Wall clock time and date at job start Tue Mar 31 2020 19:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34338 * 126.44192 * 2 1 4 4 N 1.34476 * 107.66529 * 179.72239 * 3 2 1 5 5 C 1.30249 * 108.70566 * 0.41858 * 4 3 2 6 6 C 1.50695 * 125.62263 * 179.83630 * 5 4 3 7 7 O 1.42894 * 109.47030 * 89.69742 * 6 5 4 8 8 C 1.42902 * 114.00162 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47160 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00445 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00042 * 180.02562 * 9 8 7 12 12 C 1.46924 * 120.62986 * 354.65834 * 11 9 8 13 13 C 1.52766 * 109.01146 * 233.58837 * 12 11 9 14 14 C 1.53041 * 109.37977 * 305.58667 * 13 12 11 15 15 C 1.53042 * 109.53878 * 61.24030 * 14 13 12 16 16 C 1.46926 * 120.63403 * 174.94214 * 11 9 8 17 17 H 1.09003 * 109.58435 * 246.15801 * 16 11 9 18 18 C 1.53005 * 109.58286 * 6.43414 * 16 11 9 19 19 N 1.46503 * 109.46955 * 181.28429 * 18 16 11 20 20 C 1.36935 * 120.00011 * 185.47907 * 19 18 16 21 21 H 1.08002 * 120.00124 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00100 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99788 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46860 * 90.00267 * 24 22 20 26 26 H 1.48498 * 109.46858 * 210.00364 * 24 22 20 27 27 H 1.48497 * 109.47026 * 330.00402 * 24 22 20 28 28 O 1.33970 * 108.75916 * 359.58125 * 5 4 3 29 29 H 1.09000 * 109.46654 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47467 * 300.00572 * 1 2 3 31 31 H 1.09001 * 109.46807 * 60.00623 * 1 2 3 32 32 H 1.07999 * 126.16195 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47453 * 209.69754 * 6 5 4 34 34 H 1.09004 * 109.47074 * 329.69981 * 6 5 4 35 35 H 1.08999 * 109.47342 * 299.99935 * 8 7 6 36 36 H 1.09003 * 109.47277 * 60.00077 * 8 7 6 37 37 H 1.09002 * 109.58765 * 353.41539 * 12 11 9 38 38 H 1.08993 * 109.58993 * 113.84317 * 12 11 9 39 39 H 1.08989 * 109.56710 * 185.55343 * 13 12 11 40 40 H 1.08993 * 109.38756 * 65.50769 * 13 12 11 41 41 H 1.08998 * 109.46077 * 301.21909 * 14 13 12 42 42 H 1.08995 * 109.45218 * 181.25355 * 14 13 12 43 43 H 1.08993 * 109.50224 * 178.68555 * 15 14 13 44 44 H 1.09003 * 109.49969 * 58.58325 * 15 14 13 45 45 H 1.08995 * 109.47424 * 301.28331 * 18 16 11 46 46 H 1.09002 * 109.46852 * 61.28773 * 18 16 11 47 47 H 0.97002 * 119.99732 * 5.47516 * 19 18 16 48 48 H 0.96996 * 120.00295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5781 0.6479 0.0062 5 6 3.5766 -0.6546 0.0009 6 6 4.8005 -1.5338 0.0015 7 8 5.1869 -1.8114 1.3490 8 6 6.3441 -2.6420 1.4624 9 6 6.6596 -2.8678 2.9186 10 8 5.9618 -2.3672 3.7750 11 7 7.7172 -3.6262 3.2693 12 6 8.5020 -4.3341 2.2487 13 6 8.5811 -5.8139 2.6196 14 6 9.1286 -5.9524 4.0421 15 6 8.1837 -5.2563 5.0242 16 6 8.1034 -3.7657 4.6800 17 1 9.0762 -3.3007 4.8402 18 6 7.0581 -3.0868 5.5675 19 7 7.4613 -3.2007 6.9713 20 6 6.6230 -2.7638 7.9620 21 1 5.6648 -2.3348 7.7085 22 6 7.0048 -2.8722 9.2923 23 7 8.1727 -3.3945 9.6012 24 14 5.8615 -2.2755 10.6437 25 1 4.9724 -3.3872 11.0665 26 1 6.6652 -1.8154 11.8045 27 1 5.0382 -1.1496 10.1342 28 8 2.3075 -1.0839 0.0005 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.9821 2.1113 -0.0004 33 1 4.5765 -2.4687 -0.5121 34 1 5.6150 -1.0231 -0.5121 35 1 6.1527 -3.6000 0.9790 36 1 7.1905 -2.1539 0.9792 37 1 8.0189 -4.2278 1.2774 38 1 9.5079 -3.9165 2.2065 39 1 9.2423 -6.3298 1.9236 40 1 7.5850 -6.2534 2.5690 41 1 10.1147 -5.4912 4.0981 42 1 9.2066 -7.0085 4.2998 43 1 8.5620 -5.3753 6.0395 44 1 7.1910 -5.7005 4.9510 45 1 6.9797 -2.0341 5.2963 46 1 6.0920 -3.5713 5.4265 47 1 8.3220 -3.5857 7.1990 48 1 8.4396 -3.4700 10.5307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272980341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:53 Heat of formation + Delta-G solvation = -20.961552 kcal Electronic energy + Delta-G solvation = -29306.441609 eV Core-core repulsion = 25171.767435 eV Total energy + Delta-G solvation = -4134.674174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.58051 -40.43080 -38.30818 -36.96482 -34.98652 -34.70424 -33.07800 -32.82282 -32.02047 -29.99213 -29.66167 -27.82439 -25.90896 -25.35757 -24.34249 -23.01532 -22.58370 -21.37918 -21.11788 -20.88322 -19.05905 -17.74533 -17.35515 -16.99720 -16.77341 -16.46368 -16.34613 -15.51242 -15.06102 -15.00989 -14.56411 -14.49136 -14.21709 -14.11789 -13.75675 -13.49361 -13.42448 -13.26469 -13.16112 -12.93587 -12.71582 -12.69536 -12.29660 -12.17367 -11.88279 -11.60798 -11.54421 -10.98110 -10.91799 -10.80221 -10.78447 -10.65533 -10.51698 -10.32200 -10.13934 -9.92698 -9.60781 -9.02200 -8.81991 -8.70335 -8.31128 -6.71236 -5.62032 -2.87943 1.04021 2.13532 2.40863 2.75117 2.83821 3.52924 3.54418 3.58926 3.62663 3.98719 4.39924 4.49698 4.60765 4.65506 4.69838 4.75511 4.77320 4.82798 4.85130 4.97062 4.98930 5.01945 5.09189 5.22364 5.23274 5.36599 5.38172 5.55890 5.59817 5.72139 5.76267 5.79682 5.82747 5.98480 6.00971 6.01608 6.24444 6.25513 6.32339 6.55501 6.60097 6.81433 7.16141 7.33483 7.45668 7.54591 7.89668 8.38698 8.59705 9.68714 10.27584 10.62890 11.61665 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008840 B = 0.002887 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.616771 B = 9695.968237 C =12394.511728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.187 3.813 6 C 0.162 3.838 7 O -0.354 6.354 8 C 0.047 3.953 9 C 0.506 3.494 10 O -0.489 6.489 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.135 4.135 14 C -0.121 4.121 15 C -0.126 4.126 16 C 0.142 3.858 17 H 0.072 0.928 18 C 0.162 3.838 19 N -0.737 5.737 20 C -0.223 4.223 21 H 0.070 0.930 22 C -0.020 4.020 23 N -0.940 5.940 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.282 1.282 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.186 0.814 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.035 0.965 47 H 0.378 0.622 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 -1.071 -28.203 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.019 4.019 6 C 0.084 3.916 7 O -0.272 6.272 8 C -0.033 4.033 9 C 0.291 3.709 10 O -0.361 6.361 11 N -0.344 5.344 12 C -0.016 4.016 13 C -0.173 4.173 14 C -0.158 4.158 15 C -0.165 4.165 16 C 0.040 3.960 17 H 0.090 0.910 18 C 0.036 3.964 19 N -0.383 5.383 20 C -0.354 4.354 21 H 0.088 0.912 22 C -0.215 4.215 23 N -0.590 5.590 24 Si 0.737 3.263 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.208 1.208 28 O -0.081 6.081 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.212 0.788 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.329 -0.326 -27.495 28.008 hybrid contribution -0.695 -0.337 0.641 1.003 sum -6.024 -0.664 -26.854 27.529 Atomic orbital electron populations 1.20318 0.83743 1.04556 1.04045 1.23580 0.95195 0.84518 1.05924 1.23114 0.87585 1.00569 1.07165 1.70408 1.23324 1.09056 1.15983 1.25496 0.83874 0.89944 1.02619 1.20456 0.89067 0.96305 0.85757 1.88113 1.45604 1.69793 1.23643 1.22376 0.89181 0.95422 0.96344 1.20043 0.81172 0.79748 0.89926 1.90901 1.47482 1.47948 1.49753 1.48083 1.29934 1.48363 1.08003 1.21650 0.96438 0.92691 0.90795 1.21848 1.01987 0.95562 0.97919 1.21552 0.99236 1.00846 0.94211 1.21941 1.00027 0.94436 1.00078 1.21623 0.99616 0.96239 0.78557 0.91008 1.21302 0.93560 0.98152 0.83398 1.42565 1.20817 1.74964 0.99986 1.19254 0.98366 1.31631 0.86164 0.91203 1.24693 0.97320 1.02450 0.97023 1.69654 1.20628 1.51640 1.17059 0.86188 0.79811 0.78341 0.81961 1.21914 1.21918 1.20798 1.84391 1.17718 1.36630 1.69325 0.90225 0.88984 0.89210 0.79687 0.90023 0.88489 0.90111 0.89899 0.90349 0.91133 0.90923 0.91539 0.91825 0.91786 0.89468 0.91697 0.93806 0.94711 0.78833 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.43 36.00 0.38 -0.02 16 2 C -0.04 -0.40 7.39 -35.69 -0.26 -0.66 16 3 C -0.05 -0.50 11.80 -17.77 -0.21 -0.71 16 4 N -0.46 -6.27 11.29 -11.10 -0.13 -6.40 16 5 C 0.19 2.38 7.97 -12.95 -0.10 2.28 16 6 C 0.16 1.56 6.56 36.00 0.24 1.80 16 7 O -0.35 -4.87 9.86 -55.14 -0.54 -5.41 16 8 C 0.05 0.50 4.82 36.00 0.17 0.67 16 9 C 0.51 8.00 7.69 -10.98 -0.08 7.91 16 10 O -0.49 -10.52 11.90 -14.35 -0.17 -10.69 16 11 N -0.61 -8.53 2.98 -165.48 -0.49 -9.03 16 12 C 0.11 0.97 6.30 -3.93 -0.02 0.94 16 13 C -0.13 -1.20 6.07 -26.83 -0.16 -1.37 16 14 C -0.12 -1.38 5.89 -26.69 -0.16 -1.54 16 15 C -0.13 -2.02 5.15 -26.61 -0.14 -2.15 16 16 C 0.14 2.49 3.02 -67.60 -0.20 2.28 16 17 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 18 C 0.16 3.79 4.10 -4.04 -0.02 3.77 16 19 N -0.74 -20.10 5.29 -59.90 -0.32 -20.42 16 20 C -0.22 -6.75 9.99 -15.06 -0.15 -6.90 16 21 H 0.07 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 23 N -0.94 -29.51 13.06 55.49 0.72 -28.79 16 24 Si 0.91 23.85 29.55 -169.99 -5.02 18.83 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 27 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 28 O -0.19 -2.42 10.78 5.36 0.06 -2.37 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.19 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.59 7.47 -51.93 -0.39 0.20 16 36 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.08 0.47 5.96 -51.93 -0.31 0.16 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.48 8.14 -51.94 -0.42 0.05 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.59 7.28 -51.93 -0.38 1.21 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.04 1.14 6.34 -51.93 -0.33 0.81 16 46 H 0.03 0.89 7.12 -51.93 -0.37 0.52 16 47 H 0.38 10.44 6.88 -40.82 -0.28 10.16 16 48 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -39.80 389.78 -8.36 -48.16 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.52 Total: 4.64 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.82 Total: 5.60 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -0.21 Total: -64.63 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.66 Total: -18.47 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.02 Total: 18.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.80 -8.36 -48.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272980341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.200 kcal (2) G-P(sol) polarization free energy of solvation -39.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds