.10 2.79 7.89 -2.39 -0.02 2.77 16 35 H 0.25 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.09 2.38 7.77 -2.39 -0.02 2.36 16 37 H 0.03 1.43 7.63 -2.39 -0.02 1.42 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.08 2.40 7.00 -2.39 -0.02 2.39 16 40 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.31 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.09 2.21 6.35 -2.38 -0.02 2.19 16 45 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.10 2.34 4.13 -26.02 -0.11 2.23 16 47 H 0.03 1.09 7.23 -2.39 -0.02 1.07 16 48 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -81.43 377.93 2.35 -79.08 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.83 Total: 13.74 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 8.35 Total: 23.97 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -6.89 Total: -123.85 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.63 Total: -41.57 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.70 Total: 48.62 kcal Total: -81.43 2.35 -79.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269639669.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.073 kcal (2) G-P(sol) polarization free energy of solvation -81.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds