Wall clock time and date at job start Tue Mar 31 2020 21:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 N 1.46500 * 109.45782 * 300.73707 * 3 2 1 5 5 C 1.36940 * 120.00300 * 304.77875 * 4 3 2 6 6 H 1.08004 * 119.99599 * 354.92480 * 5 4 3 7 7 C 1.38809 * 120.00190 * 174.92419 * 5 4 3 8 8 N 1.31620 * 119.99987 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47248 * 89.99845 * 9 7 5 11 11 H 1.48498 * 109.47128 * 209.99738 * 9 7 5 12 12 H 1.48500 * 109.47111 * 329.99672 * 9 7 5 13 13 C 1.53045 * 109.45976 * 180.76754 * 3 2 1 14 14 C 1.53191 * 109.31082 * 178.59730 * 13 3 2 15 15 N 1.46921 * 108.76455 * 54.65815 * 14 13 3 16 16 C 1.34772 * 120.63249 * 126.40915 * 15 14 13 17 17 O 1.21501 * 120.00301 * 6.03573 * 16 15 14 18 18 C 1.48332 * 120.00068 * 186.04257 * 16 15 14 19 19 C 1.42271 * 126.93793 * 186.81730 * 18 16 15 20 20 C 1.35313 * 103.92323 * 180.02562 * 19 18 16 21 21 C 1.50704 * 126.66966 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.46717 * 90.00107 * 21 20 19 23 23 C 1.42903 * 113.99870 * 180.02562 * 22 21 20 24 24 O 1.34017 * 106.66697 * 0.02562 * 20 19 18 25 25 N 1.20902 * 111.84553 * 359.71213 * 24 20 19 26 26 C 1.46928 * 118.73722 * 306.37631 * 15 14 13 27 27 C 1.53036 * 109.46409 * 60.71045 * 3 2 1 28 28 H 1.09000 * 109.47052 * 64.73232 * 1 2 3 29 29 H 1.09003 * 109.47531 * 184.73041 * 1 2 3 30 30 H 1.09002 * 109.47094 * 304.73131 * 1 2 3 31 31 H 1.09001 * 109.47429 * 239.99223 * 2 1 3 32 32 H 1.09001 * 109.46733 * 119.99514 * 2 1 3 33 33 H 0.97001 * 119.99996 * 124.77530 * 4 3 2 34 34 H 0.96999 * 119.99853 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.49591 * 298.56618 * 13 3 2 36 36 H 1.09003 * 109.49615 * 58.66071 * 13 3 2 37 37 H 1.09001 * 109.59724 * 294.86570 * 14 13 3 38 38 H 1.09007 * 109.58430 * 174.43860 * 14 13 3 39 39 H 1.08000 * 128.04261 * 359.97438 * 19 18 16 40 40 H 1.09003 * 109.47222 * 210.00193 * 21 20 19 41 41 H 1.09005 * 109.46903 * 330.00598 * 21 20 19 42 42 H 1.09004 * 109.47022 * 60.00156 * 23 22 21 43 43 H 1.09000 * 109.47377 * 179.97438 * 23 22 21 44 44 H 1.09005 * 109.47149 * 300.00618 * 23 22 21 45 45 H 1.08993 * 109.59217 * 293.82394 * 26 15 14 46 46 H 1.09003 * 109.58178 * 173.39794 * 26 15 14 47 47 H 1.09002 * 109.49996 * 301.33986 * 27 3 2 48 48 H 1.09001 * 109.49256 * 61.43369 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5371 2.1379 -1.1873 5 6 1.7701 1.6209 -2.4338 6 1 2.3934 0.7463 -2.5477 7 6 1.2053 2.2210 -3.5508 8 7 1.4297 1.7243 -4.7488 9 14 0.1278 3.7341 -3.3537 10 1 0.9697 4.9549 -3.4313 11 1 -0.8874 3.7634 -4.4372 12 1 -0.5556 3.6870 -2.0362 13 6 3.5703 1.4422 -0.0193 14 6 4.0768 2.8875 -0.0547 15 7 3.4880 3.6223 1.0731 16 6 4.2721 4.2936 1.9397 17 8 5.4656 4.3873 1.7321 18 6 3.6781 4.9181 3.1469 19 6 4.3343 5.7670 4.0812 20 6 3.3711 6.0634 4.9842 21 6 3.5183 6.9375 6.2030 22 8 3.2122 8.2902 5.8586 23 6 3.3224 9.2068 6.9494 24 8 2.2610 5.4276 4.5848 25 7 2.4424 4.8028 3.5658 26 6 2.0280 3.6120 1.2379 27 6 1.5445 2.1586 1.2584 28 1 -0.3633 0.4387 -0.9293 29 1 -0.3634 -1.0242 0.0847 30 1 -0.3633 0.5855 0.8446 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.0389 2.9646 -1.0905 34 1 1.0353 2.1439 -5.5294 35 1 3.9453 0.9468 0.8762 36 1 3.9229 0.9116 -0.9038 37 1 3.7784 3.3566 -0.9922 38 1 5.1635 2.8961 0.0310 39 1 5.3625 6.0973 4.0723 40 1 2.8338 6.5964 6.9796 41 1 4.5430 6.8791 6.5703 42 1 4.3431 9.1954 7.3319 43 1 3.0746 10.2113 6.6064 44 1 2.6341 8.9129 7.7420 45 1 1.5626 4.1402 0.4059 46 1 1.7629 4.0986 2.1766 47 1 0.4549 2.1379 1.2836 48 1 1.9388 1.6563 2.1418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273790453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:27 Heat of formation + Delta-G solvation = 18.893441 kcal Electronic energy + Delta-G solvation = -30458.202537 eV Core-core repulsion = 26325.256606 eV Total energy + Delta-G solvation = -4132.945932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.33764 -40.11545 -38.46297 -38.17256 -35.04902 -34.26744 -33.06579 -32.53903 -30.86125 -30.31203 -29.62141 -28.24610 -26.17133 -25.87597 -24.24614 -23.44395 -22.99787 -22.64038 -21.17460 -19.68123 -18.22017 -18.17698 -17.75822 -17.63407 -17.01285 -16.75031 -16.35173 -15.77841 -15.42803 -15.15070 -14.42809 -14.35957 -14.13104 -14.08663 -13.70194 -13.51497 -13.35494 -13.22809 -12.96821 -12.77735 -12.49298 -12.25092 -12.05171 -11.86977 -11.70877 -11.30954 -11.12694 -10.95794 -10.75372 -10.67195 -10.63435 -10.41777 -10.33256 -10.18016 -10.11287 -9.99084 -9.93759 -9.64566 -9.39055 -8.89090 -8.40466 -7.24420 -5.76152 -3.11412 0.82844 1.35764 2.46151 2.91212 3.13463 3.36588 3.39388 3.45817 3.48503 3.76365 4.13722 4.48270 4.59182 4.60419 4.72588 4.81383 4.83538 4.87442 5.13190 5.13843 5.19223 5.22507 5.30095 5.44896 5.51535 5.56125 5.65166 5.71694 5.91252 5.95525 6.00635 6.08748 6.15502 6.24247 6.30916 6.44626 6.45964 6.49107 6.60028 6.71873 6.74005 6.89244 7.04808 7.09667 7.47077 7.77310 8.00641 8.12679 8.43311 9.21219 9.94008 10.14225 11.42117 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002958 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.580349 B = 9462.095644 C = 9747.380568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.207 3.793 4 N -0.739 5.739 5 C -0.233 4.233 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.875 3.125 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.277 1.277 13 C -0.135 4.135 14 C 0.121 3.879 15 N -0.582 5.582 16 C 0.591 3.409 17 O -0.532 6.532 18 C -0.015 4.015 19 C -0.154 4.154 20 C -0.040 4.040 21 C 0.145 3.855 22 O -0.385 6.385 23 C 0.031 3.969 24 O 0.121 5.879 25 N -0.317 5.317 26 C 0.080 3.920 27 C -0.130 4.130 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.359 0.641 34 H 0.258 0.742 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.183 0.817 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.079 0.921 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 9.288 25.735 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.116 3.884 4 N -0.382 5.382 5 C -0.362 4.362 6 H 0.110 0.890 7 C -0.189 4.189 8 N -0.581 5.581 9 Si 0.705 3.295 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.203 1.203 13 C -0.175 4.175 14 C 0.000 4.000 15 N -0.314 5.314 16 C 0.376 3.624 17 O -0.408 6.408 18 C -0.174 4.174 19 C -0.177 4.177 20 C -0.103 4.103 21 C 0.068 3.932 22 O -0.304 6.304 23 C -0.065 4.065 24 O 0.048 5.952 25 N -0.020 5.020 26 C -0.043 4.043 27 C -0.169 4.169 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.193 0.807 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.200 0.800 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.134 0.866 47 H 0.098 0.902 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.739 8.566 24.709 26.295 hybrid contribution -0.120 1.358 0.202 1.378 sum 2.619 9.924 24.911 26.943 Atomic orbital electron populations 1.21669 0.96228 0.99605 1.02309 1.21810 0.96226 0.97299 1.00572 1.19529 0.91199 0.91506 0.86183 1.42834 1.66494 1.26834 1.02041 1.18941 1.24906 1.10720 0.81677 0.89035 1.24627 1.00207 0.98746 0.95311 1.69686 1.49042 1.42038 0.97365 0.86702 0.81181 0.84534 0.77036 1.21317 1.21913 1.20259 1.22328 0.98365 0.95214 1.01584 1.21718 0.98070 0.92234 0.88018 1.48037 1.07614 1.48700 1.27059 1.16957 0.85795 0.78842 0.80854 1.90774 1.14337 1.60552 1.75155 1.23653 0.90595 1.02821 1.00315 1.22473 1.02495 0.99621 0.93079 1.23883 0.86166 1.00097 1.00166 1.20654 1.01868 0.80830 0.89855 1.87994 1.90558 1.16190 1.35621 1.22828 1.00535 0.93462 0.89657 1.84820 1.34432 1.45697 1.30238 1.73986 1.17628 1.12844 0.97549 1.22520 0.78823 0.98737 1.04181 1.22143 1.01476 0.94673 0.98567 0.91098 0.94512 0.93986 0.91310 0.93938 0.80726 0.93170 0.93097 0.89919 0.89412 0.89989 0.79998 0.90342 0.89312 0.93518 0.89012 0.93470 0.91238 0.86628 0.90220 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.47 37.16 0.35 -2.05 16 2 C -0.12 -2.09 4.73 -26.73 -0.13 -2.22 16 3 C 0.21 3.71 0.44 -131.78 -0.06 3.65 16 4 N -0.74 -15.94 3.27 -47.19 -0.15 -16.10 16 5 C -0.23 -6.03 9.05 -15.06 -0.14 -6.17 16 6 H 0.09 2.57 6.96 -52.48 -0.37 2.20 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 9 Si 0.87 21.67 27.69 -169.99 -4.71 16.97 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -6.44 6.59 56.52 0.37 -6.06 16 13 C -0.13 -2.36 4.78 -26.61 -0.13 -2.48 16 14 C 0.12 2.16 6.16 -3.71 -0.02 2.14 16 15 N -0.58 -9.87 2.97 -173.70 -0.52 -10.39 16 16 C 0.59 9.99 7.71 -12.11 -0.09 9.90 16 17 O -0.53 -10.11 16.40 5.36 0.09 -10.02 16 18 C -0.02 -0.22 6.92 -82.53 -0.57 -0.79 16 19 C -0.15 -1.73 10.93 -39.08 -0.43 -2.16 16 20 C -0.04 -0.38 7.10 -35.35 -0.25 -0.63 16 21 C 0.15 0.87 6.50 36.01 0.23 1.10 16 22 O -0.38 -3.04 10.69 -35.23 -0.38 -3.41 16 23 C 0.03 0.13 11.01 101.05 1.11 1.24 16 24 O 0.12 1.39 11.18 17.24 0.19 1.58 16 25 N -0.32 -4.27 8.57 33.29 0.29 -3.98 16 26 C 0.08 1.28 6.06 -3.71 -0.02 1.26 16 27 C -0.13 -2.03 4.68 -26.61 -0.12 -2.15 16 28 H 0.07 1.42 7.62 -51.93 -0.40 1.03 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.64 6.18 -51.93 -0.32 0.32 16 31 H 0.07 1.35 7.15 -51.93 -0.37 0.98 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.36 7.88 4.25 -40.82 -0.17 7.71 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.56 7.49 -51.93 -0.39 1.17 16 37 H 0.09 1.77 7.74 -51.93 -0.40 1.37 16 38 H 0.08 1.46 7.05 -51.92 -0.37 1.09 16 39 H 0.18 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 45 H 0.07 1.19 6.85 -51.93 -0.36 0.84 16 46 H 0.12 1.73 3.81 -70.63 -0.27 1.46 16 47 H 0.08 1.21 6.28 -51.93 -0.33 0.88 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -32.36 377.57 -6.20 -38.56 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.12 Total: 8.14 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.36 Total: 0.73 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.39 Total: -58.24 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.10 Total: -11.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.36 -6.20 -38.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273790453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.454 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds