Wall clock time and date at job start Tue Mar 31 2020 21:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34329 * 126.44206 * 2 1 4 4 N 1.34482 * 107.66766 * 180.02562 * 3 2 1 5 5 C 1.30260 * 108.70042 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.61898 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.46729 * 90.02509 * 6 5 4 8 8 C 1.42898 * 113.99866 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47051 * 179.97438 * 8 7 6 10 10 O 1.21275 * 120.00406 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99792 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99791 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47347 * 324.99578 * 12 11 9 14 14 C 1.52995 * 109.47455 * 84.99663 * 12 11 9 15 15 C 1.53009 * 109.47383 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.46559 * 299.99834 * 15 14 12 17 17 H 1.08999 * 109.47409 * 299.99620 * 16 15 14 18 18 N 1.46504 * 109.47009 * 179.97438 * 16 15 14 19 19 C 1.36943 * 119.99781 * 85.00152 * 18 16 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 16 22 22 N 1.31622 * 119.99400 * 179.72313 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 359.72086 * 21 19 18 24 24 H 1.48506 * 109.46719 * 90.00417 * 23 21 19 25 25 H 1.48501 * 109.46793 * 210.00071 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00315 * 23 21 19 27 27 C 1.53005 * 109.47474 * 60.00211 * 16 15 14 28 28 C 1.53000 * 109.46730 * 299.99767 * 27 16 15 29 29 O 1.33973 * 108.75963 * 0.23129 * 5 4 3 30 30 H 1.09001 * 109.47544 * 89.99409 * 1 2 3 31 31 H 1.09000 * 109.47019 * 210.00010 * 1 2 3 32 32 H 1.09004 * 109.46958 * 329.99444 * 1 2 3 33 33 H 1.08002 * 126.16771 * 0.05988 * 3 2 1 34 34 H 1.08995 * 109.47351 * 330.03116 * 6 5 4 35 35 H 1.08996 * 109.47059 * 210.02395 * 6 5 4 36 36 H 1.09007 * 109.46959 * 60.00219 * 8 7 6 37 37 H 1.08994 * 109.47860 * 300.00476 * 8 7 6 38 38 H 0.97001 * 120.00103 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47574 * 299.99944 * 14 12 11 40 40 H 1.08999 * 109.47294 * 60.00029 * 14 12 11 41 41 H 1.09001 * 109.47121 * 180.02562 * 15 14 12 42 42 H 1.08999 * 109.46950 * 59.99735 * 15 14 12 43 43 H 0.97000 * 120.00410 * 265.00478 * 18 16 15 44 44 H 0.97009 * 119.99492 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.46904 * 59.99714 * 27 16 15 46 46 H 1.08993 * 109.47142 * 179.97438 * 27 16 15 47 47 H 1.08995 * 109.47176 * 179.97438 * 28 27 16 48 48 H 1.08999 * 109.46883 * 299.99814 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 -0.0006 5 6 3.5766 -0.6548 -0.0004 6 6 4.8005 -1.5340 -0.0014 7 8 5.1882 -1.8122 1.3456 8 6 6.3448 -2.6438 1.4575 9 6 6.6618 -2.8702 2.9133 10 8 5.9655 -2.3692 3.7706 11 7 7.7192 -3.6295 3.2626 12 6 8.0269 -3.8500 4.6778 13 1 7.7867 -2.9515 5.2462 14 6 7.1971 -5.0230 5.2035 15 6 7.5181 -5.2529 6.6818 16 6 9.0065 -5.5712 6.8368 17 1 9.2470 -6.4699 6.2688 18 7 9.3141 -5.7908 8.2522 19 6 9.1260 -7.0273 8.8100 20 1 8.7506 -7.8404 8.2064 21 6 9.4120 -7.2338 10.1525 22 7 9.2260 -8.4209 10.6898 23 14 10.0607 -5.8271 11.1965 24 1 8.9205 -5.0976 11.8075 25 1 10.9338 -6.3684 12.2688 26 1 10.8431 -4.8973 10.3432 27 6 9.8365 -4.3982 6.3111 28 6 9.5154 -4.1683 4.8330 29 8 2.3074 -1.0840 -0.0048 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9822 2.1113 0.0009 34 1 5.6145 -1.0231 -0.5156 35 1 4.5759 -2.4687 -0.5152 36 1 7.1911 -2.1562 0.9734 37 1 6.1521 -3.6014 0.9741 38 1 8.2759 -4.0306 2.5770 39 1 6.1367 -4.7962 5.0934 40 1 7.4373 -5.9216 4.6352 41 1 6.9272 -6.0889 7.0561 42 1 7.2776 -4.3543 7.2498 43 1 9.6509 -5.0604 8.7944 44 1 9.4262 -8.5653 11.6280 45 1 9.5960 -3.4996 6.8793 46 1 10.8968 -4.6248 6.4220 47 1 10.1062 -3.3324 4.4586 48 1 9.7559 -5.0670 4.2650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270003734.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:42 Heat of formation + Delta-G solvation = -82.272677 kcal Electronic energy + Delta-G solvation = -28090.196488 eV Core-core repulsion = 23952.863664 eV Total energy + Delta-G solvation = -4137.332824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.40983 -41.13548 -39.58813 -38.57838 -36.44680 -35.85727 -34.67521 -33.73570 -32.94520 -31.69886 -30.85116 -29.58238 -27.87691 -26.11316 -25.12487 -23.69541 -23.40284 -22.50735 -22.18606 -21.54496 -21.06841 -19.58640 -18.67475 -18.37117 -17.78401 -17.54731 -17.26263 -16.88983 -16.58120 -16.29324 -15.83746 -15.79349 -15.28533 -15.11521 -14.97859 -14.74848 -14.55990 -14.35866 -14.18024 -13.90232 -13.65313 -13.40299 -13.31231 -13.18246 -13.10907 -13.00507 -12.90530 -12.46702 -12.45979 -12.26748 -12.05622 -11.94849 -11.79085 -11.66873 -11.48610 -11.22392 -10.93064 -10.88869 -10.80813 -10.04282 -9.78154 -9.29417 -8.01636 -5.34185 0.22527 1.35185 1.37505 1.40914 1.47967 1.60240 1.62236 1.96534 2.48982 2.82111 3.29686 3.30409 3.57811 3.72590 3.76062 3.81762 3.86497 3.99707 4.08710 4.19453 4.24395 4.25727 4.32637 4.34529 4.36756 4.48313 4.52910 4.58852 4.61528 4.62779 4.64952 4.86279 4.94989 4.97499 5.11793 5.12799 5.14595 5.24185 5.24552 5.26619 5.47614 5.51510 5.60286 5.79246 5.85359 6.23256 6.61054 6.61708 7.09532 7.30236 7.87080 8.05255 9.19980 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.001663 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.682578 B =16830.794911 C =17338.039311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.041 4.041 3 C -0.067 4.067 4 N -0.490 5.490 5 C 0.165 3.835 6 C 0.161 3.839 7 O -0.400 6.400 8 C 0.049 3.951 9 C 0.505 3.495 10 O -0.582 6.582 11 N -0.704 5.704 12 C 0.152 3.848 13 H 0.063 0.937 14 C -0.114 4.114 15 C -0.126 4.126 16 C 0.175 3.825 17 H 0.050 0.950 18 N -0.754 5.754 19 C -0.226 4.226 20 H 0.057 0.943 21 C -0.067 4.067 22 N -0.985 5.985 23 Si 0.953 3.047 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.248 1.248 27 C -0.118 4.118 28 C -0.105 4.105 29 O -0.211 6.211 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.210 0.790 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.422 0.578 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.044 0.956 43 H 0.364 0.636 44 H 0.256 0.744 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 17.741 -32.226 37.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.205 4.205 4 N -0.222 5.222 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.319 6.319 8 C -0.030 4.030 9 C 0.291 3.709 10 O -0.460 6.460 11 N -0.358 5.358 12 C 0.048 3.952 13 H 0.081 0.919 14 C -0.153 4.153 15 C -0.167 4.167 16 C 0.067 3.933 17 H 0.068 0.932 18 N -0.396 5.396 19 C -0.357 4.357 20 H 0.075 0.925 21 C -0.258 4.258 22 N -0.636 5.636 23 Si 0.781 3.219 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.173 1.173 27 C -0.157 4.157 28 C -0.143 4.143 29 O -0.098 6.098 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.226 0.774 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.197 0.803 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.293 18.243 -31.471 37.545 hybrid contribution -0.303 -0.270 1.177 1.245 sum -9.596 17.973 -30.294 36.508 Atomic orbital electron populations 1.20554 0.80762 1.05758 1.05451 1.24420 0.96843 0.83858 1.04252 1.23627 0.87100 1.02025 1.07790 1.70383 1.24804 1.09944 1.17041 1.26247 0.84794 0.90300 1.02760 1.20814 0.88608 0.97727 0.84416 1.88018 1.47050 1.70696 1.26146 1.22468 0.90030 0.98009 0.92481 1.20998 0.80284 0.77833 0.91739 1.90753 1.50643 1.50913 1.53735 1.45750 1.30009 1.51467 1.08554 1.20845 0.95633 0.97376 0.81393 0.91914 1.21769 0.99077 0.98944 0.95503 1.22026 0.98976 0.99984 0.95695 1.20488 0.92333 0.96988 0.83450 0.93205 1.42855 1.79530 1.08858 1.08396 1.19054 1.34754 0.88457 0.93480 0.92514 1.25492 1.02992 0.99061 0.98233 1.69890 1.57105 1.23567 1.13041 0.85425 0.78263 0.79528 0.78675 1.21139 1.22239 1.17284 1.21709 1.00238 0.97454 0.96270 1.21652 0.92945 1.03854 0.95847 1.84395 1.18157 1.37632 1.69579 0.87632 0.90003 0.86709 0.77368 0.86065 0.86767 0.85664 0.85829 0.73978 0.93814 0.90424 0.94545 0.93671 0.80315 0.93484 0.92218 0.90589 0.88796 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 71.24 0.74 0.28 16 2 C -0.04 -0.67 7.39 24.79 0.18 -0.49 16 3 C -0.07 -1.21 11.80 83.39 0.98 -0.23 16 4 N -0.49 -11.48 11.29 -303.81 -3.43 -14.91 16 5 C 0.17 3.48 7.97 88.34 0.70 4.18 16 6 C 0.16 2.10 6.56 71.24 0.47 2.57 16 7 O -0.40 -8.19 9.86 -129.94 -1.28 -9.47 16 8 C 0.05 0.57 6.42 71.24 0.46 1.02 16 9 C 0.50 10.92 7.87 87.66 0.69 11.61 16 10 O -0.58 -20.41 16.16 16.02 0.26 -20.15 16 11 N -0.70 -11.27 5.08 -442.54 -2.25 -13.52 16 12 C 0.15 3.46 2.45 44.99 0.11 3.57 16 13 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 14 C -0.11 -3.18 5.49 30.60 0.17 -3.01 16 15 C -0.13 -4.53 5.50 30.60 0.17 -4.36 16 16 C 0.18 6.39 2.77 44.99 0.12 6.51 16 17 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 18 N -0.75 -35.22 4.92 -322.93 -1.59 -36.81 16 19 C -0.23 -13.01 10.41 84.03 0.87 -12.13 16 20 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 21 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 22 N -0.99 -64.04 13.97 21.65 0.30 -63.74 16 23 Si 0.95 46.36 27.73 68.60 1.90 48.26 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 26 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 27 C -0.12 -3.17 5.39 30.60 0.16 -3.01 16 28 C -0.10 -1.93 5.39 30.59 0.16 -1.77 16 29 O -0.21 -4.45 10.78 -3.76 -0.04 -4.49 16 30 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.21 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.42 2.89 8.60 -92.71 -0.80 2.09 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.36 16.40 5.66 -92.71 -0.52 15.88 16 44 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -91.65 398.37 -0.06 -91.72 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.41 Total: 21.88 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 6.47 Total: 1.24 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -6.97 Total: -128.98 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.06 Total: -34.12 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.26 kcal Total: -91.65 -0.06 -91.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270003734.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.443 kcal (2) G-P(sol) polarization free energy of solvation -91.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds