Wall clock time and date at job start Tue Mar 31 2020 19:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34338 * 126.44192 * 2 1 4 4 N 1.34476 * 107.66529 * 179.72239 * 3 2 1 5 5 C 1.30249 * 108.70566 * 0.41858 * 4 3 2 6 6 C 1.50695 * 125.62263 * 179.83630 * 5 4 3 7 7 O 1.42894 * 109.47030 * 89.69742 * 6 5 4 8 8 C 1.42902 * 114.00162 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47160 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00445 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00042 * 180.02562 * 9 8 7 12 12 C 1.46924 * 120.62986 * 354.65834 * 11 9 8 13 13 C 1.52766 * 109.01146 * 233.58837 * 12 11 9 14 14 C 1.53041 * 109.37977 * 305.58667 * 13 12 11 15 15 C 1.53042 * 109.53878 * 61.24030 * 14 13 12 16 16 C 1.46926 * 120.63403 * 174.94214 * 11 9 8 17 17 H 1.09003 * 109.58435 * 246.15801 * 16 11 9 18 18 C 1.53005 * 109.58286 * 6.43414 * 16 11 9 19 19 N 1.46503 * 109.46955 * 181.28429 * 18 16 11 20 20 C 1.36935 * 120.00011 * 185.47907 * 19 18 16 21 21 H 1.08002 * 120.00124 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00100 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99788 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46860 * 90.00267 * 24 22 20 26 26 H 1.48498 * 109.46858 * 210.00364 * 24 22 20 27 27 H 1.48497 * 109.47026 * 330.00402 * 24 22 20 28 28 O 1.33970 * 108.75916 * 359.58125 * 5 4 3 29 29 H 1.09000 * 109.46654 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47467 * 300.00572 * 1 2 3 31 31 H 1.09001 * 109.46807 * 60.00623 * 1 2 3 32 32 H 1.07999 * 126.16195 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47453 * 209.69754 * 6 5 4 34 34 H 1.09004 * 109.47074 * 329.69981 * 6 5 4 35 35 H 1.08999 * 109.47342 * 299.99935 * 8 7 6 36 36 H 1.09003 * 109.47277 * 60.00077 * 8 7 6 37 37 H 1.09002 * 109.58765 * 353.41539 * 12 11 9 38 38 H 1.08993 * 109.58993 * 113.84317 * 12 11 9 39 39 H 1.08989 * 109.56710 * 185.55343 * 13 12 11 40 40 H 1.08993 * 109.38756 * 65.50769 * 13 12 11 41 41 H 1.08998 * 109.46077 * 301.21909 * 14 13 12 42 42 H 1.08995 * 109.45218 * 181.25355 * 14 13 12 43 43 H 1.08993 * 109.50224 * 178.68555 * 15 14 13 44 44 H 1.09003 * 109.49969 * 58.58325 * 15 14 13 45 45 H 1.08995 * 109.47424 * 301.28331 * 18 16 11 46 46 H 1.09002 * 109.46852 * 61.28773 * 18 16 11 47 47 H 0.97002 * 119.99732 * 5.47516 * 19 18 16 48 48 H 0.96996 * 120.00295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5781 0.6479 0.0062 5 6 3.5766 -0.6546 0.0009 6 6 4.8005 -1.5338 0.0015 7 8 5.1869 -1.8114 1.3490 8 6 6.3441 -2.6420 1.4624 9 6 6.6596 -2.8678 2.9186 10 8 5.9618 -2.3672 3.7750 11 7 7.7172 -3.6262 3.2693 12 6 8.5020 -4.3341 2.2487 13 6 8.5811 -5.8139 2.6196 14 6 9.1286 -5.9524 4.0421 15 6 8.1837 -5.2563 5.0242 16 6 8.1034 -3.7657 4.6800 17 1 9.0762 -3.3007 4.8402 18 6 7.0581 -3.0868 5.5675 19 7 7.4613 -3.2007 6.9713 20 6 6.6230 -2.7638 7.9620 21 1 5.6648 -2.3348 7.7085 22 6 7.0048 -2.8722 9.2923 23 7 8.1727 -3.3945 9.6012 24 14 5.8615 -2.2755 10.6437 25 1 4.9724 -3.3872 11.0665 26 1 6.6652 -1.8154 11.8045 27 1 5.0382 -1.1496 10.1342 28 8 2.3075 -1.0839 0.0005 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.9821 2.1113 -0.0004 33 1 4.5765 -2.4687 -0.5121 34 1 5.6150 -1.0231 -0.5121 35 1 6.1527 -3.6000 0.9790 36 1 7.1905 -2.1539 0.9792 37 1 8.0189 -4.2278 1.2774 38 1 9.5079 -3.9165 2.2065 39 1 9.2423 -6.3298 1.9236 40 1 7.5850 -6.2534 2.5690 41 1 10.1147 -5.4912 4.0981 42 1 9.2066 -7.0085 4.2998 43 1 8.5620 -5.3753 6.0395 44 1 7.1910 -5.7005 4.9510 45 1 6.9797 -2.0341 5.2963 46 1 6.0920 -3.5713 5.4265 47 1 8.3220 -3.5857 7.1990 48 1 8.4396 -3.4700 10.5307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272980341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:52 Heat of formation + Delta-G solvation = -52.412272 kcal Electronic energy + Delta-G solvation = -29307.805414 eV Core-core repulsion = 25171.767435 eV Total energy + Delta-G solvation = -4136.037979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.40920 -41.62384 -39.23645 -38.11983 -36.63773 -35.85908 -34.15543 -33.75384 -33.66708 -31.57639 -30.59077 -28.74419 -27.48651 -26.15972 -25.49735 -24.86431 -23.40412 -22.66355 -22.19983 -21.91089 -20.25117 -19.20507 -18.56604 -18.19780 -17.81252 -17.37993 -17.33833 -16.65016 -16.56991 -16.10266 -15.85625 -15.50247 -15.44739 -15.19242 -15.00393 -14.85607 -14.45568 -14.40399 -14.14868 -14.02939 -13.89390 -13.51842 -13.31234 -13.19439 -13.09549 -12.95551 -12.84559 -12.69645 -12.46320 -12.20768 -12.07866 -12.01020 -11.81879 -11.66122 -11.56986 -11.38507 -11.02347 -10.87603 -10.18398 -9.77178 -9.59768 -8.97825 -7.99206 -5.27171 0.22278 1.33436 1.40976 1.43886 1.53335 1.60288 1.63229 1.82353 2.52590 2.76056 3.19387 3.32998 3.56706 3.76184 3.81449 3.86762 3.97183 3.99892 4.06659 4.12567 4.14534 4.16726 4.20213 4.29172 4.29644 4.43450 4.46734 4.60940 4.63943 4.65766 4.71829 4.83585 4.95900 4.97270 5.07669 5.13065 5.14169 5.19313 5.24531 5.28291 5.31112 5.42776 5.50060 5.63719 5.88343 6.24011 6.46546 6.61574 7.23212 7.29816 8.03817 8.32470 9.24259 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008840 B = 0.002887 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.616771 B = 9695.968237 C =12394.511728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.040 4.040 3 C -0.069 4.069 4 N -0.491 5.491 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.402 6.402 8 C 0.056 3.944 9 C 0.491 3.509 10 O -0.565 6.565 11 N -0.602 5.602 12 C 0.098 3.902 13 C -0.129 4.129 14 C -0.116 4.116 15 C -0.119 4.119 16 C 0.151 3.849 17 H 0.072 0.928 18 C 0.177 3.823 19 N -0.744 5.744 20 C -0.246 4.246 21 H 0.057 0.943 22 C -0.071 4.071 23 N -0.965 5.965 24 Si 0.974 3.026 25 H -0.283 1.283 26 H -0.285 1.285 27 H -0.278 1.278 28 O -0.210 6.210 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.209 0.791 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.015 0.985 46 H 0.006 0.994 47 H 0.374 0.626 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -2.032 -31.128 31.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.207 4.207 4 N -0.222 5.222 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.321 6.321 8 C -0.023 4.023 9 C 0.280 3.720 10 O -0.442 6.442 11 N -0.337 5.337 12 C -0.023 4.023 13 C -0.167 4.167 14 C -0.153 4.153 15 C -0.158 4.158 16 C 0.047 3.953 17 H 0.090 0.910 18 C 0.051 3.949 19 N -0.389 5.389 20 C -0.378 4.378 21 H 0.075 0.925 22 C -0.263 4.263 23 N -0.616 5.616 24 Si 0.802 3.198 25 H -0.210 1.210 26 H -0.211 1.211 27 H -0.204 1.204 28 O -0.097 6.097 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.226 0.774 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.024 0.976 47 H 0.207 0.793 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.927 -1.317 -30.491 30.914 hybrid contribution -0.849 -0.014 1.525 1.745 sum -5.776 -1.331 -28.966 29.566 Atomic orbital electron populations 1.20554 0.80656 1.05405 1.05835 1.24432 0.96879 0.83823 1.04184 1.23609 0.87123 1.02081 1.07913 1.70376 1.24862 1.10034 1.16978 1.26240 0.84797 0.90282 1.02766 1.20838 0.88634 0.97840 0.84297 1.88043 1.46912 1.70765 1.26352 1.22491 0.89881 0.97780 0.92125 1.21200 0.80265 0.78449 0.92091 1.90870 1.50123 1.50896 1.52351 1.48199 1.30039 1.48271 1.07233 1.22159 0.97184 0.92097 0.90828 1.21863 1.02497 0.95834 0.96524 1.21541 0.98303 1.00727 0.94740 1.21819 1.00252 0.93701 1.00029 1.21228 0.97207 0.96572 0.80300 0.90972 1.21091 0.94297 0.96878 0.82635 1.42697 1.20270 1.74628 1.01309 1.19474 0.98518 1.32223 0.87553 0.92481 1.25522 0.99061 1.02676 0.99055 1.69793 1.22018 1.52242 1.17558 0.85140 0.77913 0.77955 0.78763 1.20952 1.21101 1.20370 1.84396 1.18143 1.37621 1.69542 0.89818 0.87846 0.86542 0.77411 0.86441 0.86049 0.85619 0.85873 0.85978 0.89179 0.86905 0.92033 0.90846 0.90789 0.92719 0.93576 0.96693 0.97593 0.79337 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.43 71.24 0.74 0.07 16 2 C -0.04 -0.81 7.39 24.79 0.18 -0.62 16 3 C -0.07 -1.52 11.80 83.40 0.98 -0.54 16 4 N -0.49 -13.64 11.29 -303.83 -3.43 -17.07 16 5 C 0.17 4.17 7.97 88.34 0.70 4.87 16 6 C 0.16 2.78 6.56 71.23 0.47 3.25 16 7 O -0.40 -10.66 9.86 -129.94 -1.28 -11.94 16 8 C 0.06 1.02 4.82 71.23 0.34 1.36 16 9 C 0.49 15.50 7.69 87.66 0.67 16.17 16 10 O -0.56 -26.00 11.90 16.00 0.19 -25.81 16 11 N -0.60 -16.31 2.98 -795.83 -2.37 -18.68 16 12 C 0.10 1.33 6.30 86.22 0.54 1.87 16 13 C -0.13 -1.76 6.07 30.53 0.19 -1.57 16 14 C -0.12 -2.41 5.89 30.62 0.18 -2.23 16 15 C -0.12 -3.93 5.15 30.67 0.16 -3.77 16 16 C 0.15 5.48 3.02 44.98 0.14 5.61 16 17 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 18 C 0.18 8.91 4.10 86.38 0.35 9.26 16 19 N -0.74 -43.17 5.29 -343.43 -1.82 -44.99 16 20 C -0.25 -15.65 9.99 84.03 0.84 -14.81 16 21 H 0.06 3.70 7.83 -2.91 -0.02 3.67 16 22 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 23 N -0.97 -62.03 13.06 21.65 0.28 -61.75 16 24 Si 0.97 50.12 29.55 68.60 2.03 52.15 16 25 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 28 O -0.21 -5.23 10.78 -3.73 -0.04 -5.27 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.21 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.12 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.13 1.16 7.47 -2.39 -0.02 1.15 16 36 H 0.12 1.27 8.12 -2.39 -0.02 1.26 16 37 H 0.12 0.66 5.96 -2.39 -0.01 0.64 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 2.12 7.28 -2.39 -0.02 2.10 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.02 0.86 6.34 -2.39 -0.02 0.84 16 46 H 0.01 0.34 7.12 -2.39 -0.02 0.32 16 47 H 0.37 21.89 6.88 -92.71 -0.64 21.25 16 48 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -96.14 389.78 0.85 -95.29 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.33 Total: 23.09 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.96 Total: 14.99 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -7.34 Total: -142.49 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.13 Total: -43.02 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.03 Total: 52.15 kcal Total: -96.14 0.85 -95.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272980341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.874 kcal (2) G-P(sol) polarization free energy of solvation -96.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds