Wall clock time and date at job start Tue Mar 31 2020 21:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34329 * 126.44206 * 2 1 4 4 N 1.34482 * 107.66766 * 180.02562 * 3 2 1 5 5 C 1.30260 * 108.70042 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.61898 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.46729 * 90.02509 * 6 5 4 8 8 C 1.42898 * 113.99866 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47051 * 179.97438 * 8 7 6 10 10 O 1.21275 * 120.00406 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99792 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99791 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47347 * 324.99578 * 12 11 9 14 14 C 1.52995 * 109.47455 * 84.99663 * 12 11 9 15 15 C 1.53009 * 109.47383 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.46559 * 299.99834 * 15 14 12 17 17 H 1.08999 * 109.47409 * 299.99620 * 16 15 14 18 18 N 1.46504 * 109.47009 * 179.97438 * 16 15 14 19 19 C 1.36943 * 119.99781 * 85.00152 * 18 16 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 16 22 22 N 1.31622 * 119.99400 * 179.72313 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 359.72086 * 21 19 18 24 24 H 1.48506 * 109.46719 * 90.00417 * 23 21 19 25 25 H 1.48501 * 109.46793 * 210.00071 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00315 * 23 21 19 27 27 C 1.53005 * 109.47474 * 60.00211 * 16 15 14 28 28 C 1.53000 * 109.46730 * 299.99767 * 27 16 15 29 29 O 1.33973 * 108.75963 * 0.23129 * 5 4 3 30 30 H 1.09001 * 109.47544 * 89.99409 * 1 2 3 31 31 H 1.09000 * 109.47019 * 210.00010 * 1 2 3 32 32 H 1.09004 * 109.46958 * 329.99444 * 1 2 3 33 33 H 1.08002 * 126.16771 * 0.05988 * 3 2 1 34 34 H 1.08995 * 109.47351 * 330.03116 * 6 5 4 35 35 H 1.08996 * 109.47059 * 210.02395 * 6 5 4 36 36 H 1.09007 * 109.46959 * 60.00219 * 8 7 6 37 37 H 1.08994 * 109.47860 * 300.00476 * 8 7 6 38 38 H 0.97001 * 120.00103 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47574 * 299.99944 * 14 12 11 40 40 H 1.08999 * 109.47294 * 60.00029 * 14 12 11 41 41 H 1.09001 * 109.47121 * 180.02562 * 15 14 12 42 42 H 1.08999 * 109.46950 * 59.99735 * 15 14 12 43 43 H 0.97000 * 120.00410 * 265.00478 * 18 16 15 44 44 H 0.97009 * 119.99492 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.46904 * 59.99714 * 27 16 15 46 46 H 1.08993 * 109.47142 * 179.97438 * 27 16 15 47 47 H 1.08995 * 109.47176 * 179.97438 * 28 27 16 48 48 H 1.08999 * 109.46883 * 299.99814 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 -0.0006 5 6 3.5766 -0.6548 -0.0004 6 6 4.8005 -1.5340 -0.0014 7 8 5.1882 -1.8122 1.3456 8 6 6.3448 -2.6438 1.4575 9 6 6.6618 -2.8702 2.9133 10 8 5.9655 -2.3692 3.7706 11 7 7.7192 -3.6295 3.2626 12 6 8.0269 -3.8500 4.6778 13 1 7.7867 -2.9515 5.2462 14 6 7.1971 -5.0230 5.2035 15 6 7.5181 -5.2529 6.6818 16 6 9.0065 -5.5712 6.8368 17 1 9.2470 -6.4699 6.2688 18 7 9.3141 -5.7908 8.2522 19 6 9.1260 -7.0273 8.8100 20 1 8.7506 -7.8404 8.2064 21 6 9.4120 -7.2338 10.1525 22 7 9.2260 -8.4209 10.6898 23 14 10.0607 -5.8271 11.1965 24 1 8.9205 -5.0976 11.8075 25 1 10.9338 -6.3684 12.2688 26 1 10.8431 -4.8973 10.3432 27 6 9.8365 -4.3982 6.3111 28 6 9.5154 -4.1683 4.8330 29 8 2.3074 -1.0840 -0.0048 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9822 2.1113 0.0009 34 1 5.6145 -1.0231 -0.5156 35 1 4.5759 -2.4687 -0.5152 36 1 7.1911 -2.1562 0.9734 37 1 6.1521 -3.6014 0.9741 38 1 8.2759 -4.0306 2.5770 39 1 6.1367 -4.7962 5.0934 40 1 7.4373 -5.9216 4.6352 41 1 6.9272 -6.0889 7.0561 42 1 7.2776 -4.3543 7.2498 43 1 9.6509 -5.0604 8.7944 44 1 9.4262 -8.5653 11.6280 45 1 9.5960 -3.4996 6.8793 46 1 10.8968 -4.6248 6.4220 47 1 10.1062 -3.3324 4.4586 48 1 9.7559 -5.0670 4.2650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270003734.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:43 Heat of formation + Delta-G solvation = -50.897889 kcal Electronic energy + Delta-G solvation = -28088.835975 eV Core-core repulsion = 23952.863664 eV Total energy + Delta-G solvation = -4135.972311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.73948 -40.19782 -38.59302 -37.63228 -35.14453 -34.98001 -33.23769 -33.08434 -31.13566 -30.49236 -30.14310 -28.50143 -26.90222 -25.53360 -23.30886 -22.74476 -22.48250 -21.53970 -21.14984 -20.58479 -19.66786 -18.04837 -17.73345 -17.48155 -17.01228 -16.76534 -16.65544 -15.83662 -15.35586 -15.10916 -14.92159 -14.54678 -14.36881 -13.97769 -13.84214 -13.60543 -13.56401 -13.51432 -12.94851 -12.88583 -12.75409 -12.57662 -12.42937 -12.15231 -11.97889 -11.73908 -11.71948 -11.17439 -10.95246 -10.89034 -10.86222 -10.65796 -10.36284 -10.22956 -10.18620 -9.87376 -9.81815 -9.55680 -9.16159 -9.05482 -8.86492 -7.23963 -5.74914 -3.10035 0.87934 1.96733 2.23946 2.45434 2.70520 3.39697 3.41417 3.43172 3.47600 3.91053 4.24797 4.39087 4.50168 4.55091 4.61489 4.62340 4.66266 4.73804 4.83519 4.88189 4.94370 4.96293 5.08659 5.11528 5.40633 5.47101 5.52047 5.54851 5.60889 5.61806 5.76202 5.79142 5.84927 5.92159 6.10085 6.17242 6.18613 6.33173 6.36221 6.46452 6.54181 6.64898 6.90543 7.06145 7.29247 7.34761 8.01939 8.08719 8.44486 9.23399 9.96218 10.16173 11.43499 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.001663 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.682578 B =16830.794911 C =17338.039311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.037 4.037 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.186 3.814 6 C 0.162 3.838 7 O -0.356 6.356 8 C 0.045 3.955 9 C 0.512 3.488 10 O -0.514 6.514 11 N -0.724 5.724 12 C 0.146 3.854 13 H 0.088 0.912 14 C -0.124 4.124 15 C -0.133 4.133 16 C 0.182 3.818 17 H 0.055 0.945 18 N -0.750 5.750 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.124 4.124 28 C -0.118 4.118 29 O -0.194 6.194 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.398 0.602 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 16.056 -29.343 35.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.021 4.021 6 C 0.084 3.916 7 O -0.273 6.273 8 C -0.035 4.035 9 C 0.296 3.704 10 O -0.388 6.388 11 N -0.377 5.377 12 C 0.043 3.957 13 H 0.106 0.894 14 C -0.164 4.164 15 C -0.174 4.174 16 C 0.072 3.928 17 H 0.073 0.927 18 N -0.392 5.392 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.163 4.163 28 C -0.156 4.156 29 O -0.080 6.080 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.232 0.768 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.437 16.542 -28.487 34.556 hybrid contribution 0.151 0.294 0.360 0.489 sum -10.286 16.836 -28.127 34.357 Atomic orbital electron populations 1.20329 0.83663 1.04800 1.03916 1.23604 0.95234 0.84487 1.05739 1.23136 0.87548 1.00567 1.07198 1.70410 1.23370 1.09032 1.16035 1.25480 0.83909 0.89933 1.02740 1.20472 0.89115 0.96471 0.85511 1.88092 1.45580 1.69703 1.23973 1.22284 0.89514 0.96027 0.95642 1.20092 0.81110 0.79050 0.90165 1.90776 1.48352 1.48188 1.51520 1.46014 1.30226 1.52163 1.09252 1.21132 0.95056 0.99612 0.79924 0.89411 1.21900 0.99532 0.97152 0.97787 1.22191 0.99985 1.01930 0.93255 1.20219 0.91354 0.95204 0.85987 0.92697 1.42793 1.79534 1.10532 1.06296 1.19083 1.36839 0.87524 0.93720 0.89236 1.24673 1.01566 0.96310 0.96684 1.69709 1.54802 1.20971 1.12806 0.86547 0.78859 0.82546 0.80570 1.21120 1.21819 1.20323 1.21795 1.00881 0.99745 0.93893 1.21732 0.94017 1.01635 0.98254 1.84391 1.17680 1.36631 1.69335 0.89602 0.90031 0.88680 0.79652 0.88377 0.89827 0.89610 0.89628 0.76775 0.92187 0.92041 0.91261 0.92572 0.80695 0.93123 0.92075 0.91237 0.91739 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.01 0.38 0.09 16 2 C -0.04 -0.32 7.39 -35.69 -0.26 -0.58 16 3 C -0.05 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.46 -5.37 11.29 -11.10 -0.13 -5.49 16 5 C 0.19 1.99 7.97 -12.95 -0.10 1.89 16 6 C 0.16 1.22 6.56 36.01 0.24 1.45 16 7 O -0.36 -3.91 9.86 -55.14 -0.54 -4.46 16 8 C 0.05 0.34 6.42 36.01 0.23 0.57 16 9 C 0.51 6.01 7.87 -10.98 -0.09 5.92 16 10 O -0.51 -8.93 16.16 -14.35 -0.23 -9.16 16 11 N -0.72 -6.91 5.08 -53.81 -0.27 -7.18 16 12 C 0.15 1.81 2.45 -67.93 -0.17 1.64 16 13 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 14 C -0.12 -1.78 5.49 -26.73 -0.15 -1.92 16 15 C -0.13 -2.34 5.50 -26.73 -0.15 -2.48 16 16 C 0.18 3.37 2.77 -67.93 -0.19 3.18 16 17 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 18 N -0.75 -17.59 4.92 -53.42 -0.26 -17.85 16 19 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 22 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 23 Si 0.88 22.31 27.73 -169.99 -4.71 17.59 16 24 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 27 C -0.12 -1.83 5.39 -26.73 -0.14 -1.97 16 28 C -0.12 -1.31 5.39 -26.73 -0.14 -1.46 16 29 O -0.19 -2.06 10.78 5.35 0.06 -2.01 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.19 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 2.32 8.60 -40.82 -0.35 1.97 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.36 8.37 5.66 -40.82 -0.23 8.14 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -39.01 398.37 -8.08 -47.08 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.75 Total: 5.42 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.01 Total: -1.25 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.11 Total: -59.23 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.72 Total: -15.62 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.01 -8.08 -47.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270003734.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.813 kcal (2) G-P(sol) polarization free energy of solvation -39.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds