Wall clock time and date at job start Tue Mar 31 2020 21:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 N 1.46500 * 109.45782 * 300.73707 * 3 2 1 5 5 C 1.36940 * 120.00300 * 304.77875 * 4 3 2 6 6 H 1.08004 * 119.99599 * 354.92480 * 5 4 3 7 7 C 1.38809 * 120.00190 * 174.92419 * 5 4 3 8 8 N 1.31620 * 119.99987 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47248 * 89.99845 * 9 7 5 11 11 H 1.48498 * 109.47128 * 209.99738 * 9 7 5 12 12 H 1.48500 * 109.47111 * 329.99672 * 9 7 5 13 13 C 1.53045 * 109.45976 * 180.76754 * 3 2 1 14 14 C 1.53191 * 109.31082 * 178.59730 * 13 3 2 15 15 N 1.46921 * 108.76455 * 54.65815 * 14 13 3 16 16 C 1.34772 * 120.63249 * 126.40915 * 15 14 13 17 17 O 1.21501 * 120.00301 * 6.03573 * 16 15 14 18 18 C 1.48332 * 120.00068 * 186.04257 * 16 15 14 19 19 C 1.42271 * 126.93793 * 186.81730 * 18 16 15 20 20 C 1.35313 * 103.92323 * 180.02562 * 19 18 16 21 21 C 1.50704 * 126.66966 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.46717 * 90.00107 * 21 20 19 23 23 C 1.42903 * 113.99870 * 180.02562 * 22 21 20 24 24 O 1.34017 * 106.66697 * 0.02562 * 20 19 18 25 25 N 1.20902 * 111.84553 * 359.71213 * 24 20 19 26 26 C 1.46928 * 118.73722 * 306.37631 * 15 14 13 27 27 C 1.53036 * 109.46409 * 60.71045 * 3 2 1 28 28 H 1.09000 * 109.47052 * 64.73232 * 1 2 3 29 29 H 1.09003 * 109.47531 * 184.73041 * 1 2 3 30 30 H 1.09002 * 109.47094 * 304.73131 * 1 2 3 31 31 H 1.09001 * 109.47429 * 239.99223 * 2 1 3 32 32 H 1.09001 * 109.46733 * 119.99514 * 2 1 3 33 33 H 0.97001 * 119.99996 * 124.77530 * 4 3 2 34 34 H 0.96999 * 119.99853 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.49591 * 298.56618 * 13 3 2 36 36 H 1.09003 * 109.49615 * 58.66071 * 13 3 2 37 37 H 1.09001 * 109.59724 * 294.86570 * 14 13 3 38 38 H 1.09007 * 109.58430 * 174.43860 * 14 13 3 39 39 H 1.08000 * 128.04261 * 359.97438 * 19 18 16 40 40 H 1.09003 * 109.47222 * 210.00193 * 21 20 19 41 41 H 1.09005 * 109.46903 * 330.00598 * 21 20 19 42 42 H 1.09004 * 109.47022 * 60.00156 * 23 22 21 43 43 H 1.09000 * 109.47377 * 179.97438 * 23 22 21 44 44 H 1.09005 * 109.47149 * 300.00618 * 23 22 21 45 45 H 1.08993 * 109.59217 * 293.82394 * 26 15 14 46 46 H 1.09003 * 109.58178 * 173.39794 * 26 15 14 47 47 H 1.09002 * 109.49996 * 301.33986 * 27 3 2 48 48 H 1.09001 * 109.49256 * 61.43369 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5371 2.1379 -1.1873 5 6 1.7701 1.6209 -2.4338 6 1 2.3934 0.7463 -2.5477 7 6 1.2053 2.2210 -3.5508 8 7 1.4297 1.7243 -4.7488 9 14 0.1278 3.7341 -3.3537 10 1 0.9697 4.9549 -3.4313 11 1 -0.8874 3.7634 -4.4372 12 1 -0.5556 3.6870 -2.0362 13 6 3.5703 1.4422 -0.0193 14 6 4.0768 2.8875 -0.0547 15 7 3.4880 3.6223 1.0731 16 6 4.2721 4.2936 1.9397 17 8 5.4656 4.3873 1.7321 18 6 3.6781 4.9181 3.1469 19 6 4.3343 5.7670 4.0812 20 6 3.3711 6.0634 4.9842 21 6 3.5183 6.9375 6.2030 22 8 3.2122 8.2902 5.8586 23 6 3.3224 9.2068 6.9494 24 8 2.2610 5.4276 4.5848 25 7 2.4424 4.8028 3.5658 26 6 2.0280 3.6120 1.2379 27 6 1.5445 2.1586 1.2584 28 1 -0.3633 0.4387 -0.9293 29 1 -0.3634 -1.0242 0.0847 30 1 -0.3633 0.5855 0.8446 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.0389 2.9646 -1.0905 34 1 1.0353 2.1439 -5.5294 35 1 3.9453 0.9468 0.8762 36 1 3.9229 0.9116 -0.9038 37 1 3.7784 3.3566 -0.9922 38 1 5.1635 2.8961 0.0310 39 1 5.3625 6.0973 4.0723 40 1 2.8338 6.5964 6.9796 41 1 4.5430 6.8791 6.5703 42 1 4.3431 9.1954 7.3319 43 1 3.0746 10.2113 6.6064 44 1 2.6341 8.9129 7.7420 45 1 1.5626 4.1402 0.4059 46 1 1.7629 4.0986 2.1766 47 1 0.4549 2.1379 1.2836 48 1 1.9388 1.6563 2.1418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273790453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:26 Heat of formation + Delta-G solvation = -2.558676 kcal Electronic energy + Delta-G solvation = -30459.132771 eV Core-core repulsion = 26325.256606 eV Total energy + Delta-G solvation = -4133.876165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.27968 -41.49378 -39.63016 -38.90104 -36.52361 -35.25432 -34.49379 -33.88605 -32.31755 -31.94518 -31.19994 -28.74674 -27.30561 -26.48816 -25.71463 -25.00142 -24.38848 -23.75252 -22.46864 -20.92127 -19.76267 -19.58078 -19.06346 -18.70338 -18.18552 -17.21268 -17.12740 -16.70981 -16.63629 -16.39283 -16.12701 -15.86234 -15.50227 -15.19388 -14.96320 -14.76694 -14.71016 -14.53342 -14.34606 -13.88846 -13.74115 -13.29055 -13.24054 -12.98581 -12.96482 -12.70280 -12.47725 -12.38685 -12.37632 -12.16580 -11.98713 -11.75045 -11.67334 -11.63554 -11.62197 -11.37555 -10.94284 -10.83379 -10.73329 -10.68365 -9.84386 -9.19807 -7.94539 -5.25242 -0.12219 0.45856 1.36741 1.37626 1.45038 1.56988 1.81874 1.92031 2.51590 2.67873 2.97449 3.35187 3.38029 3.53118 3.66943 3.80964 3.85230 3.99715 4.05228 4.09179 4.14381 4.32641 4.39420 4.46628 4.51392 4.57289 4.58972 4.63122 4.67590 4.71144 4.72127 4.78096 4.93911 4.96751 4.96958 5.04753 5.06955 5.19098 5.25887 5.29261 5.45992 5.59408 5.64587 5.89897 6.11762 6.15585 6.30057 6.70233 6.95765 7.16189 7.92569 8.10820 9.27342 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002958 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.580349 B = 9462.095644 C = 9747.380568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.199 3.801 4 N -0.737 5.737 5 C -0.192 4.192 6 H 0.063 0.937 7 C -0.063 4.063 8 N -0.987 5.987 9 Si 0.934 3.066 10 H -0.291 1.291 11 H -0.304 1.304 12 H -0.249 1.249 13 C -0.127 4.127 14 C 0.127 3.873 15 N -0.585 5.585 16 C 0.590 3.410 17 O -0.560 6.560 18 C -0.040 4.040 19 C -0.163 4.163 20 C -0.020 4.020 21 C 0.143 3.857 22 O -0.417 6.417 23 C 0.026 3.974 24 O 0.131 5.869 25 N -0.329 5.329 26 C 0.081 3.919 27 C -0.121 4.121 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.360 0.640 34 H 0.252 0.748 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.196 0.804 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.133 0.867 47 H 0.092 0.908 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 10.421 30.234 32.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.110 3.890 4 N -0.380 5.380 5 C -0.324 4.324 6 H 0.081 0.919 7 C -0.254 4.254 8 N -0.639 5.639 9 Si 0.764 3.236 10 H -0.218 1.218 11 H -0.231 1.231 12 H -0.174 1.174 13 C -0.168 4.168 14 C 0.005 3.995 15 N -0.317 5.317 16 C 0.377 3.623 17 O -0.438 6.438 18 C -0.197 4.197 19 C -0.185 4.185 20 C -0.084 4.084 21 C 0.066 3.934 22 O -0.337 6.337 23 C -0.069 4.069 24 O 0.055 5.945 25 N -0.030 5.030 26 C -0.042 4.042 27 C -0.159 4.159 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.194 0.806 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.213 0.787 40 H 0.122 0.878 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.150 0.850 47 H 0.110 0.890 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.990 9.692 29.276 30.902 hybrid contribution 0.200 1.008 -1.022 1.449 sum 2.190 10.700 28.253 30.291 Atomic orbital electron populations 1.21616 0.95572 1.00810 1.01354 1.21766 0.96744 0.96510 1.00575 1.19816 0.91228 0.92056 0.85926 1.42826 1.66340 1.27030 1.01769 1.18830 1.21783 1.08461 0.83285 0.91879 1.25272 1.02852 1.02147 0.95143 1.69855 1.51579 1.44232 0.98201 0.85705 0.79316 0.80845 0.77732 1.21783 1.23108 1.17388 1.22233 0.98080 0.94827 1.01615 1.21468 0.98054 0.92420 0.87523 1.48046 1.08132 1.48730 1.26753 1.17286 0.85476 0.78212 0.81374 1.90748 1.15553 1.61502 1.76019 1.23395 0.91604 1.04477 1.00224 1.22695 1.03578 0.99431 0.92811 1.24501 0.84597 0.98974 1.00314 1.20997 1.04317 0.79725 0.88336 1.87931 1.90990 1.17140 1.37615 1.23002 1.01937 0.92814 0.89163 1.84782 1.35095 1.45242 1.29362 1.73849 1.17285 1.13514 0.98358 1.22599 0.77986 0.99072 1.04497 1.22090 1.02221 0.94089 0.97493 0.94637 0.92916 0.91652 0.94369 0.90870 0.80590 0.93918 0.90875 0.92092 0.92279 0.90197 0.78657 0.87820 0.86471 0.92016 0.89000 0.92022 0.92649 0.85011 0.88966 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.47 71.98 0.68 -3.68 16 2 C -0.12 -3.90 4.73 30.59 0.14 -3.75 16 3 C 0.20 6.90 0.44 3.63 0.00 6.90 16 4 N -0.74 -31.67 3.27 -303.22 -0.99 -32.66 16 5 C -0.19 -10.25 9.05 84.03 0.76 -9.49 16 6 H 0.06 3.71 6.96 -2.91 -0.02 3.69 16 7 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 8 N -0.99 -62.98 13.97 21.65 0.30 -62.67 16 9 Si 0.93 45.68 27.69 68.60 1.90 47.58 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 11 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 12 H -0.25 -10.91 6.59 99.48 0.66 -10.25 16 13 C -0.13 -4.42 4.78 30.67 0.15 -4.27 16 14 C 0.13 4.62 6.16 86.36 0.53 5.15 16 15 N -0.59 -19.38 2.97 -821.77 -2.44 -21.82 16 16 C 0.59 19.51 7.71 86.93 0.67 20.18 16 17 O -0.56 -21.22 16.40 -3.72 -0.06 -21.28 16 18 C -0.04 -1.08 6.92 42.96 0.30 -0.78 16 19 C -0.16 -3.28 10.93 22.60 0.25 -3.03 16 20 C -0.02 -0.32 7.10 25.01 0.18 -0.15 16 21 C 0.14 1.14 6.50 71.24 0.46 1.60 16 22 O -0.42 -5.29 10.69 -148.98 -1.59 -6.89 16 23 C 0.03 0.14 11.01 113.37 1.25 1.39 16 24 O 0.13 2.60 11.18 71.88 0.80 3.41 16 25 N -0.33 -8.05 8.57 -49.52 -0.42 -8.48 16 26 C 0.08 2.43 6.06 86.36 0.52 2.95 16 27 C -0.12 -3.42 4.68 30.67 0.14 -3.27 16 28 H 0.03 1.38 7.62 -2.39 -0.02 1.36 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.77 6.18 -2.39 -0.01 1.76 16 31 H 0.04 1.50 7.15 -2.39 -0.02 1.48 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.36 15.46 4.25 -92.71 -0.39 15.07 16 34 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.37 7.49 -2.39 -0.02 2.35 16 37 H 0.06 2.47 7.74 -2.39 -0.02 2.45 16 38 H 0.08 2.91 7.05 -2.38 -0.02 2.89 16 39 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 45 H 0.06 1.82 6.85 -2.39 -0.02 1.81 16 46 H 0.13 3.62 3.81 -39.32 -0.15 3.47 16 47 H 0.09 2.43 6.28 -2.39 -0.01 2.42 16 48 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -73.22 377.57 4.40 -68.82 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.40 Total: 27.45 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 6.50 Total: 6.55 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -3.56 Total: -125.64 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.85 Total: -24.76 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.90 Total: 47.58 kcal Total: -73.22 4.40 -68.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273790453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.260 kcal (2) G-P(sol) polarization free energy of solvation -73.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds