Wall clock time and date at job start Tue Mar 31 2020 21:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47620 * 2 1 4 4 N 1.46497 * 109.46114 * 303.59508 * 3 2 1 5 5 C 1.36941 * 120.00274 * 295.44867 * 4 3 2 6 6 H 1.07999 * 119.99662 * 5.32033 * 5 4 3 7 7 C 1.38806 * 120.00276 * 185.32634 * 5 4 3 8 8 N 1.31622 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99999 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47036 * 89.99847 * 9 7 5 11 11 H 1.48505 * 109.47289 * 209.99537 * 9 7 5 12 12 H 1.48498 * 109.47456 * 330.00061 * 9 7 5 13 13 C 1.53040 * 109.46471 * 183.62230 * 3 2 1 14 14 C 1.53187 * 109.31617 * 178.63066 * 13 3 2 15 15 N 1.46927 * 108.77495 * 54.63348 * 14 13 3 16 16 C 1.34785 * 120.62960 * 126.37390 * 15 14 13 17 17 O 1.21601 * 119.99809 * 176.15763 * 16 15 14 18 18 C 1.47394 * 119.99780 * 356.42873 * 16 15 14 19 19 C 1.37363 * 128.56736 * 28.91639 * 18 16 15 20 20 O 1.33496 * 106.34026 * 179.89016 * 19 18 16 21 21 N 1.20658 * 113.15821 * 0.41373 * 20 19 18 22 22 C 1.30018 * 112.29998 * 359.73957 * 21 20 19 23 23 C 1.50699 * 127.33399 * 180.02562 * 22 21 20 24 24 O 1.42902 * 109.47150 * 269.97574 * 23 22 21 25 25 C 1.42903 * 114.00337 * 179.97438 * 24 23 22 26 26 C 1.46922 * 118.73947 * 306.64092 * 15 14 13 27 27 C 1.52765 * 109.00635 * 53.31212 * 26 15 14 28 28 H 1.08996 * 109.46800 * 52.46693 * 1 2 3 29 29 H 1.08996 * 109.47191 * 172.47672 * 1 2 3 30 30 H 1.09000 * 109.46309 * 292.47633 * 1 2 3 31 31 H 1.09000 * 109.46807 * 240.00137 * 2 1 3 32 32 H 1.09002 * 109.47388 * 120.00519 * 2 1 3 33 33 H 0.97002 * 120.00189 * 115.44581 * 4 3 2 34 34 H 0.96997 * 120.00302 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.49781 * 58.67266 * 13 3 2 36 36 H 1.09007 * 109.49728 * 298.57843 * 13 3 2 37 37 H 1.09000 * 109.58654 * 294.84557 * 14 13 3 38 38 H 1.09004 * 109.58868 * 174.42264 * 14 13 3 39 39 H 1.07998 * 126.82899 * 0.02562 * 19 18 16 40 40 H 1.08999 * 109.47396 * 29.97677 * 23 22 21 41 41 H 1.08995 * 109.47071 * 149.97540 * 23 22 21 42 42 H 1.08999 * 109.46555 * 59.99739 * 25 24 23 43 43 H 1.08993 * 109.47765 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.46980 * 300.00440 * 25 24 23 45 45 H 1.09003 * 109.58799 * 173.14327 * 26 15 14 46 46 H 1.09000 * 109.59055 * 293.57398 * 26 15 14 47 47 H 1.09001 * 109.56713 * 185.54939 * 27 26 15 48 48 H 1.09001 * 109.35656 * 65.49785 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4823 2.1574 -1.1506 5 6 1.8137 1.7725 -2.4223 6 1 2.4165 0.8903 -2.5796 7 6 1.3750 2.5162 -3.5091 8 7 0.6400 3.5912 -3.3174 9 14 1.8278 1.9916 -5.2438 10 1 0.7878 1.0713 -5.7699 11 1 1.9155 3.1900 -6.1164 12 1 3.1398 1.2964 -5.2242 13 6 3.5678 1.4431 -0.0912 14 6 4.0727 2.8889 -0.1254 15 7 3.5375 3.6045 1.0409 16 6 4.3617 4.2607 1.8816 17 8 3.9015 4.9069 2.8031 18 6 5.8206 4.1997 1.6804 19 6 6.5172 4.0337 0.5082 20 8 7.8114 4.0465 0.8353 21 7 8.0003 4.1860 2.0189 22 6 6.8898 4.2953 2.6862 23 6 6.7317 4.4811 4.1733 24 8 6.6477 3.2029 4.8068 25 6 6.4960 3.2664 6.2263 26 6 2.0875 3.5862 1.2767 27 6 1.6042 2.1370 1.2921 28 1 -0.3633 0.6261 -0.8149 29 1 -0.3633 -1.0188 -0.1345 30 1 -0.3632 0.3929 0.9496 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8781 2.9034 -1.0116 34 1 0.3332 4.1107 -4.0769 35 1 3.8782 0.9276 -1.0001 36 1 3.9843 0.9328 0.7774 37 1 3.7311 3.3737 -1.0399 38 1 5.1622 2.8964 -0.0904 39 1 6.1007 3.9182 -0.4816 40 1 7.5913 5.0249 4.5650 41 1 5.8218 5.0466 4.3741 42 1 5.5814 3.8070 6.4700 43 1 6.4404 2.2561 6.6314 44 1 7.3511 3.7850 6.6602 45 1 1.8674 4.0535 2.2365 46 1 1.5806 4.1289 0.4788 47 1 0.5170 2.1156 1.3678 48 1 2.0392 1.6202 2.1476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273795591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:38 Heat of formation + Delta-G solvation = 12.694916 kcal Electronic energy + Delta-G solvation = -31059.567016 eV Core-core repulsion = 26926.352296 eV Total energy + Delta-G solvation = -4133.214720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.06141 -40.06650 -38.22707 -37.88578 -34.95321 -34.12565 -32.82760 -32.36201 -30.65714 -30.14359 -29.12949 -28.47270 -26.05287 -25.63874 -24.23481 -23.88377 -22.72127 -21.77016 -21.16777 -20.00936 -18.40979 -17.89906 -17.45356 -17.09758 -16.97409 -16.47120 -16.09028 -15.80068 -15.21757 -15.12214 -14.58863 -14.31468 -13.93279 -13.89990 -13.76523 -13.50653 -13.13784 -12.86353 -12.73354 -12.62029 -12.35717 -12.02609 -11.77525 -11.73564 -11.45821 -11.31849 -11.15557 -10.94072 -10.79768 -10.69631 -10.42072 -10.30258 -10.27640 -10.16167 -10.03721 -9.83865 -9.69253 -9.63403 -9.40619 -8.98651 -8.30112 -7.01184 -5.84007 -3.12866 1.04979 1.52872 2.72946 3.05875 3.32036 3.36869 3.42847 3.45240 3.53492 4.04223 4.25932 4.51740 4.63460 4.81022 4.98061 5.07966 5.11826 5.16212 5.21122 5.28979 5.30248 5.45113 5.47254 5.50275 5.53214 5.63609 5.65617 5.71262 5.91071 5.93692 6.07565 6.09726 6.14938 6.16164 6.38601 6.43702 6.51400 6.60022 6.70229 6.80399 6.82998 6.90232 6.99224 7.12110 7.60950 7.65882 8.02611 8.26542 8.34425 9.46139 10.02566 10.38646 11.37996 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.003621 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.236314 B = 7730.503627 C = 8755.950929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.202 3.798 4 N -0.713 5.713 5 C -0.232 4.232 6 H 0.070 0.930 7 C -0.009 4.009 8 N -0.930 5.930 9 Si 0.899 3.101 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.282 1.282 13 C -0.133 4.133 14 C 0.092 3.908 15 N -0.586 5.586 16 C 0.592 3.408 17 O -0.544 6.544 18 C -0.228 4.228 19 C -0.018 4.018 20 O 0.103 5.897 21 N -0.341 5.341 22 C 0.060 3.940 23 C 0.140 3.860 24 O -0.385 6.385 25 C 0.034 3.966 26 C 0.120 3.880 27 C -0.131 4.131 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.242 0.758 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 -0.698 12.760 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.111 3.889 4 N -0.355 5.355 5 C -0.363 4.363 6 H 0.087 0.913 7 C -0.206 4.206 8 N -0.578 5.578 9 Si 0.731 3.269 10 H -0.219 1.219 11 H -0.220 1.220 12 H -0.208 1.208 13 C -0.173 4.173 14 C -0.029 4.029 15 N -0.317 5.317 16 C 0.379 3.621 17 O -0.423 6.423 18 C -0.235 4.235 19 C -0.098 4.098 20 O 0.039 5.961 21 N -0.046 5.046 22 C -0.103 4.103 23 C 0.063 3.937 24 O -0.303 6.303 25 C -0.063 4.063 26 C -0.002 4.002 27 C -0.170 4.170 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.486 -0.574 13.321 16.963 hybrid contribution -0.864 0.014 -1.097 1.396 sum 9.622 -0.560 12.224 15.567 Atomic orbital electron populations 1.21670 0.96133 1.00341 1.01776 1.21918 0.96370 0.98159 0.99992 1.19537 0.90738 0.91259 0.87406 1.42470 1.55039 1.37770 1.00188 1.19079 1.27175 1.06933 0.83127 0.91255 1.24685 1.00918 0.97439 0.97531 1.69646 1.40366 1.18064 1.29753 0.86322 0.77979 0.77242 0.85400 1.21926 1.21965 1.20823 1.22258 0.98662 0.94996 1.01384 1.22377 0.97685 0.94080 0.88804 1.47904 1.07544 1.50242 1.26018 1.16821 0.83487 0.79691 0.82064 1.90735 1.76697 1.42443 1.32449 1.22333 0.96002 1.12292 0.92873 1.27101 0.82818 0.98441 1.01487 1.84592 1.26205 1.66044 1.19219 1.73630 1.23495 1.17369 0.90127 1.24264 0.86823 1.01959 0.97254 1.20591 1.02581 0.86416 0.84077 1.87918 1.94637 1.27388 1.20328 1.22772 1.00102 1.03081 0.80328 1.21541 0.78426 0.97627 1.02612 1.22061 1.01464 0.95238 0.98211 0.90562 0.94691 0.94222 0.92217 0.94108 0.78155 0.93556 0.90359 0.93228 0.88197 0.90632 0.74248 0.91292 0.89183 0.93465 0.89289 0.93916 0.89830 0.90050 0.90354 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.36 37.16 0.35 -1.98 16 2 C -0.12 -2.05 4.82 -26.73 -0.13 -2.18 16 3 C 0.20 3.42 0.44 -131.78 -0.06 3.36 16 4 N -0.71 -14.78 3.03 -47.20 -0.14 -14.93 16 5 C -0.23 -5.46 8.55 -15.06 -0.13 -5.59 16 6 H 0.07 1.62 6.76 -52.49 -0.35 1.26 16 7 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 8 N -0.93 -25.50 13.06 55.49 0.72 -24.78 16 9 Si 0.90 20.66 29.55 -169.99 -5.02 15.64 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C -0.13 -2.08 4.63 -26.61 -0.12 -2.21 16 14 C 0.09 1.38 5.48 -3.71 -0.02 1.36 16 15 N -0.59 -9.25 2.98 -174.31 -0.52 -9.77 16 16 C 0.59 9.73 7.68 -12.53 -0.10 9.63 16 17 O -0.54 -10.14 15.49 5.28 0.08 -10.06 16 18 C -0.23 -3.28 6.04 -102.89 -0.62 -3.90 16 19 C -0.02 -0.21 10.14 30.41 0.31 0.10 16 20 O 0.10 1.29 11.06 18.64 0.21 1.49 16 21 N -0.34 -4.81 12.01 34.78 0.42 -4.39 16 22 C 0.06 0.86 7.21 -79.77 -0.58 0.28 16 23 C 0.14 1.80 6.46 36.01 0.23 2.03 16 24 O -0.38 -5.17 10.69 -35.23 -0.38 -5.55 16 25 C 0.03 0.31 11.01 101.05 1.11 1.42 16 26 C 0.12 1.92 6.13 -3.93 -0.02 1.90 16 27 C -0.13 -2.02 4.69 -26.83 -0.13 -2.14 16 28 H 0.08 1.48 7.27 -51.93 -0.38 1.10 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.59 6.88 -51.93 -0.36 0.23 16 31 H 0.06 1.06 7.55 -51.93 -0.39 0.67 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.38 8.78 6.63 -40.82 -0.27 8.51 16 34 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.08 1.28 7.18 -51.93 -0.37 0.91 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.73 7.59 -51.93 -0.39 1.34 16 38 H 0.08 0.93 3.23 -51.93 -0.17 0.76 16 39 H 0.24 2.10 6.03 -52.49 -0.32 1.79 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.18 7.16 -51.93 -0.37 0.81 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.04 0.32 8.14 -51.92 -0.42 -0.11 16 45 H 0.08 1.33 7.03 -51.93 -0.36 0.97 16 46 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 47 H 0.08 1.18 6.63 -51.93 -0.34 0.83 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -29.52 377.76 -5.90 -35.42 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.97 Total: 9.48 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 0.00 Total: 1.74 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.48 Total: -53.86 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.09 Total: -14.12 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.52 -5.90 -35.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273795591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.118 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds