Wall clock time and date at job start Tue Mar 31 2020 21:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35453 * 126.77196 * 2 1 4 4 C 1.41388 * 103.98490 * 180.09532 * 3 2 1 5 5 C 1.50700 * 126.80335 * 179.88822 * 4 3 2 6 6 O 1.42901 * 109.46774 * 359.70490 * 5 4 3 7 7 C 1.42908 * 113.99646 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46887 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99538 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7 12 12 H 1.08999 * 109.47228 * 325.27715 * 11 10 8 13 13 C 1.52999 * 109.47341 * 85.27876 * 11 10 8 14 14 C 1.52997 * 109.47188 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46860 * 299.99296 * 14 13 11 16 16 H 1.08999 * 109.47459 * 300.00495 * 15 14 13 17 17 N 1.46499 * 109.46968 * 180.02562 * 15 14 13 18 18 C 1.36934 * 120.00173 * 85.00277 * 17 15 14 19 19 H 1.08003 * 120.00103 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00204 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46668 * 60.00150 * 22 20 18 24 24 H 1.48499 * 109.47103 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47083 * 300.00503 * 22 20 18 26 26 C 1.53003 * 109.46811 * 60.01012 * 15 14 13 27 27 C 1.53001 * 109.47193 * 205.27836 * 11 10 8 28 28 N 1.30175 * 106.39301 * 359.62068 * 4 3 2 29 29 O 1.20918 * 111.60541 * 0.24662 * 28 4 3 30 30 H 1.09008 * 109.46733 * 180.30661 * 1 2 3 31 31 H 1.08996 * 109.47354 * 300.30154 * 1 2 3 32 32 H 1.08998 * 109.47047 * 60.30706 * 1 2 3 33 33 H 1.07996 * 128.01357 * 359.95721 * 3 2 1 34 34 H 1.09004 * 109.46724 * 239.70661 * 5 4 3 35 35 H 1.08992 * 109.47111 * 119.70717 * 5 4 3 36 36 H 1.09003 * 109.46467 * 60.00631 * 7 6 5 37 37 H 1.08993 * 109.47113 * 300.00896 * 7 6 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.46823 * 300.00095 * 13 11 10 40 40 H 1.08999 * 109.47091 * 59.99755 * 13 11 10 41 41 H 1.09002 * 109.46693 * 180.02562 * 14 13 11 42 42 H 1.08993 * 109.47585 * 60.00233 * 14 13 11 43 43 H 0.97007 * 120.00332 * 265.00292 * 17 15 14 44 44 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.47291 * 180.02562 * 26 15 14 46 46 H 1.08999 * 109.47531 * 59.99527 * 26 15 14 47 47 H 1.08999 * 109.46935 * 300.00059 * 27 11 10 48 48 H 1.09004 * 109.47138 * 59.99988 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 -0.0023 5 6 4.9211 1.3002 -0.0056 6 8 4.6498 2.7032 -0.0131 7 6 5.8213 3.5216 -0.0162 8 6 5.4194 4.9740 -0.0235 9 8 4.2454 5.2784 -0.0253 10 7 6.3646 5.9347 -0.0279 11 6 5.9739 7.3466 -0.0410 12 1 5.0651 7.4667 -0.6307 13 6 5.7182 7.8184 1.3918 14 6 5.3095 9.2927 1.3780 15 6 6.4326 10.1274 0.7591 16 1 7.3415 10.0077 1.3487 17 7 6.0416 11.5392 0.7465 18 6 6.2511 12.3176 1.8534 19 1 6.7051 11.8910 2.7356 20 6 5.8811 13.6555 1.8412 21 7 5.3283 14.1757 0.7660 22 14 6.1677 14.7176 3.3510 23 1 7.6187 14.7495 3.6655 24 1 5.6881 16.0974 3.0838 25 1 5.4237 14.1500 4.5040 26 6 6.6883 9.6557 -0.6737 27 6 7.0973 8.1809 -0.6598 28 7 3.4765 -0.7562 0.0049 29 8 2.3096 -1.0735 0.0062 30 1 -0.3633 -1.0277 0.0055 31 1 -0.3634 0.5185 0.8872 32 1 -0.3633 0.5090 -0.8927 33 1 2.0345 2.1271 -0.0006 34 1 5.4949 1.0363 -0.8940 35 1 5.4940 1.0456 0.8859 36 1 6.4142 3.3039 -0.9046 37 1 6.4126 3.3130 0.8753 38 1 7.3036 5.6914 -0.0268 39 1 4.9179 7.2239 1.8326 40 1 6.6270 7.6983 1.9815 41 1 5.1278 9.6288 2.3989 42 1 4.4006 9.4123 0.7885 43 1 5.6341 11.9226 -0.0460 44 1 5.0701 15.1107 0.7574 45 1 7.4886 10.2500 -1.1145 46 1 5.7793 9.7754 -1.2633 47 1 8.0061 8.0609 -0.0701 48 1 7.2795 7.8449 -1.6806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269997553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:46 Heat of formation + Delta-G solvation = -44.352251 kcal Electronic energy + Delta-G solvation = -28105.919032 eV Core-core repulsion = 23970.230561 eV Total energy + Delta-G solvation = -4135.688471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.97482 -41.11592 -39.55496 -38.61189 -36.34297 -35.27860 -34.65287 -34.28622 -32.54758 -31.67817 -30.28036 -28.79726 -28.58360 -27.28145 -25.45019 -23.97134 -23.63820 -22.57214 -21.65853 -21.26599 -20.80981 -19.13241 -18.77824 -18.51436 -18.03578 -17.75761 -17.33246 -16.95241 -16.59371 -16.09547 -15.81034 -15.61214 -15.35739 -15.13439 -14.99959 -14.67223 -14.52148 -14.19984 -14.01381 -13.96268 -13.61552 -13.39409 -13.25348 -13.15233 -13.07380 -12.88342 -12.78999 -12.42346 -12.30026 -12.18316 -12.16458 -12.02529 -11.64829 -11.45515 -11.41417 -11.19510 -10.87774 -10.76789 -10.66543 -10.28260 -10.02909 -8.98550 -7.92612 -5.20704 0.43195 1.16003 1.46915 1.49949 1.55866 1.60915 1.65186 2.15701 2.56628 2.62455 3.39308 3.40035 3.63139 3.71868 3.80306 3.88006 3.92001 4.06153 4.16701 4.22707 4.28079 4.30423 4.37501 4.39359 4.41180 4.41685 4.46965 4.54862 4.60987 4.66643 4.70808 4.87138 4.87770 4.97298 5.01724 5.13029 5.15198 5.22354 5.26698 5.28941 5.47932 5.54138 5.56119 5.65064 5.90293 6.29973 6.61834 7.18484 7.30144 7.35375 8.13599 8.35584 9.30814 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.001635 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.950563 B =17124.899749 C =17772.920825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.235 4.235 4 C 0.007 3.993 5 C 0.144 3.856 6 O -0.387 6.387 7 C 0.048 3.952 8 C 0.507 3.493 9 O -0.576 6.576 10 N -0.705 5.705 11 C 0.154 3.846 12 H 0.061 0.939 13 C -0.112 4.112 14 C -0.124 4.124 15 C 0.172 3.828 16 H 0.049 0.951 17 N -0.740 5.740 18 C -0.238 4.238 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.281 1.281 26 C -0.114 4.114 27 C -0.104 4.104 28 N -0.385 5.385 29 O 0.089 5.911 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.421 0.579 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.091 0.909 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -32.424 -3.847 32.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.256 4.256 4 C -0.151 4.151 5 C 0.068 3.932 6 O -0.306 6.306 7 C -0.030 4.030 8 C 0.294 3.706 9 O -0.455 6.455 10 N -0.359 5.359 11 C 0.049 3.951 12 H 0.079 0.921 13 C -0.151 4.151 14 C -0.165 4.165 15 C 0.064 3.936 16 H 0.067 0.933 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.800 3.200 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.207 1.207 26 C -0.153 4.153 27 C -0.142 4.142 28 N -0.093 5.093 29 O 0.024 5.976 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.189 0.811 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.259 0.741 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.953 -33.112 -3.673 33.329 hybrid contribution -0.233 1.942 0.555 2.034 sum 0.720 -31.170 -3.118 31.334 Atomic orbital electron populations 1.20587 0.80913 1.06113 1.05538 1.25216 0.97922 0.84947 1.00601 1.22534 0.91240 1.01736 1.10118 1.23579 0.98351 0.90233 1.02973 1.20473 0.89674 0.79268 1.03829 1.87925 1.30933 1.15775 1.95946 1.22405 0.88131 0.86292 1.06221 1.20899 0.85663 0.88616 0.75464 1.90743 1.20350 1.84182 1.50212 1.45763 1.10363 1.05005 1.74766 1.20815 0.98572 0.79767 0.95929 0.92095 1.21760 1.01478 0.94750 0.97125 1.22037 0.99517 0.94794 1.00127 1.20505 0.94813 0.82778 0.95514 0.93259 1.42674 1.73679 1.06462 1.15051 1.19601 1.31871 0.91711 0.93791 0.90669 1.25551 1.02568 0.98627 1.00326 1.69814 1.49382 1.13237 1.29753 0.85247 0.77994 0.77565 0.79184 1.20138 1.22328 1.20749 1.21659 1.01325 0.96256 0.96087 1.21659 0.97636 0.92561 1.02377 1.73748 0.98062 1.15629 1.21869 1.84768 1.11067 1.33806 1.67921 0.88216 0.87794 0.87718 0.81130 0.88646 0.88801 0.86275 0.86548 0.74117 0.93637 0.90251 0.94208 0.94504 0.79770 0.94167 0.91384 0.93074 0.89049 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 71.24 0.74 0.24 16 2 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 3 C -0.23 -4.63 10.45 22.40 0.23 -4.40 16 4 C 0.01 0.13 7.28 43.58 0.32 0.45 16 5 C 0.14 2.08 6.56 71.24 0.47 2.55 16 6 O -0.39 -7.37 9.37 -129.94 -1.22 -8.59 16 7 C 0.05 0.58 6.42 71.24 0.46 1.03 16 8 C 0.51 10.71 7.87 87.66 0.69 11.40 16 9 O -0.58 -19.24 16.16 16.00 0.26 -18.98 16 10 N -0.71 -11.51 5.08 -442.54 -2.25 -13.76 16 11 C 0.15 3.61 2.45 44.99 0.11 3.72 16 12 H 0.06 1.82 7.57 -2.39 -0.02 1.80 16 13 C -0.11 -3.12 5.50 30.59 0.17 -2.96 16 14 C -0.12 -4.54 5.50 30.59 0.17 -4.38 16 15 C 0.17 6.57 2.77 44.99 0.12 6.70 16 16 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 17 N -0.74 -37.43 5.12 -322.93 -1.65 -39.08 16 18 C -0.24 -13.26 9.93 84.03 0.83 -12.42 16 19 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 21 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 22 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 C -0.11 -3.44 5.39 30.61 0.17 -3.28 16 27 C -0.10 -2.10 5.39 30.61 0.17 -1.93 16 28 N -0.38 -8.34 12.07 -49.55 -0.60 -8.94 16 29 O 0.09 1.73 11.20 71.64 0.80 2.54 16 30 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.17 3.54 8.05 -2.91 -0.02 3.51 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.42 3.16 8.60 -92.71 -0.80 2.37 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.37 20.31 7.80 -92.70 -0.72 19.59 16 44 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -81.39 400.26 2.41 -78.98 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: -0.55 Total: 26.72 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.30 Total: -7.56 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -4.22 Total: -121.64 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.16 Total: -25.04 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -81.39 2.41 -78.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269997553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.626 kcal (2) G-P(sol) polarization free energy of solvation -81.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds